data_2E56 # _model_server_result.job_id tf5krDXH7Sjw5OSRBRvxgw _model_server_result.datetime_utc '2024-11-22 21:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 2E56 # _exptl.entry_id 2E56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E56 _cell.length_a 53.113 _cell.length_b 53.113 _cell.length_c 111.447 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 25 1_555 A SG CYS 35 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 21 A CYS 37 1_555 A SG CYS 132 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 A SG CYS 79 A CYS 95 1_555 A SG CYS 89 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 10 A ASN 26 1_555 B C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 98 A ASN 114 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 280 n n C1 O1 NAG sing 281 n n C1 O5 NAG sing 282 n n C1 H1 NAG sing 283 n n C2 C3 NAG sing 284 n n C2 N2 NAG sing 285 n n C2 H2 NAG sing 286 n n C3 C4 NAG sing 287 n n C3 O3 NAG sing 288 n n C3 H3 NAG sing 289 n n C4 C5 NAG sing 290 n n C4 O4 NAG sing 291 n n C4 H4 NAG sing 292 n n C5 C6 NAG sing 293 n n C5 O5 NAG sing 294 n n C5 H5 NAG sing 295 n n C6 O6 NAG sing 296 n n C6 H61 NAG sing 297 n n C6 H62 NAG sing 298 n n C7 C8 NAG sing 299 n n C7 N2 NAG sing 300 n n C7 O7 NAG doub 301 n n C8 H81 NAG sing 302 n n C8 H82 NAG sing 303 n n C8 H83 NAG sing 304 n n N2 HN2 NAG sing 305 n n O1 HO1 NAG sing 306 n n O3 HO3 NAG sing 307 n n O4 HO4 NAG sing 308 n n O6 HO6 NAG sing 309 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2E56 _atom_sites.fract_transf_matrix[1][1] 0.018828 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 801 1 NAG NAG . C 2 NAG A 1 901 1 NAG NAG . D 3 MYR A 1 501 1 MYR MYR . E 3 MYR A 1 601 1 MYR MYR . F 3 MYR A 1 701 1 MYR MYR . G 4 HOH A 1 902 1 HOH HOH . G 4 HOH A 2 903 2 HOH HOH . G 4 HOH A 3 904 3 HOH HOH . G 4 HOH A 4 905 4 HOH HOH . G 4 HOH A 5 906 5 HOH HOH . G 4 HOH A 6 907 6 HOH HOH . G 4 HOH A 7 908 7 HOH HOH . G 4 HOH A 8 909 8 HOH HOH . G 4 HOH A 9 910 9 HOH HOH . G 4 HOH A 10 911 10 HOH HOH . G 4 HOH A 11 912 11 HOH HOH . G 4 HOH A 12 913 12 HOH HOH . G 4 HOH A 13 914 13 HOH HOH . G 4 HOH A 14 915 14 HOH HOH . G 4 HOH A 15 916 15 HOH HOH . G 4 HOH A 16 917 16 HOH HOH . G 4 HOH A 17 918 17 HOH HOH . G 4 HOH A 18 919 18 HOH HOH . G 4 HOH A 19 920 19 HOH HOH . G 4 HOH A 20 921 20 HOH HOH . G 4 HOH A 21 922 21 HOH HOH . G 4 HOH A 22 923 22 HOH HOH . G 4 HOH A 23 924 23 HOH HOH . G 4 HOH A 24 925 24 HOH HOH . G 4 HOH A 25 926 25 HOH HOH . G 4 HOH A 26 927 26 HOH HOH . G 4 HOH A 27 928 27 HOH HOH . G 4 HOH A 28 929 28 HOH HOH . G 4 HOH A 29 930 29 HOH HOH . G 4 HOH A 30 931 30 HOH HOH . G 4 HOH A 31 932 31 HOH HOH . G 4 HOH A 32 933 32 HOH HOH . G 4 HOH A 33 934 33 HOH HOH . G 4 HOH A 34 935 34 HOH HOH . G 4 HOH A 35 936 35 HOH HOH . G 4 HOH A 36 937 36 HOH HOH . G 4 HOH A 37 938 37 HOH HOH . G 4 HOH A 38 939 38 HOH HOH . G 4 HOH A 39 940 39 HOH HOH . G 4 HOH A 40 941 40 HOH HOH . G 4 HOH A 41 942 41 HOH HOH . G 4 HOH A 42 943 42 HOH HOH . G 4 HOH A 43 944 43 HOH HOH . G 4 HOH A 44 945 44 HOH HOH . G 4 HOH A 45 946 45 HOH HOH . G 4 HOH A 46 947 46 HOH HOH . G 4 HOH A 47 948 47 HOH HOH . G 4 HOH A 48 949 48 HOH HOH . G 4 HOH A 49 950 49 HOH HOH . G 4 HOH A 50 951 50 HOH HOH . G 4 HOH A 51 952 51 HOH HOH . G 4 HOH A 52 953 52 HOH HOH . G 4 HOH A 53 954 53 HOH HOH . G 4 HOH A 54 955 54 HOH HOH . G 4 HOH A 55 956 55 HOH HOH . G 4 HOH A 56 957 56 HOH HOH . G 4 HOH A 57 958 57 HOH HOH . G 4 HOH A 58 959 58 HOH HOH . G 4 HOH A 59 960 59 HOH HOH . G 4 HOH A 60 961 60 HOH HOH . G 4 HOH A 61 962 61 HOH HOH . G 4 HOH A 62 963 62 HOH HOH . G 4 HOH A 63 964 63 HOH HOH . G 4 HOH A 64 965 64 HOH HOH . G 4 HOH A 65 966 65 HOH HOH . G 4 HOH A 66 967 66 HOH HOH . G 4 HOH A 67 968 67 HOH HOH . G 4 HOH A 68 969 68 HOH HOH . G 4 HOH A 69 970 69 HOH HOH . G 4 HOH A 70 971 70 HOH HOH . G 4 HOH A 71 972 71 HOH HOH . G 4 HOH A 72 973 72 HOH HOH . G 4 HOH A 73 974 73 HOH HOH . G 4 HOH A 74 975 74 HOH HOH . G 4 HOH A 75 976 75 HOH HOH . G 4 HOH A 76 977 76 HOH HOH . G 4 HOH A 77 978 77 HOH HOH . G 4 HOH A 78 979 78 HOH HOH . G 4 HOH A 79 980 79 HOH HOH . G 4 HOH A 80 981 80 HOH HOH . G 4 HOH A 81 982 81 HOH HOH . G 4 HOH A 82 983 82 HOH HOH . G 4 HOH A 83 984 83 HOH HOH . G 4 HOH A 84 985 84 HOH HOH . G 4 HOH A 85 986 85 HOH HOH . G 4 HOH A 86 987 86 HOH HOH . G 4 HOH A 87 988 87 HOH HOH . G 4 HOH A 88 989 88 HOH HOH . G 4 HOH A 89 990 89 HOH HOH . G 4 HOH A 90 991 90 HOH HOH . G 4 HOH A 91 992 91 HOH HOH . G 4 HOH A 92 993 92 HOH HOH . G 4 HOH A 93 994 93 HOH HOH . G 4 HOH A 94 995 94 HOH HOH . G 4 HOH A 95 996 95 HOH HOH . G 4 HOH A 96 997 96 HOH HOH . G 4 HOH A 97 998 97 HOH HOH . G 4 HOH A 98 999 98 HOH HOH . G 4 HOH A 99 1000 99 HOH HOH . G 4 HOH A 100 1001 100 HOH HOH . G 4 HOH A 101 1002 101 HOH HOH . G 4 HOH A 102 1003 102 HOH HOH . G 4 HOH A 103 1004 103 HOH HOH . G 4 HOH A 104 1005 104 HOH HOH . G 4 HOH A 105 1006 105 HOH HOH . G 4 HOH A 106 1007 106 HOH HOH . G 4 HOH A 107 1008 107 HOH HOH . G 4 HOH A 108 1009 108 HOH HOH . G 4 HOH A 109 1010 109 HOH HOH . G 4 HOH A 110 1011 110 HOH HOH . G 4 HOH A 111 1012 111 HOH HOH . G 4 HOH A 112 1013 112 HOH HOH . G 4 HOH A 113 1014 113 HOH HOH . G 4 HOH A 114 1015 114 HOH HOH . G 4 HOH A 115 1016 115 HOH HOH . G 4 HOH A 116 1017 116 HOH HOH . G 4 HOH A 117 1018 117 HOH HOH . G 4 HOH A 118 1019 118 HOH HOH . G 4 HOH A 119 1020 119 HOH HOH . G 4 HOH A 120 1021 120 HOH HOH . G 4 HOH A 121 1022 121 HOH HOH . G 4 HOH A 122 1023 122 HOH HOH . G 4 HOH A 123 1024 123 HOH HOH . G 4 HOH A 124 1025 124 HOH HOH . G 4 HOH A 125 1026 125 HOH HOH . G 4 HOH A 126 1027 126 HOH HOH . G 4 HOH A 127 1028 127 HOH HOH . G 4 HOH A 128 1029 128 HOH HOH . G 4 HOH A 129 1030 129 HOH HOH . G 4 HOH A 130 1031 130 HOH HOH . G 4 HOH A 131 1032 131 HOH HOH . G 4 HOH A 132 1033 132 HOH HOH . G 4 HOH A 133 1034 133 HOH HOH . G 4 HOH A 134 1035 134 HOH HOH . G 4 HOH A 135 1036 135 HOH HOH . G 4 HOH A 136 1037 136 HOH HOH . G 4 HOH A 137 1038 137 HOH HOH . G 4 HOH A 138 1039 138 HOH HOH . G 4 HOH A 139 1040 139 HOH HOH . G 4 HOH A 140 1041 140 HOH HOH . G 4 HOH A 141 1042 141 HOH HOH . G 4 HOH A 142 1043 142 HOH HOH . G 4 HOH A 143 1044 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 3.482 36.43 26.34 1 90 ? C1 NAG 901 A 1 HETATM 2 C C2 NAG . . . C 2 3.833 37.909 26.566 1 90 ? C2 NAG 901 A 1 HETATM 3 C C3 NAG . . . C 2 4.866 38.131 27.663 1 90 ? C3 NAG 901 A 1 HETATM 4 C C4 NAG . . . C 2 4.476 37.334 28.895 1 90 ? C4 NAG 901 A 1 HETATM 5 C C5 NAG . . . C 2 4.437 35.877 28.467 1 90 ? C5 NAG 901 A 1 HETATM 6 C C6 NAG . . . C 2 4.188 34.929 29.63 1 90 ? C6 NAG 901 A 1 HETATM 7 C C7 NAG . . . C 2 4.028 39.799 25.092 1 90 ? C7 NAG 901 A 1 HETATM 8 C C8 NAG . . . C 2 4.982 40.596 24.241 1 90 ? C8 NAG 901 A 1 HETATM 9 N N2 NAG . . . C 2 4.346 38.535 25.363 1 90 ? N2 NAG 901 A 1 HETATM 10 O O3 NAG . . . C 2 4.973 39.509 27.958 1 90 ? O3 NAG 901 A 1 HETATM 11 O O4 NAG . . . C 2 5.445 37.532 29.89 1 90 ? O4 NAG 901 A 1 HETATM 12 O O5 NAG . . . C 2 3.374 35.719 27.557 1 90 ? O5 NAG 901 A 1 HETATM 13 O O6 NAG . . . C 2 3.532 33.774 29.151 1 90 ? O6 NAG 901 A 1 HETATM 14 O O7 NAG . . . C 2 2.994 40.346 25.506 1 90 ? O7 NAG 901 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #