data_2E59
#
_model_server_result.job_id            TUJ7nga7x0hMw4yCT1GXRQ 
_model_server_result.datetime_utc      '2024-11-23 01:59:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2e59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    2E59 
#
_exptl.entry_id    2E59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2E59 
_cell.length_a            52.795 
_cell.length_b            52.795 
_cell.length_c            110.889 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2E59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 25 1_555 A SG CYS 35 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 21 A CYS 37 1_555 A SG CYS 132 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 79 A CYS 95 1_555 A SG CYS 89 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A ND2 ASN 10 A ASN 26 1_555 B C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 A ND2 ASN 98 A ASN 114 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale3 D O6 LP5 . A LP5 501 1_555 E C1 LP4 . A LP4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 465 n n 
C1 O1 NAG sing 466 n n 
C1 O5 NAG sing 467 n n 
C1 H1 NAG sing 468 n n 
C2 C3 NAG sing 469 n n 
C2 N2 NAG sing 470 n n 
C2 H2 NAG sing 471 n n 
C3 C4 NAG sing 472 n n 
C3 O3 NAG sing 473 n n 
C3 H3 NAG sing 474 n n 
C4 C5 NAG sing 475 n n 
C4 O4 NAG sing 476 n n 
C4 H4 NAG sing 477 n n 
C5 C6 NAG sing 478 n n 
C5 O5 NAG sing 479 n n 
C5 H5 NAG sing 480 n n 
C6 O6 NAG sing 481 n n 
C6 H61 NAG sing 482 n n 
C6 H62 NAG sing 483 n n 
C7 C8 NAG sing 484 n n 
C7 N2 NAG sing 485 n n 
C7 O7 NAG doub 486 n n 
C8 H81 NAG sing 487 n n 
C8 H82 NAG sing 488 n n 
C8 H83 NAG sing 489 n n 
N2 HN2 NAG sing 490 n n 
O1 HO1 NAG sing 491 n n 
O3 HO3 NAG sing 492 n n 
O4 HO4 NAG sing 493 n n 
O6 HO6 NAG sing 494 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2E59 
_atom_sites.fract_transf_matrix[1][1]    0.018941 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018941 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 801 1 NAG NAG . 
C 2 NAG A 1 901 1 NAG NAG . 
D 3 LP5 A 1 501 1 LP5 LP2 . 
E 4 LP4 A 1 601 1 LP4 LP1 . 
F 5 HOH A 1 902 1 HOH HOH . 
F 5 HOH A 2 903 2 HOH HOH . 
F 5 HOH A 3 904 3 HOH HOH . 
F 5 HOH A 4 905 4 HOH HOH . 
F 5 HOH A 5 906 5 HOH HOH . 
F 5 HOH A 6 907 6 HOH HOH . 
F 5 HOH A 7 908 7 HOH HOH . 
F 5 HOH A 8 909 8 HOH HOH . 
F 5 HOH A 9 910 9 HOH HOH . 
F 5 HOH A 10 911 10 HOH HOH . 
F 5 HOH A 11 912 11 HOH HOH . 
F 5 HOH A 12 913 12 HOH HOH . 
F 5 HOH A 13 914 13 HOH HOH . 
F 5 HOH A 14 915 14 HOH HOH . 
F 5 HOH A 15 916 15 HOH HOH . 
F 5 HOH A 16 917 16 HOH HOH . 
F 5 HOH A 17 918 17 HOH HOH . 
F 5 HOH A 18 919 18 HOH HOH . 
F 5 HOH A 19 920 19 HOH HOH . 
F 5 HOH A 20 921 20 HOH HOH . 
F 5 HOH A 21 922 21 HOH HOH . 
F 5 HOH A 22 923 22 HOH HOH . 
F 5 HOH A 23 924 23 HOH HOH . 
F 5 HOH A 24 925 24 HOH HOH . 
F 5 HOH A 25 926 25 HOH HOH . 
F 5 HOH A 26 927 26 HOH HOH . 
F 5 HOH A 27 928 27 HOH HOH . 
F 5 HOH A 28 929 28 HOH HOH . 
F 5 HOH A 29 930 29 HOH HOH . 
F 5 HOH A 30 931 30 HOH HOH . 
F 5 HOH A 31 932 31 HOH HOH . 
F 5 HOH A 32 933 32 HOH HOH . 
F 5 HOH A 33 934 33 HOH HOH . 
F 5 HOH A 34 935 34 HOH HOH . 
F 5 HOH A 35 936 35 HOH HOH . 
F 5 HOH A 36 937 36 HOH HOH . 
F 5 HOH A 37 938 37 HOH HOH . 
F 5 HOH A 38 939 38 HOH HOH . 
F 5 HOH A 39 940 39 HOH HOH . 
F 5 HOH A 40 941 40 HOH HOH . 
F 5 HOH A 41 942 41 HOH HOH . 
F 5 HOH A 42 943 42 HOH HOH . 
F 5 HOH A 43 944 43 HOH HOH . 
F 5 HOH A 44 945 44 HOH HOH . 
F 5 HOH A 45 946 45 HOH HOH . 
F 5 HOH A 46 947 46 HOH HOH . 
F 5 HOH A 47 948 47 HOH HOH . 
F 5 HOH A 48 949 48 HOH HOH . 
F 5 HOH A 49 950 49 HOH HOH . 
F 5 HOH A 50 951 50 HOH HOH . 
F 5 HOH A 51 952 51 HOH HOH . 
F 5 HOH A 52 953 52 HOH HOH . 
F 5 HOH A 53 954 53 HOH HOH . 
F 5 HOH A 54 955 54 HOH HOH . 
F 5 HOH A 55 956 55 HOH HOH . 
F 5 HOH A 56 957 56 HOH HOH . 
F 5 HOH A 57 958 57 HOH HOH . 
F 5 HOH A 58 959 58 HOH HOH . 
F 5 HOH A 59 960 59 HOH HOH . 
F 5 HOH A 60 961 60 HOH HOH . 
F 5 HOH A 61 962 61 HOH HOH . 
F 5 HOH A 62 963 62 HOH HOH . 
F 5 HOH A 63 964 63 HOH HOH . 
F 5 HOH A 64 965 64 HOH HOH . 
F 5 HOH A 65 966 65 HOH HOH . 
F 5 HOH A 66 967 66 HOH HOH . 
F 5 HOH A 67 968 67 HOH HOH . 
F 5 HOH A 68 969 68 HOH HOH . 
F 5 HOH A 69 970 69 HOH HOH . 
F 5 HOH A 70 971 70 HOH HOH . 
F 5 HOH A 71 972 71 HOH HOH . 
F 5 HOH A 72 973 72 HOH HOH . 
F 5 HOH A 73 974 73 HOH HOH . 
F 5 HOH A 74 975 74 HOH HOH . 
F 5 HOH A 75 976 75 HOH HOH . 
F 5 HOH A 76 977 76 HOH HOH . 
F 5 HOH A 77 978 77 HOH HOH . 
F 5 HOH A 78 979 78 HOH HOH . 
F 5 HOH A 79 980 79 HOH HOH . 
F 5 HOH A 80 981 80 HOH HOH . 
F 5 HOH A 81 982 81 HOH HOH . 
F 5 HOH A 82 983 82 HOH HOH . 
F 5 HOH A 83 984 83 HOH HOH . 
F 5 HOH A 84 985 84 HOH HOH . 
F 5 HOH A 85 986 85 HOH HOH . 
F 5 HOH A 86 987 86 HOH HOH . 
F 5 HOH A 87 988 87 HOH HOH . 
F 5 HOH A 88 989 88 HOH HOH . 
F 5 HOH A 89 990 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 3.279 36.65 26.333 1 46.53 ? C1 NAG 901 A 1 
HETATM 2 C C2 NAG . . . C 2 3.859 38.029 26.633 1 44.63 ? C2 NAG 901 A 1 
HETATM 3 C C3 NAG . . . C 2 5.196 37.939 27.361 1 48.03 ? C3 NAG 901 A 1 
HETATM 4 C C4 NAG . . . C 2 5.125 36.939 28.515 1 49.16 ? C4 NAG 901 A 1 
HETATM 5 C C5 NAG . . . C 2 4.518 35.659 27.961 1 46.06 ? C5 NAG 901 A 1 
HETATM 6 C C6 NAG . . . C 2 4.52 34.512 28.944 1 44.68 ? C6 NAG 901 A 1 
HETATM 7 C C7 NAG . . . C 2 3.656 39.997 25.214 1 55.5 ? C7 NAG 901 A 1 
HETATM 8 C C8 NAG . . . C 2 2.307 40.372 25.768 1 55.53 ? C8 NAG 901 A 1 
HETATM 9 N N2 NAG . . . C 2 4.062 38.74 25.397 1 51.08 ? N2 NAG 901 A 1 
HETATM 10 O O3 NAG . . . C 2 5.545 39.223 27.825 1 46.37 ? O3 NAG 901 A 1 
HETATM 11 O O4 NAG . . . C 2 6.417 36.652 29.011 1 51.02 ? O4 NAG 901 A 1 
HETATM 12 O O5 NAG . . . C 2 3.203 35.941 27.546 1 48.23 ? O5 NAG 901 A 1 
HETATM 13 O O6 NAG . . . C 2 4.201 33.34 28.229 1 48.65 ? O6 NAG 901 A 1 
HETATM 14 O O7 NAG . . . C 2 4.334 40.826 24.601 1 55.17 ? O7 NAG 901 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#