data_2E5Y # _model_server_result.job_id p90tMlZyQ5AgTK5sxMwzbA _model_server_result.datetime_utc '2024-11-01 23:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 2E5Y # _exptl.entry_id 2E5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E5Y _cell.length_a 37.48 _cell.length_b 64.917 _cell.length_c 103.944 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2E5Y _atom_sites.fract_transf_matrix[1][1] 0.026681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1001 1 ATP ATP . D 2 ATP B 1 1002 2 ATP ATP . E 3 HOH A 1 1002 3 HOH HOH . E 3 HOH A 2 1003 4 HOH HOH . E 3 HOH A 3 1004 5 HOH HOH . E 3 HOH A 4 1005 6 HOH HOH . E 3 HOH A 5 1006 7 HOH HOH . E 3 HOH A 6 1007 8 HOH HOH . E 3 HOH A 7 1008 9 HOH HOH . E 3 HOH A 8 1009 11 HOH HOH . E 3 HOH A 9 1010 13 HOH HOH . E 3 HOH A 10 1011 19 HOH HOH . E 3 HOH A 11 1012 20 HOH HOH . E 3 HOH A 12 1013 21 HOH HOH . E 3 HOH A 13 1014 22 HOH HOH . E 3 HOH A 14 1015 23 HOH HOH . E 3 HOH A 15 1016 26 HOH HOH . E 3 HOH A 16 1017 27 HOH HOH . E 3 HOH A 17 1018 31 HOH HOH . E 3 HOH A 18 1019 34 HOH HOH . E 3 HOH A 19 1020 35 HOH HOH . E 3 HOH A 20 1021 37 HOH HOH . E 3 HOH A 21 1022 39 HOH HOH . E 3 HOH A 22 1023 40 HOH HOH . E 3 HOH A 23 1024 41 HOH HOH . E 3 HOH A 24 1025 42 HOH HOH . E 3 HOH A 25 1026 46 HOH HOH . E 3 HOH A 26 1027 47 HOH HOH . E 3 HOH A 27 1028 49 HOH HOH . E 3 HOH A 28 1029 50 HOH HOH . E 3 HOH A 29 1030 52 HOH HOH . E 3 HOH A 30 1031 53 HOH HOH . E 3 HOH A 31 1032 55 HOH HOH . E 3 HOH A 32 1033 57 HOH HOH . E 3 HOH A 33 1034 58 HOH HOH . E 3 HOH A 34 1035 60 HOH HOH . E 3 HOH A 35 1036 61 HOH HOH . E 3 HOH A 36 1037 62 HOH HOH . E 3 HOH A 37 1038 63 HOH HOH . E 3 HOH A 38 1039 65 HOH HOH . E 3 HOH A 39 1040 66 HOH HOH . E 3 HOH A 40 1041 69 HOH HOH . E 3 HOH A 41 1042 70 HOH HOH . E 3 HOH A 42 1043 71 HOH HOH . E 3 HOH A 43 1044 74 HOH HOH . E 3 HOH A 44 1045 78 HOH HOH . E 3 HOH A 45 1046 79 HOH HOH . E 3 HOH A 46 1047 81 HOH HOH . E 3 HOH A 47 1048 82 HOH HOH . E 3 HOH A 48 1049 83 HOH HOH . E 3 HOH A 49 1050 86 HOH HOH . E 3 HOH A 50 1051 87 HOH HOH . E 3 HOH A 51 1052 88 HOH HOH . E 3 HOH A 52 1053 89 HOH HOH . E 3 HOH A 53 1054 90 HOH HOH . E 3 HOH A 54 1055 92 HOH HOH . E 3 HOH A 55 1056 93 HOH HOH . E 3 HOH A 56 1057 94 HOH HOH . E 3 HOH A 57 1058 96 HOH HOH . E 3 HOH A 58 1059 97 HOH HOH . E 3 HOH A 59 1060 98 HOH HOH . E 3 HOH A 60 1061 99 HOH HOH . E 3 HOH A 61 1062 101 HOH HOH . E 3 HOH A 62 1063 102 HOH HOH . E 3 HOH A 63 1064 103 HOH HOH . E 3 HOH A 64 1065 108 HOH HOH . E 3 HOH A 65 1066 111 HOH HOH . E 3 HOH A 66 1067 112 HOH HOH . E 3 HOH A 67 1068 115 HOH HOH . E 3 HOH A 68 1069 116 HOH HOH . E 3 HOH A 69 1070 117 HOH HOH . E 3 HOH A 70 1071 121 HOH HOH . E 3 HOH A 71 1072 122 HOH HOH . E 3 HOH A 72 1073 123 HOH HOH . E 3 HOH A 73 1074 124 HOH HOH . E 3 HOH A 74 1075 127 HOH HOH . E 3 HOH A 75 1076 131 HOH HOH . E 3 HOH A 76 1077 132 HOH HOH . E 3 HOH A 77 1078 134 HOH HOH . E 3 HOH A 78 1079 135 HOH HOH . E 3 HOH A 79 1080 137 HOH HOH . E 3 HOH A 80 1081 138 HOH HOH . E 3 HOH A 81 1082 140 HOH HOH . E 3 HOH A 82 1083 142 HOH HOH . E 3 HOH A 83 1084 143 HOH HOH . E 3 HOH A 84 1085 144 HOH HOH . E 3 HOH A 85 1086 146 HOH HOH . E 3 HOH A 86 1087 147 HOH HOH . E 3 HOH A 87 1088 151 HOH HOH . E 3 HOH A 88 1089 152 HOH HOH . E 3 HOH A 89 1090 156 HOH HOH . E 3 HOH A 90 1091 160 HOH HOH . E 3 HOH A 91 1092 161 HOH HOH . E 3 HOH A 92 1093 166 HOH HOH . E 3 HOH A 93 1094 167 HOH HOH . E 3 HOH A 94 1095 172 HOH HOH . E 3 HOH A 95 1096 173 HOH HOH . E 3 HOH A 96 1097 175 HOH HOH . E 3 HOH A 97 1098 178 HOH HOH . E 3 HOH A 98 1099 180 HOH HOH . E 3 HOH A 99 1100 181 HOH HOH . E 3 HOH A 100 1101 182 HOH HOH . E 3 HOH A 101 1102 184 HOH HOH . E 3 HOH A 102 1103 185 HOH HOH . E 3 HOH A 103 1104 186 HOH HOH . E 3 HOH A 104 1105 187 HOH HOH . E 3 HOH A 105 1106 189 HOH HOH . E 3 HOH A 106 1107 195 HOH HOH . E 3 HOH A 107 1108 198 HOH HOH . E 3 HOH A 108 1109 199 HOH HOH . E 3 HOH A 109 1110 201 HOH HOH . E 3 HOH A 110 1111 204 HOH HOH . F 3 HOH B 1 1003 1 HOH HOH . F 3 HOH B 2 1004 2 HOH HOH . F 3 HOH B 3 1005 10 HOH HOH . F 3 HOH B 4 1006 12 HOH HOH . F 3 HOH B 5 1007 14 HOH HOH . F 3 HOH B 6 1008 15 HOH HOH . F 3 HOH B 7 1009 16 HOH HOH . F 3 HOH B 8 1010 17 HOH HOH . F 3 HOH B 9 1011 18 HOH HOH . F 3 HOH B 10 1012 24 HOH HOH . F 3 HOH B 11 1013 25 HOH HOH . F 3 HOH B 12 1014 28 HOH HOH . F 3 HOH B 13 1015 29 HOH HOH . F 3 HOH B 14 1016 30 HOH HOH . F 3 HOH B 15 1017 32 HOH HOH . F 3 HOH B 16 1018 33 HOH HOH . F 3 HOH B 17 1019 36 HOH HOH . F 3 HOH B 18 1020 38 HOH HOH . F 3 HOH B 19 1021 43 HOH HOH . F 3 HOH B 20 1022 44 HOH HOH . F 3 HOH B 21 1023 45 HOH HOH . F 3 HOH B 22 1024 48 HOH HOH . F 3 HOH B 23 1025 51 HOH HOH . F 3 HOH B 24 1026 54 HOH HOH . F 3 HOH B 25 1027 56 HOH HOH . F 3 HOH B 26 1028 59 HOH HOH . F 3 HOH B 27 1029 64 HOH HOH . F 3 HOH B 28 1030 67 HOH HOH . F 3 HOH B 29 1031 68 HOH HOH . F 3 HOH B 30 1032 72 HOH HOH . F 3 HOH B 31 1033 73 HOH HOH . F 3 HOH B 32 1034 75 HOH HOH . F 3 HOH B 33 1035 76 HOH HOH . F 3 HOH B 34 1036 77 HOH HOH . F 3 HOH B 35 1037 80 HOH HOH . F 3 HOH B 36 1038 84 HOH HOH . F 3 HOH B 37 1039 85 HOH HOH . F 3 HOH B 38 1040 91 HOH HOH . F 3 HOH B 39 1041 95 HOH HOH . F 3 HOH B 40 1042 100 HOH HOH . F 3 HOH B 41 1043 104 HOH HOH . F 3 HOH B 42 1044 105 HOH HOH . F 3 HOH B 43 1045 106 HOH HOH . F 3 HOH B 44 1046 107 HOH HOH . F 3 HOH B 45 1047 109 HOH HOH . F 3 HOH B 46 1048 110 HOH HOH . F 3 HOH B 47 1049 113 HOH HOH . F 3 HOH B 48 1050 114 HOH HOH . F 3 HOH B 49 1051 118 HOH HOH . F 3 HOH B 50 1052 119 HOH HOH . F 3 HOH B 51 1053 120 HOH HOH . F 3 HOH B 52 1054 125 HOH HOH . F 3 HOH B 53 1055 126 HOH HOH . F 3 HOH B 54 1056 128 HOH HOH . F 3 HOH B 55 1057 129 HOH HOH . F 3 HOH B 56 1058 130 HOH HOH . F 3 HOH B 57 1059 133 HOH HOH . F 3 HOH B 58 1060 136 HOH HOH . F 3 HOH B 59 1061 139 HOH HOH . F 3 HOH B 60 1062 141 HOH HOH . F 3 HOH B 61 1063 145 HOH HOH . F 3 HOH B 62 1064 148 HOH HOH . F 3 HOH B 63 1065 149 HOH HOH . F 3 HOH B 64 1066 150 HOH HOH . F 3 HOH B 65 1067 153 HOH HOH . F 3 HOH B 66 1068 154 HOH HOH . F 3 HOH B 67 1069 155 HOH HOH . F 3 HOH B 68 1070 157 HOH HOH . F 3 HOH B 69 1071 158 HOH HOH . F 3 HOH B 70 1072 159 HOH HOH . F 3 HOH B 71 1073 162 HOH HOH . F 3 HOH B 72 1074 163 HOH HOH . F 3 HOH B 73 1075 164 HOH HOH . F 3 HOH B 74 1076 165 HOH HOH . F 3 HOH B 75 1077 168 HOH HOH . F 3 HOH B 76 1078 169 HOH HOH . F 3 HOH B 77 1079 170 HOH HOH . F 3 HOH B 78 1080 171 HOH HOH . F 3 HOH B 79 1081 174 HOH HOH . F 3 HOH B 80 1082 176 HOH HOH . F 3 HOH B 81 1083 177 HOH HOH . F 3 HOH B 82 1084 179 HOH HOH . F 3 HOH B 83 1085 183 HOH HOH . F 3 HOH B 84 1086 188 HOH HOH . F 3 HOH B 85 1087 190 HOH HOH . F 3 HOH B 86 1088 191 HOH HOH . F 3 HOH B 87 1089 192 HOH HOH . F 3 HOH B 88 1090 193 HOH HOH . F 3 HOH B 89 1091 194 HOH HOH . F 3 HOH B 90 1092 196 HOH HOH . F 3 HOH B 91 1093 197 HOH HOH . F 3 HOH B 92 1094 200 HOH HOH . F 3 HOH B 93 1095 202 HOH HOH . F 3 HOH B 94 1096 203 HOH HOH . F 3 HOH B 95 1097 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 38.958 25.635 -1.744 1 22.53 ? PG ATP 1002 B 1 HETATM 2 O O1G ATP . . . D 2 40.144 25.513 -0.826 1 24.22 ? O1G ATP 1002 B 1 HETATM 3 O O2G ATP . . . D 2 39.255 26.598 -2.846 1 24.39 ? O2G ATP 1002 B 1 HETATM 4 O O3G ATP . . . D 2 38.468 24.306 -2.243 1 23.02 ? O3G ATP 1002 B 1 HETATM 5 P PB ATP . . . D 2 36.881 25.937 0.355 1 19.96 ? PB ATP 1002 B 1 HETATM 6 O O1B ATP . . . D 2 35.517 26.462 0.096 1 22.24 ? O1B ATP 1002 B 1 HETATM 7 O O2B ATP . . . D 2 37.064 24.492 0.704 1 19.95 ? O2B ATP 1002 B 1 HETATM 8 O O3B ATP . . . D 2 37.684 26.337 -1.005 1 20.09 ? O3B ATP 1002 B 1 HETATM 9 P PA ATP . . . D 2 37.347 27.141 2.94 1 19.78 ? PA ATP 1002 B 1 HETATM 10 O O1A ATP . . . D 2 36.077 27.929 2.992 1 17.94 ? O1A ATP 1002 B 1 HETATM 11 O O2A ATP . . . D 2 37.468 25.849 3.709 1 21.17 ? O2A ATP 1002 B 1 HETATM 12 O O3A ATP . . . D 2 37.764 26.852 1.385 1 20.77 ? O3A ATP 1002 B 1 HETATM 13 O O5' ATP . . . D 2 38.575 28.087 3.329 1 20.17 ? O5' ATP 1002 B 1 HETATM 14 C C5' ATP . . . D 2 39.864 27.541 3.709 1 22.5 ? C5' ATP 1002 B 1 HETATM 15 C C4' ATP . . . D 2 40.918 28.653 3.86 1 22.54 ? C4' ATP 1002 B 1 HETATM 16 O O4' ATP . . . D 2 41.267 29.098 2.554 1 21 ? O4' ATP 1002 B 1 HETATM 17 C C3' ATP . . . D 2 40.242 29.817 4.523 1 24.3 ? C3' ATP 1002 B 1 HETATM 18 O O3' ATP . . . D 2 41.415 30.46 5.065 1 21.14 ? O3' ATP 1002 B 1 HETATM 19 C C2' ATP . . . D 2 39.912 30.857 3.476 1 19.75 ? C2' ATP 1002 B 1 HETATM 20 O O2' ATP . . . D 2 39.85 32.226 3.883 1 17.73 ? O2' ATP 1002 B 1 HETATM 21 C C1' ATP . . . D 2 40.8 30.421 2.308 1 21.02 ? C1' ATP 1002 B 1 HETATM 22 N N9 ATP . . . D 2 40.216 30.546 0.984 1 20.18 ? N9 ATP 1002 B 1 HETATM 23 C C8 ATP . . . D 2 39.237 29.613 0.444 1 19.25 ? C8 ATP 1002 B 1 HETATM 24 N N7 ATP . . . D 2 38.918 30.114 -0.887 1 18.8 ? N7 ATP 1002 B 1 HETATM 25 C C5 ATP . . . D 2 39.587 31.368 -1.058 1 19.51 ? C5 ATP 1002 B 1 HETATM 26 C C6 ATP . . . D 2 39.65 32.294 -2.254 1 18.19 ? C6 ATP 1002 B 1 HETATM 27 N N6 ATP . . . D 2 39.376 31.709 -3.535 1 19.09 ? N6 ATP 1002 B 1 HETATM 28 N N1 ATP . . . D 2 40.588 33.377 -2.101 1 21.01 ? N1 ATP 1002 B 1 HETATM 29 C C2 ATP . . . D 2 41.423 33.685 -0.929 1 21.07 ? C2 ATP 1002 B 1 HETATM 30 N N3 ATP . . . D 2 41.344 32.744 0.177 1 19.09 ? N3 ATP 1002 B 1 HETATM 31 C C4 ATP . . . D 2 40.418 31.659 0.12 1 19.46 ? C4 ATP 1002 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #