data_2E69 # _model_server_result.job_id HAD1bMfhyThOdzV-FqxSjA _model_server_result.datetime_utc '2024-11-26 01:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 2E69 # _exptl.entry_id 2E69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E69 _cell.length_a 131.825 _cell.length_b 131.825 _cell.length_c 131.209 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -43.736333 3 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 O N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2E69 _atom_sites.fract_transf_matrix[1][1] 0.007586 _atom_sites.fract_transf_matrix[1][2] 0.00438 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 301 301 SO4 SO4 . F 2 SO4 A 1 302 302 SO4 SO4 . G 2 SO4 A 1 303 303 SO4 SO4 . H 2 SO4 A 1 304 304 SO4 SO4 . I 2 SO4 A 1 305 305 SO4 SO4 . J 3 GOL A 1 401 401 GOL GOL . K 2 SO4 B 1 306 306 SO4 SO4 . L 2 SO4 B 1 307 307 SO4 SO4 . M 2 SO4 B 1 308 308 SO4 SO4 . N 2 SO4 B 1 309 309 SO4 SO4 . O 3 GOL B 1 402 402 GOL GOL . P 2 SO4 C 1 310 310 SO4 SO4 . Q 2 SO4 C 1 311 311 SO4 SO4 . R 2 SO4 D 1 312 312 SO4 SO4 . S 2 SO4 D 1 313 313 SO4 SO4 . T 2 SO4 D 1 314 314 SO4 SO4 . U 4 HOH A 1 402 3 HOH HOH . U 4 HOH A 2 403 4 HOH HOH . U 4 HOH A 3 404 5 HOH HOH . U 4 HOH A 4 405 7 HOH HOH . U 4 HOH A 5 406 12 HOH HOH . U 4 HOH A 6 407 18 HOH HOH . U 4 HOH A 7 408 19 HOH HOH . U 4 HOH A 8 409 25 HOH HOH . U 4 HOH A 9 410 29 HOH HOH . U 4 HOH A 10 411 31 HOH HOH . U 4 HOH A 11 412 32 HOH HOH . U 4 HOH A 12 413 35 HOH HOH . U 4 HOH A 13 414 36 HOH HOH . U 4 HOH A 14 415 37 HOH HOH . U 4 HOH A 15 416 43 HOH HOH . U 4 HOH A 16 417 46 HOH HOH . U 4 HOH A 17 418 49 HOH HOH . U 4 HOH A 18 419 52 HOH HOH . U 4 HOH A 19 420 53 HOH HOH . U 4 HOH A 20 421 54 HOH HOH . U 4 HOH A 21 422 55 HOH HOH . U 4 HOH A 22 423 58 HOH HOH . U 4 HOH A 23 424 60 HOH HOH . U 4 HOH A 24 425 67 HOH HOH . U 4 HOH A 25 426 74 HOH HOH . U 4 HOH A 26 427 75 HOH HOH . U 4 HOH A 27 428 78 HOH HOH . U 4 HOH A 28 429 82 HOH HOH . U 4 HOH A 29 430 84 HOH HOH . U 4 HOH A 30 431 85 HOH HOH . U 4 HOH A 31 432 86 HOH HOH . U 4 HOH A 32 433 88 HOH HOH . U 4 HOH A 33 434 90 HOH HOH . U 4 HOH A 34 435 104 HOH HOH . U 4 HOH A 35 436 112 HOH HOH . U 4 HOH A 36 437 114 HOH HOH . U 4 HOH A 37 438 115 HOH HOH . U 4 HOH A 38 439 119 HOH HOH . U 4 HOH A 39 440 123 HOH HOH . U 4 HOH A 40 441 124 HOH HOH . U 4 HOH A 41 442 125 HOH HOH . U 4 HOH A 42 443 134 HOH HOH . U 4 HOH A 43 444 138 HOH HOH . U 4 HOH A 44 445 139 HOH HOH . U 4 HOH A 45 446 140 HOH HOH . U 4 HOH A 46 447 146 HOH HOH . U 4 HOH A 47 448 157 HOH HOH . U 4 HOH A 48 449 158 HOH HOH . U 4 HOH A 49 450 159 HOH HOH . U 4 HOH A 50 451 161 HOH HOH . U 4 HOH A 51 452 166 HOH HOH . U 4 HOH A 52 453 167 HOH HOH . U 4 HOH A 53 454 168 HOH HOH . U 4 HOH A 54 455 169 HOH HOH . U 4 HOH A 55 456 170 HOH HOH . U 4 HOH A 56 457 173 HOH HOH . U 4 HOH A 57 458 175 HOH HOH . U 4 HOH A 58 459 176 HOH HOH . U 4 HOH A 59 460 180 HOH HOH . U 4 HOH A 60 461 183 HOH HOH . U 4 HOH A 61 462 189 HOH HOH . U 4 HOH A 62 463 190 HOH HOH . U 4 HOH A 63 464 197 HOH HOH . U 4 HOH A 64 465 198 HOH HOH . U 4 HOH A 65 466 199 HOH HOH . U 4 HOH A 66 467 202 HOH HOH . U 4 HOH A 67 468 209 HOH HOH . U 4 HOH A 68 469 212 HOH HOH . U 4 HOH A 69 470 214 HOH HOH . V 4 HOH B 1 403 2 HOH HOH . V 4 HOH B 2 404 9 HOH HOH . V 4 HOH B 3 405 10 HOH HOH . V 4 HOH B 4 406 11 HOH HOH . V 4 HOH B 5 407 15 HOH HOH . V 4 HOH B 6 408 17 HOH HOH . V 4 HOH B 7 409 21 HOH HOH . V 4 HOH B 8 410 24 HOH HOH . V 4 HOH B 9 411 26 HOH HOH . V 4 HOH B 10 412 27 HOH HOH . V 4 HOH B 11 413 28 HOH HOH . V 4 HOH B 12 414 40 HOH HOH . V 4 HOH B 13 415 44 HOH HOH . V 4 HOH B 14 416 47 HOH HOH . V 4 HOH B 15 417 48 HOH HOH . V 4 HOH B 16 418 57 HOH HOH . V 4 HOH B 17 419 64 HOH HOH . V 4 HOH B 18 420 70 HOH HOH . V 4 HOH B 19 421 80 HOH HOH . V 4 HOH B 20 422 83 HOH HOH . V 4 HOH B 21 423 89 HOH HOH . V 4 HOH B 22 424 92 HOH HOH . V 4 HOH B 23 425 93 HOH HOH . V 4 HOH B 24 426 94 HOH HOH . V 4 HOH B 25 427 98 HOH HOH . V 4 HOH B 26 428 99 HOH HOH . V 4 HOH B 27 429 100 HOH HOH . V 4 HOH B 28 430 101 HOH HOH . V 4 HOH B 29 431 103 HOH HOH . V 4 HOH B 30 432 107 HOH HOH . V 4 HOH B 31 433 108 HOH HOH . V 4 HOH B 32 434 116 HOH HOH . V 4 HOH B 33 435 121 HOH HOH . V 4 HOH B 34 436 128 HOH HOH . V 4 HOH B 35 437 132 HOH HOH . V 4 HOH B 36 438 135 HOH HOH . V 4 HOH B 37 439 145 HOH HOH . V 4 HOH B 38 440 147 HOH HOH . V 4 HOH B 39 441 149 HOH HOH . V 4 HOH B 40 442 154 HOH HOH . V 4 HOH B 41 443 155 HOH HOH . V 4 HOH B 42 444 156 HOH HOH . V 4 HOH B 43 445 172 HOH HOH . V 4 HOH B 44 446 174 HOH HOH . V 4 HOH B 45 447 177 HOH HOH . V 4 HOH B 46 448 179 HOH HOH . V 4 HOH B 47 449 185 HOH HOH . V 4 HOH B 48 450 193 HOH HOH . V 4 HOH B 49 451 200 HOH HOH . V 4 HOH B 50 452 201 HOH HOH . V 4 HOH B 51 453 203 HOH HOH . V 4 HOH B 52 454 204 HOH HOH . V 4 HOH B 53 455 208 HOH HOH . V 4 HOH B 54 456 213 HOH HOH . V 4 HOH B 55 457 215 HOH HOH . V 4 HOH B 56 458 216 HOH HOH . V 4 HOH B 57 459 217 HOH HOH . W 4 HOH C 1 312 6 HOH HOH . W 4 HOH C 2 313 13 HOH HOH . W 4 HOH C 3 314 14 HOH HOH . W 4 HOH C 4 315 20 HOH HOH . W 4 HOH C 5 316 23 HOH HOH . W 4 HOH C 6 317 30 HOH HOH . W 4 HOH C 7 318 33 HOH HOH . W 4 HOH C 8 319 38 HOH HOH . W 4 HOH C 9 320 51 HOH HOH . W 4 HOH C 10 321 62 HOH HOH . W 4 HOH C 11 322 68 HOH HOH . W 4 HOH C 12 323 71 HOH HOH . W 4 HOH C 13 324 77 HOH HOH . W 4 HOH C 14 325 79 HOH HOH . W 4 HOH C 15 326 81 HOH HOH . W 4 HOH C 16 327 95 HOH HOH . W 4 HOH C 17 328 96 HOH HOH . W 4 HOH C 18 329 97 HOH HOH . W 4 HOH C 19 330 106 HOH HOH . W 4 HOH C 20 331 113 HOH HOH . W 4 HOH C 21 332 117 HOH HOH . W 4 HOH C 22 333 120 HOH HOH . W 4 HOH C 23 334 126 HOH HOH . W 4 HOH C 24 335 129 HOH HOH . W 4 HOH C 25 336 133 HOH HOH . W 4 HOH C 26 337 136 HOH HOH . W 4 HOH C 27 338 137 HOH HOH . W 4 HOH C 28 339 141 HOH HOH . W 4 HOH C 29 340 142 HOH HOH . W 4 HOH C 30 341 143 HOH HOH . W 4 HOH C 31 342 144 HOH HOH . W 4 HOH C 32 343 151 HOH HOH . W 4 HOH C 33 344 162 HOH HOH . W 4 HOH C 34 345 171 HOH HOH . W 4 HOH C 35 346 178 HOH HOH . W 4 HOH C 36 347 181 HOH HOH . W 4 HOH C 37 348 182 HOH HOH . W 4 HOH C 38 349 184 HOH HOH . W 4 HOH C 39 350 186 HOH HOH . W 4 HOH C 40 351 187 HOH HOH . W 4 HOH C 41 352 188 HOH HOH . W 4 HOH C 42 353 191 HOH HOH . W 4 HOH C 43 354 192 HOH HOH . W 4 HOH C 44 355 206 HOH HOH . W 4 HOH C 45 356 210 HOH HOH . W 4 HOH C 46 357 211 HOH HOH . X 4 HOH D 1 315 1 HOH HOH . X 4 HOH D 2 316 8 HOH HOH . X 4 HOH D 3 317 16 HOH HOH . X 4 HOH D 4 318 22 HOH HOH . X 4 HOH D 5 319 34 HOH HOH . X 4 HOH D 6 320 39 HOH HOH . X 4 HOH D 7 321 41 HOH HOH . X 4 HOH D 8 322 42 HOH HOH . X 4 HOH D 9 323 45 HOH HOH . X 4 HOH D 10 324 50 HOH HOH . X 4 HOH D 11 325 56 HOH HOH . X 4 HOH D 12 326 59 HOH HOH . X 4 HOH D 13 327 61 HOH HOH . X 4 HOH D 14 328 63 HOH HOH . X 4 HOH D 15 329 65 HOH HOH . X 4 HOH D 16 330 66 HOH HOH . X 4 HOH D 17 331 69 HOH HOH . X 4 HOH D 18 332 72 HOH HOH . X 4 HOH D 19 333 73 HOH HOH . X 4 HOH D 20 334 76 HOH HOH . X 4 HOH D 21 335 87 HOH HOH . X 4 HOH D 22 336 91 HOH HOH . X 4 HOH D 23 337 102 HOH HOH . X 4 HOH D 24 338 105 HOH HOH . X 4 HOH D 25 339 109 HOH HOH . X 4 HOH D 26 340 110 HOH HOH . X 4 HOH D 27 341 111 HOH HOH . X 4 HOH D 28 342 118 HOH HOH . X 4 HOH D 29 343 122 HOH HOH . X 4 HOH D 30 344 127 HOH HOH . X 4 HOH D 31 345 130 HOH HOH . X 4 HOH D 32 346 131 HOH HOH . X 4 HOH D 33 347 148 HOH HOH . X 4 HOH D 34 348 150 HOH HOH . X 4 HOH D 35 349 152 HOH HOH . X 4 HOH D 36 350 153 HOH HOH . X 4 HOH D 37 351 160 HOH HOH . X 4 HOH D 38 352 163 HOH HOH . X 4 HOH D 39 353 164 HOH HOH . X 4 HOH D 40 354 165 HOH HOH . X 4 HOH D 41 355 194 HOH HOH . X 4 HOH D 42 356 195 HOH HOH . X 4 HOH D 43 357 196 HOH HOH . X 4 HOH D 44 358 205 HOH HOH . X 4 HOH D 45 359 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 3 18.723 33.515 -8.769 1 50.82 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . O 3 19.023 32.135 -8.65 1 55.02 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . O 3 19.822 34.243 -9.547 1 55.32 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . O 3 19.976 33.65 -10.873 1 42.07 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . O 3 19.428 35.732 -9.634 1 54.33 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . O 3 20.41 36.483 -10.344 1 56.53 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #