data_2E6B # _model_server_result.job_id YjLG3ZttGUPyK_mPtspHMw _model_server_result.datetime_utc '2024-10-13 00:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":502}' # _entry.id 2E6B # _exptl.entry_id 2E6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E6B _cell.length_a 132.018 _cell.length_b 132.018 _cell.length_c 130.824 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -43.608 3 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A OD1 ASP 8 A ASP 8 1_555 F W WO4 . A WO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 A OD1 ASP 9 A ASP 9 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 A OD1 ASN 96 A ASN 96 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc5 E MG MG . A MG 301 1_555 F O3 WO4 . A WO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 B OD2 ASP 8 B ASP 8 1_555 L MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc7 B OD1 ASP 8 B ASP 8 1_555 M W WO4 . B WO4 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc8 B OD1 ASP 9 B ASP 9 1_555 L MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc9 B OD1 ASN 96 B ASN 96 1_555 L MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc10 L MG MG . B MG 1301 1_555 M O3 WO4 . B WO4 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc11 C OD2 ASP 8 C ASP 8 1_555 R MG MG . C MG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 C OD1 ASP 8 C ASP 8 1_555 S W WO4 . C WO4 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc13 C OD1 ASP 9 C ASP 9 1_555 R MG MG . C MG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc14 C OD1 ASN 96 C ASN 96 1_555 R MG MG . C MG 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc15 R MG MG . C MG 2301 1_555 S O3 WO4 . C WO4 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? metalc ? metalc16 D OD2 ASP 8 D ASP 8 1_555 U MG MG . D MG 3301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc17 D OD1 ASP 8 D ASP 8 1_555 V W WO4 . D WO4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc18 D OD1 ASP 9 D ASP 9 1_555 U MG MG . D MG 3301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc19 D OD1 ASN 96 D ASN 96 1_555 U MG MG . D MG 3301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc20 U MG MG . D MG 3301 1_555 V O3 WO4 . D WO4 3302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2E6B _atom_sites.fract_transf_matrix[1][1] 0.007575 _atom_sites.fract_transf_matrix[1][2] 0.004373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 301 MG MG . F 3 WO4 A 1 302 302 WO4 WO4 . G 4 SO4 A 1 401 401 SO4 SO4 . H 4 SO4 A 1 402 402 SO4 SO4 . I 4 SO4 A 1 403 403 SO4 SO4 . J 4 SO4 A 1 404 404 SO4 SO4 . K 5 GOL A 1 501 501 GOL GOL . L 2 MG B 1 1301 1301 MG MG . M 3 WO4 B 1 1302 1302 WO4 WO4 . N 4 SO4 B 1 1401 1401 SO4 SO4 . O 4 SO4 B 1 1402 1402 SO4 SO4 . P 4 SO4 B 1 1403 1403 SO4 SO4 . Q 5 GOL B 1 502 502 GOL GOL . R 2 MG C 1 2301 2301 MG MG . S 3 WO4 C 1 2302 2302 WO4 WO4 . T 4 SO4 C 1 2401 2401 SO4 SO4 . U 2 MG D 1 3301 3301 MG MG . V 3 WO4 D 1 3302 3302 WO4 WO4 . W 4 SO4 D 1 3401 3401 SO4 SO4 . X 4 SO4 D 1 3402 3402 SO4 SO4 . Y 6 HOH A 1 502 3 HOH HOH . Y 6 HOH A 2 503 4 HOH HOH . Y 6 HOH A 3 504 6 HOH HOH . Y 6 HOH A 4 505 7 HOH HOH . Y 6 HOH A 5 506 8 HOH HOH . Y 6 HOH A 6 507 9 HOH HOH . Y 6 HOH A 7 508 10 HOH HOH . Y 6 HOH A 8 509 12 HOH HOH . Y 6 HOH A 9 510 13 HOH HOH . Y 6 HOH A 10 511 26 HOH HOH . Y 6 HOH A 11 512 28 HOH HOH . Y 6 HOH A 12 513 35 HOH HOH . Y 6 HOH A 13 514 39 HOH HOH . Y 6 HOH A 14 515 40 HOH HOH . Y 6 HOH A 15 516 42 HOH HOH . Y 6 HOH A 16 517 45 HOH HOH . Y 6 HOH A 17 518 48 HOH HOH . Y 6 HOH A 18 519 49 HOH HOH . Y 6 HOH A 19 520 51 HOH HOH . Y 6 HOH A 20 521 52 HOH HOH . Y 6 HOH A 21 522 68 HOH HOH . Y 6 HOH A 22 523 71 HOH HOH . Y 6 HOH A 23 524 73 HOH HOH . Y 6 HOH A 24 525 77 HOH HOH . Y 6 HOH A 25 526 80 HOH HOH . Y 6 HOH A 26 527 82 HOH HOH . Y 6 HOH A 27 528 83 HOH HOH . Z 6 HOH B 1 1404 2 HOH HOH . Z 6 HOH B 2 1405 5 HOH HOH . Z 6 HOH B 3 1406 11 HOH HOH . Z 6 HOH B 4 1407 16 HOH HOH . Z 6 HOH B 5 1408 21 HOH HOH . Z 6 HOH B 6 1409 22 HOH HOH . Z 6 HOH B 7 1410 24 HOH HOH . Z 6 HOH B 8 1411 25 HOH HOH . Z 6 HOH B 9 1412 27 HOH HOH . Z 6 HOH B 10 1413 32 HOH HOH . Z 6 HOH B 11 1414 33 HOH HOH . Z 6 HOH B 12 1415 34 HOH HOH . Z 6 HOH B 13 1416 38 HOH HOH . Z 6 HOH B 14 1417 41 HOH HOH . Z 6 HOH B 15 1418 54 HOH HOH . Z 6 HOH B 16 1419 56 HOH HOH . Z 6 HOH B 17 1420 58 HOH HOH . Z 6 HOH B 18 1421 59 HOH HOH . Z 6 HOH B 19 1422 61 HOH HOH . Z 6 HOH B 20 1423 66 HOH HOH . Z 6 HOH B 21 1424 67 HOH HOH . Z 6 HOH B 22 1425 69 HOH HOH . Z 6 HOH B 23 1426 70 HOH HOH . Z 6 HOH B 24 1427 72 HOH HOH . Z 6 HOH B 25 1428 74 HOH HOH . Z 6 HOH B 26 1429 81 HOH HOH . Z 6 HOH B 27 1430 84 HOH HOH . AA 6 HOH C 1 2402 14 HOH HOH . AA 6 HOH C 2 2403 15 HOH HOH . AA 6 HOH C 3 2404 20 HOH HOH . AA 6 HOH C 4 2405 23 HOH HOH . AA 6 HOH C 5 2406 30 HOH HOH . AA 6 HOH C 6 2407 37 HOH HOH . AA 6 HOH C 7 2408 43 HOH HOH . AA 6 HOH C 8 2409 44 HOH HOH . AA 6 HOH C 9 2410 47 HOH HOH . AA 6 HOH C 10 2411 53 HOH HOH . AA 6 HOH C 11 2412 57 HOH HOH . AA 6 HOH C 12 2413 60 HOH HOH . AA 6 HOH C 13 2414 63 HOH HOH . AA 6 HOH C 14 2415 64 HOH HOH . AA 6 HOH C 15 2416 76 HOH HOH . AA 6 HOH C 16 2417 85 HOH HOH . BA 6 HOH D 1 3403 1 HOH HOH . BA 6 HOH D 2 3404 17 HOH HOH . BA 6 HOH D 3 3405 18 HOH HOH . BA 6 HOH D 4 3406 19 HOH HOH . BA 6 HOH D 5 3407 29 HOH HOH . BA 6 HOH D 6 3408 31 HOH HOH . BA 6 HOH D 7 3409 36 HOH HOH . BA 6 HOH D 8 3410 46 HOH HOH . BA 6 HOH D 9 3411 50 HOH HOH . BA 6 HOH D 10 3412 55 HOH HOH . BA 6 HOH D 11 3413 62 HOH HOH . BA 6 HOH D 12 3414 65 HOH HOH . BA 6 HOH D 13 3415 75 HOH HOH . BA 6 HOH D 14 3416 78 HOH HOH . BA 6 HOH D 15 3417 79 HOH HOH . BA 6 HOH D 16 3418 86 HOH HOH . BA 6 HOH D 17 3419 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 5 18.497 33.489 -8.742 1 57.4 ? C1 GOL 502 B 1 HETATM 2 O O1 GOL . . . Q 5 18.81 32.107 -8.59 1 60.87 ? O1 GOL 502 B 1 HETATM 3 C C2 GOL . . . Q 5 19.658 34.234 -9.408 1 58.92 ? C2 GOL 502 B 1 HETATM 4 O O2 GOL . . . Q 5 19.928 33.662 -10.705 1 53.53 ? O2 GOL 502 B 1 HETATM 5 C C3 GOL . . . Q 5 19.287 35.717 -9.549 1 56.83 ? C3 GOL 502 B 1 HETATM 6 O O3 GOL . . . Q 5 20.357 36.437 -10.165 1 55.81 ? O3 GOL 502 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #