data_2E74 # _model_server_result.job_id BE1KFN5kpoX2nygpwBU8aw _model_server_result.datetime_utc '2024-11-22 10:04:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1104}' # _entry.id 2E74 # _exptl.entry_id 2E74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.589 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYL-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E74 _cell.length_a 158.343 _cell.length_b 158.343 _cell.length_c 361.094 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.1715 137.129061 60.182333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 N N N ? 11 O N N ? 11 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 L CAB HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? covale ? covale2 C SG CYS 25 C CYS 25 1_555 T CAC HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 J FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 K FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 J FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 K FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 T FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 T FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc7 D SG CYS 108 D CYS 108 1_555 U FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc8 D ND1 HIS 110 D HIS 110 1_555 U FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 D SG CYS 126 D CYS 126 1_555 U FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 D ND1 HIS 129 D HIS 129 1_555 U FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C23 H44 O11' _chem_comp.formula_weight 496.589 _chem_comp.id UMQ _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYL-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 UMQ sing 959 n n C2 C1 UMQ sing 960 n n C2 C3 UMQ sing 961 n n C2 H21 UMQ sing 962 n n C4 C5 UMQ sing 963 n n C4 O4 UMQ sing 964 n n C4 C3 UMQ sing 965 n n C4 H41 UMQ sing 966 n n C5 C6 UMQ sing 967 n n C5 O5 UMQ sing 968 n n C5 H51 UMQ sing 969 n n C6 O6 UMQ sing 970 n n C6 H61 UMQ sing 971 n n C6 H62 UMQ sing 972 n n O2 HO21 UMQ sing 973 n n O4 HO41 UMQ sing 974 n n C1 O1 UMQ sing 975 n n C1 O5 UMQ sing 976 n n C1 H11 UMQ sing 977 n n C3 O3 UMQ sing 978 n n C3 H31 UMQ sing 979 n n O1 C4' UMQ sing 980 n n O3 HO31 UMQ sing 981 n n O6 HO61 UMQ sing 982 n n C1' C2' UMQ sing 983 n n C1' O1' UMQ sing 984 n n C1' O5' UMQ sing 985 n n C1' "H1'1" UMQ sing 986 n n C2' C3' UMQ sing 987 n n C2' O2' UMQ sing 988 n n C2' "H2'1" UMQ sing 989 n n C3' C4' UMQ sing 990 n n C3' O3' UMQ sing 991 n n C3' "H3'1" UMQ sing 992 n n C4' C5' UMQ sing 993 n n C4' "H4'1" UMQ sing 994 n n C5' C6' UMQ sing 995 n n C5' O5' UMQ sing 996 n n C5' "H5'1" UMQ sing 997 n n C6' O6' UMQ sing 998 n n C6' "H6'1" UMQ sing 999 n n C6' "H6'2" UMQ sing 1000 n n O1' CA UMQ sing 1001 n n O3' HO3' UMQ sing 1002 n n O6' HO6' UMQ sing 1003 n n O2' HO2' UMQ sing 1004 n n CA CB UMQ sing 1005 n n CA HA1 UMQ sing 1006 n n CA HA2 UMQ sing 1007 n n CB CC UMQ sing 1008 n n CB HB1 UMQ sing 1009 n n CB HB2 UMQ sing 1010 n n CC CD UMQ sing 1011 n n CC HC1 UMQ sing 1012 n n CC HC2 UMQ sing 1013 n n CD CF UMQ sing 1014 n n CD HD1 UMQ sing 1015 n n CD HD2 UMQ sing 1016 n n CF CG UMQ sing 1017 n n CF HF1 UMQ sing 1018 n n CF HF2 UMQ sing 1019 n n CG CH UMQ sing 1020 n n CG HG1 UMQ sing 1021 n n CG HG2 UMQ sing 1022 n n CH CI UMQ sing 1023 n n CH HH1 UMQ sing 1024 n n CH HH2 UMQ sing 1025 n n CI CJ UMQ sing 1026 n n CI HI1 UMQ sing 1027 n n CI HI2 UMQ sing 1028 n n CJ CK UMQ sing 1029 n n CJ HJ1 UMQ sing 1030 n n CJ HJ2 UMQ sing 1031 n n CK CL UMQ sing 1032 n n CK HK1 UMQ sing 1033 n n CK HK2 UMQ sing 1034 n n CL HL1 UMQ sing 1035 n n CL HL2 UMQ sing 1036 n n CL HL3 UMQ sing 1037 n n # _atom_sites.entry_id 2E74 _atom_sites.fract_transf_matrix[1][1] 0.006315 _atom_sites.fract_transf_matrix[1][2] 0.003646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 1001 1001 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 UMQ A 1 1101 1101 UMQ UMQ . N 11 UMQ A 1 1102 1102 UMQ UMQ . O 11 UMQ A 1 1103 1103 UMQ UMQ . P 11 UMQ A 1 1104 1104 UMQ UMQ . Q 9 CD B 1 161 4 CD CD . R 12 CLA B 1 201 201 CLA CLA . S 13 OPC B 1 202 1 OPC OPC . T 10 HEM C 1 301 301 HEM HEM . U 14 FES D 1 200 200 FES FES . V 15 SQD D 1 201 11 SQD SQD . W 16 BCR G 1 101 101 BCR BCR . X 13 OPC H 1 1002 1002 OPC OPC . Y 17 HOH A 1 1105 2 HOH HOH . Y 17 HOH A 2 1106 401 HOH HOH . Z 17 HOH B 1 211 211 HOH HOH . Z 17 HOH B 2 212 212 HOH HOH . AA 17 HOH C 1 302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMQ . . . P 11 -22.238 101.964 21.801 1 171.44 ? C2 UMQ 1104 A 1 HETATM 2 C C4 UMQ . . . P 11 -23.23 103.518 20.144 1 168.39 ? C4 UMQ 1104 A 1 HETATM 3 C C5 UMQ . . . P 11 -23.186 102.21 19.35 1 166.29 ? C5 UMQ 1104 A 1 HETATM 4 C C6 UMQ . . . P 11 -21.756 101.827 18.966 1 161.07 ? C6 UMQ 1104 A 1 HETATM 5 O O2 UMQ . . . P 11 -21.843 101.754 23.166 1 166.61 ? O2 UMQ 1104 A 1 HETATM 6 O O4 UMQ . . . P 11 -24.465 104.203 19.896 1 163.09 ? O4 UMQ 1104 A 1 HETATM 7 C C1 UMQ . . . P 11 -23.032 100.766 21.282 1 165.32 ? C1 UMQ 1104 A 1 HETATM 8 C C3 UMQ . . . P 11 -23.076 103.233 21.636 1 171.81 ? C3 UMQ 1104 A 1 HETATM 9 O O1 UMQ . . . P 11 -23.92 100.317 22.31 1 149.86 ? O1 UMQ 1104 A 1 HETATM 10 O O3 UMQ . . . P 11 -22.472 104.352 22.3 1 175.69 ? O3 UMQ 1104 A 1 HETATM 11 O O5 UMQ . . . P 11 -23.777 101.147 20.115 1 168.26 ? O5 UMQ 1104 A 1 HETATM 12 O O6 UMQ . . . P 11 -21.527 102.079 17.576 1 154.81 ? O6 UMQ 1104 A 1 HETATM 13 C C1' UMQ . . . P 11 -25.19 96.415 22.847 1 113.59 ? C1' UMQ 1104 A 1 HETATM 14 C C2' UMQ . . . P 11 -23.901 96.69 23.103 1 120.15 ? C2' UMQ 1104 A 1 HETATM 15 C C3' UMQ . . . P 11 -23.36 98.083 23.002 1 124.99 ? C3' UMQ 1104 A 1 HETATM 16 C C4' UMQ . . . P 11 -24.296 98.947 22.17 1 133.81 ? C4' UMQ 1104 A 1 HETATM 17 C C5' UMQ . . . P 11 -25.738 98.772 22.637 1 130.56 ? C5' UMQ 1104 A 1 HETATM 18 C C6' UMQ . . . P 11 -26.69 99.686 21.865 1 134.68 ? C6' UMQ 1104 A 1 HETATM 19 O O1' UMQ . . . P 11 -25.656 95.043 22.962 1 107.38 ? O1' UMQ 1104 A 1 HETATM 20 O O3' UMQ . . . P 11 -22.07 98.026 22.385 1 116.27 ? O3' UMQ 1104 A 1 HETATM 21 O O5' UMQ . . . P 11 -26.161 97.423 22.446 1 111 ? O5' UMQ 1104 A 1 HETATM 22 O O6' UMQ . . . P 11 -26.448 101.061 22.192 1 139.6 ? O6' UMQ 1104 A 1 HETATM 23 O O2' UMQ . . . P 11 -23.058 95.717 23.457 1 112.87 ? O2' UMQ 1104 A 1 HETATM 24 C CA UMQ . . . P 11 -27.034 94.726 23.137 1 93.54 ? CA UMQ 1104 A 1 HETATM 25 C CB UMQ . . . P 11 -27.104 93.294 23.661 1 87.72 ? CB UMQ 1104 A 1 HETATM 26 C CC UMQ . . . P 11 -28.376 92.583 23.219 1 87.64 ? CC UMQ 1104 A 1 HETATM 27 C CD UMQ . . . P 11 -28.222 91.071 23.306 1 86.98 ? CD UMQ 1104 A 1 HETATM 28 C CF UMQ . . . P 11 -29.181 90.481 24.332 1 96.71 ? CF UMQ 1104 A 1 HETATM 29 C CG UMQ . . . P 11 -29.623 89.076 23.935 1 111.58 ? CG UMQ 1104 A 1 HETATM 30 C CH UMQ . . . P 11 -31.011 89.074 23.297 1 130.62 ? CH UMQ 1104 A 1 HETATM 31 C CI UMQ . . . P 11 -32.114 88.84 24.332 1 145.51 ? CI UMQ 1104 A 1 HETATM 32 C CJ UMQ . . . P 11 -33.36 88.208 23.708 1 152.12 ? CJ UMQ 1104 A 1 HETATM 33 C CK UMQ . . . P 11 -33.94 87.096 24.585 1 150.86 ? CK UMQ 1104 A 1 HETATM 34 C CL UMQ . . . P 11 -34.903 86.214 23.812 1 142.98 ? CL UMQ 1104 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #