data_2E74 # _model_server_result.job_id lIeij88ArDrDkd6KymqJVw _model_server_result.datetime_utc '2024-11-15 01:32:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":201}' # _entry.id 2E74 # _exptl.entry_id 2E74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.489 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E74 _cell.length_a 158.343 _cell.length_b 158.343 _cell.length_c 361.094 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.1715 137.129061 60.182333 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 T FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 T FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? covale ? covale2 T CAC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc7 U FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc8 U FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 U FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 U FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C55 H72 Mg N4 O5 2' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2E74 _atom_sites.fract_transf_matrix[1][1] 0.006315 _atom_sites.fract_transf_matrix[1][2] 0.003646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 1001 1001 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 UMQ A 1 1101 1101 UMQ UMQ . N 11 UMQ A 1 1102 1102 UMQ UMQ . O 11 UMQ A 1 1103 1103 UMQ UMQ . P 11 UMQ A 1 1104 1104 UMQ UMQ . Q 9 CD B 1 161 4 CD CD . R 12 CLA B 1 201 201 CLA CLA . S 13 OPC B 1 202 1 OPC OPC . T 10 HEM C 1 301 301 HEM HEM . U 14 FES D 1 200 200 FES FES . V 15 SQD D 1 201 11 SQD SQD . W 16 BCR G 1 101 101 BCR BCR . X 13 OPC H 1 1002 1002 OPC OPC . Y 17 HOH A 1 1105 2 HOH HOH . Y 17 HOH A 2 1106 401 HOH HOH . Z 17 HOH B 1 211 211 HOH HOH . Z 17 HOH B 2 212 212 HOH HOH . AA 17 HOH C 1 302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . R 12 -28.812 58.452 3.082 1 63.72 ? MG CLA 201 B 1 HETATM 2 C CHA CLA . . . R 12 -31.863 58.557 4.616 1 41.95 ? CHA CLA 201 B 1 HETATM 3 C CHB CLA . . . R 12 -28.043 61.479 4.386 1 62.68 ? CHB CLA 201 B 1 HETATM 4 C CHC CLA . . . R 12 -25.84 58.355 1.38 1 58.65 ? CHC CLA 201 B 1 HETATM 5 C CHD CLA . . . R 12 -29.444 55.064 2.125 1 51.59 ? CHD CLA 201 B 1 HETATM 6 N NA CLA . . . R 12 -29.803 59.832 4.167 1 50.61 ? NA CLA 201 B 1 HETATM 7 C C1A CLA . . . R 12 -30.983 59.755 4.664 1 46.16 ? C1A CLA 201 B 1 HETATM 8 C C2A CLA . . . R 12 -31.409 60.992 5.412 1 47.05 ? C2A CLA 201 B 1 HETATM 9 C C3A CLA . . . R 12 -30.274 61.939 5.181 1 41.03 ? C3A CLA 201 B 1 HETATM 10 C C4A CLA . . . R 12 -29.3 61.037 4.507 1 55.35 ? C4A CLA 201 B 1 HETATM 11 C CMA CLA . . . R 12 -30.579 63.138 4.316 1 50.22 ? CMA CLA 201 B 1 HETATM 12 C CAA CLA . . . R 12 -31.41 60.647 6.895 1 59.35 ? CAA CLA 201 B 1 HETATM 13 C CBA CLA . . . R 12 -32.469 61.365 7.733 1 76.22 ? CBA CLA 201 B 1 HETATM 14 C CGA CLA . . . R 12 -32.421 60.658 9.068 1 80.55 ? CGA CLA 201 B 1 HETATM 15 O O1A CLA . . . R 12 -31.369 60.582 9.662 1 79.46 ? O1A CLA 201 B 1 HETATM 16 O O2A CLA . . . R 12 -33.539 59.988 9.708 1 86.11 ? O2A CLA 201 B 1 HETATM 17 N NB CLA . . . R 12 -27.192 59.718 2.922 1 56.62 ? NB CLA 201 B 1 HETATM 18 C C1B CLA . . . R 12 -27.008 60.923 3.511 1 55.04 ? C1B CLA 201 B 1 HETATM 19 C C2B CLA . . . R 12 -25.741 61.634 3.209 1 62.16 ? C2B CLA 201 B 1 HETATM 20 C C3B CLA . . . R 12 -25.106 60.665 2.318 1 66.57 ? C3B CLA 201 B 1 HETATM 21 C C4B CLA . . . R 12 -26.061 59.538 2.219 1 56.07 ? C4B CLA 201 B 1 HETATM 22 C CMB CLA . . . R 12 -25.218 62.968 3.668 1 60.25 ? CMB CLA 201 B 1 HETATM 23 C CAB CLA . . . R 12 -23.782 60.814 1.664 1 68.71 ? CAB CLA 201 B 1 HETATM 24 C CBB CLA . . . R 12 -22.811 59.965 1.933 1 72.18 ? CBB CLA 201 B 1 HETATM 25 N NC CLA . . . R 12 -27.845 57.021 1.969 1 55.01 ? NC CLA 201 B 1 HETATM 26 C C1C CLA . . . R 12 -26.654 57.134 1.342 1 59.41 ? C1C CLA 201 B 1 HETATM 27 C C2C CLA . . . R 12 -26.178 55.932 0.61 1 61.46 ? C2C CLA 201 B 1 HETATM 28 C C3C CLA . . . R 12 -27.25 54.963 0.853 1 68.04 ? C3C CLA 201 B 1 HETATM 29 C C4C CLA . . . R 12 -28.204 55.732 1.688 1 66.74 ? C4C CLA 201 B 1 HETATM 30 C CMC CLA . . . R 12 -24.908 55.756 -0.167 1 62.57 ? CMC CLA 201 B 1 HETATM 31 C CAC CLA . . . R 12 -27.399 53.542 0.372 1 70.01 ? CAC CLA 201 B 1 HETATM 32 C CBC CLA . . . R 12 -28.267 53.543 -0.871 1 65.95 ? CBC CLA 201 B 1 HETATM 33 N ND CLA . . . R 12 -30.278 57.051 3.248 1 52.04 ? ND CLA 201 B 1 HETATM 34 C C1D CLA . . . R 12 -30.478 55.766 2.877 1 55.28 ? C1D CLA 201 B 1 HETATM 35 C C2D CLA . . . R 12 -31.796 55.21 3.337 1 56.53 ? C2D CLA 201 B 1 HETATM 36 C C3D CLA . . . R 12 -32.325 56.385 4.048 1 53.02 ? C3D CLA 201 B 1 HETATM 37 C C4D CLA . . . R 12 -31.406 57.363 3.954 1 44.72 ? C4D CLA 201 B 1 HETATM 38 C CMD CLA . . . R 12 -32.545 53.913 3.231 1 52.16 ? CMD CLA 201 B 1 HETATM 39 C CAD CLA . . . R 12 -33.513 56.872 4.79 1 46.67 ? CAD CLA 201 B 1 HETATM 40 O OBD CLA . . . R 12 -34.577 56.189 5.054 1 54.41 ? OBD CLA 201 B 1 HETATM 41 C CBD CLA . . . R 12 -33.228 58.285 5.208 1 44.32 ? CBD CLA 201 B 1 HETATM 42 C CGD CLA . . . R 12 -34.266 59.259 4.723 1 49.44 ? CGD CLA 201 B 1 HETATM 43 O O1D CLA . . . R 12 -34.048 60.104 3.866 1 50.95 ? O1D CLA 201 B 1 HETATM 44 O O2D CLA . . . R 12 -35.576 59.311 5.302 1 59.78 ? O2D CLA 201 B 1 HETATM 45 C CED CLA . . . R 12 -36.103 60.637 5.356 1 67.64 ? CED CLA 201 B 1 HETATM 46 C C1 CLA . . . R 12 -33.176 59.258 10.89 1 59.36 ? C1 CLA 201 B 1 HETATM 47 C C2 CLA . . . R 12 -33.51 57.772 10.879 1 66.9 ? C2 CLA 201 B 1 HETATM 48 C C3 CLA . . . R 12 -34.513 57.218 10.163 1 60.94 ? C3 CLA 201 B 1 HETATM 49 C C4 CLA . . . R 12 -35.39 58.082 9.279 1 51.26 ? C4 CLA 201 B 1 HETATM 50 C C5 CLA . . . R 12 -34.734 55.721 10.275 1 48.73 ? C5 CLA 201 B 1 HETATM 51 C C6 CLA . . . R 12 -34.393 55.253 11.7 1 46.06 ? C6 CLA 201 B 1 HETATM 52 C C7 CLA . . . R 12 -35.278 54.061 12.069 1 61.94 ? C7 CLA 201 B 1 HETATM 53 C C8 CLA . . . R 12 -34.825 53.221 13.28 1 75.14 ? C8 CLA 201 B 1 HETATM 54 C C9 CLA . . . R 12 -34.848 51.707 12.984 1 80.57 ? C9 CLA 201 B 1 HETATM 55 C C10 CLA . . . R 12 -33.463 53.654 13.815 1 80.56 ? C10 CLA 201 B 1 HETATM 56 C C11 CLA . . . R 12 -33.187 53.086 15.211 1 88.43 ? C11 CLA 201 B 1 HETATM 57 C C12 CLA . . . R 12 -32.167 51.94 15.202 1 93.32 ? C12 CLA 201 B 1 HETATM 58 C C13 CLA . . . R 12 -31.079 52.087 16.272 1 91 ? C13 CLA 201 B 1 HETATM 59 C C14 CLA . . . R 12 -31.595 51.572 17.614 1 87.97 ? C14 CLA 201 B 1 HETATM 60 C C15 CLA . . . R 12 -30.644 53.552 16.325 1 91.84 ? C15 CLA 201 B 1 HETATM 61 C C16 CLA . . . R 12 -29.22 53.8 16.821 1 90.05 ? C16 CLA 201 B 1 HETATM 62 C C17 CLA . . . R 12 -28.823 55.255 16.522 1 91.34 ? C17 CLA 201 B 1 HETATM 63 C C18 CLA . . . R 12 -28.337 56.072 17.726 1 92.6 ? C18 CLA 201 B 1 HETATM 64 C C19 CLA . . . R 12 -29.39 56.164 18.837 1 93.77 ? C19 CLA 201 B 1 HETATM 65 C C20 CLA . . . R 12 -26.994 55.565 18.263 1 99.8 ? C20 CLA 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 744 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 65 #