data_2E74 # _model_server_result.job_id RErAREeIsdQNJ7208-r3uQ _model_server_result.datetime_utc '2024-11-15 01:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 2E74 # _exptl.entry_id 2E74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E74 _cell.length_a 158.343 _cell.length_b 158.343 _cell.length_c 361.094 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.1715 137.129061 60.182333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N ? 10 L N N ? 10 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc5 T FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 T FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? covale ? covale2 T CAC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc7 U FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc8 U FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 U FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 U FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 2E74 _atom_sites.fract_transf_matrix[1][1] 0.006315 _atom_sites.fract_transf_matrix[1][2] 0.003646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 1001 1001 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 UMQ A 1 1101 1101 UMQ UMQ . N 11 UMQ A 1 1102 1102 UMQ UMQ . O 11 UMQ A 1 1103 1103 UMQ UMQ . P 11 UMQ A 1 1104 1104 UMQ UMQ . Q 9 CD B 1 161 4 CD CD . R 12 CLA B 1 201 201 CLA CLA . S 13 OPC B 1 202 1 OPC OPC . T 10 HEM C 1 301 301 HEM HEM . U 14 FES D 1 200 200 FES FES . V 15 SQD D 1 201 11 SQD SQD . W 16 BCR G 1 101 101 BCR BCR . X 13 OPC H 1 1002 1002 OPC OPC . Y 17 HOH A 1 1105 2 HOH HOH . Y 17 HOH A 2 1106 401 HOH HOH . Z 17 HOH B 1 211 211 HOH HOH . Z 17 HOH B 2 212 212 HOH HOH . AA 17 HOH C 1 302 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 10 -50.138 64.386 18.452 1 28.04 ? CHA HEM 301 A 1 HETATM 2 C CHB HEM . . . J 10 -45.902 65.052 16.156 1 37.53 ? CHB HEM 301 A 1 HETATM 3 C CHC HEM . . . J 10 -44.157 67.453 19.878 1 37.95 ? CHC HEM 301 A 1 HETATM 4 C CHD HEM . . . J 10 -48.258 66.688 22.295 1 32.32 ? CHD HEM 301 A 1 HETATM 5 C C1A HEM . . . J 10 -49.118 64.424 17.541 1 26.39 ? C1A HEM 301 A 1 HETATM 6 C C2A HEM . . . J 10 -49.232 63.905 16.205 1 26.51 ? C2A HEM 301 A 1 HETATM 7 C C3A HEM . . . J 10 -48.072 64.108 15.617 1 40.2 ? C3A HEM 301 A 1 HETATM 8 C C4A HEM . . . J 10 -47.173 64.739 16.534 1 42.33 ? C4A HEM 301 A 1 HETATM 9 C CMA HEM . . . J 10 -47.655 63.783 14.194 1 9.83 ? CMA HEM 301 A 1 HETATM 10 C CAA HEM . . . J 10 -50.478 63.291 15.571 1 35.15 ? CAA HEM 301 A 1 HETATM 11 C CBA HEM . . . J 10 -51.414 64.465 15.249 1 41.08 ? CBA HEM 301 A 1 HETATM 12 C CGA HEM . . . J 10 -52.675 63.909 14.666 1 48.85 ? CGA HEM 301 A 1 HETATM 13 O O1A HEM . . . J 10 -52.741 63.824 13.412 1 52.21 ? O1A HEM 301 A 1 HETATM 14 O O2A HEM . . . J 10 -53.572 63.52 15.456 1 37.66 ? O2A HEM 301 A 1 HETATM 15 C C1B HEM . . . J 10 -45.05 65.745 16.918 1 38.64 ? C1B HEM 301 A 1 HETATM 16 C C2B HEM . . . J 10 -43.682 66.11 16.579 1 57.71 ? C2B HEM 301 A 1 HETATM 17 C C3B HEM . . . J 10 -43.237 66.781 17.656 1 49.52 ? C3B HEM 301 A 1 HETATM 18 C C4B HEM . . . J 10 -44.281 66.841 18.651 1 48.06 ? C4B HEM 301 A 1 HETATM 19 C CMB HEM . . . J 10 -42.9 65.795 15.248 1 27.77 ? CMB HEM 301 A 1 HETATM 20 C CAB HEM . . . J 10 -41.853 67.411 17.844 1 39.54 ? CAB HEM 301 A 1 HETATM 21 C CBB HEM . . . J 10 -40.996 67.258 16.828 1 75.31 ? CBB HEM 301 A 1 HETATM 22 C C1C HEM . . . J 10 -45.077 67.415 20.879 1 23.72 ? C1C HEM 301 A 1 HETATM 23 C C2C HEM . . . J 10 -44.884 67.904 22.229 1 33.94 ? C2C HEM 301 A 1 HETATM 24 C C3C HEM . . . J 10 -46.044 67.663 22.88 1 25.89 ? C3C HEM 301 A 1 HETATM 25 C C4C HEM . . . J 10 -46.976 67.052 21.974 1 35.24 ? C4C HEM 301 A 1 HETATM 26 C CMC HEM . . . J 10 -43.585 68.564 22.781 1 13.22 ? CMC HEM 301 A 1 HETATM 27 C CAC HEM . . . J 10 -46.395 67.981 24.331 1 37.75 ? CAC HEM 301 A 1 HETATM 28 C CBC HEM . . . J 10 -46.176 69.204 24.841 1 51.83 ? CBC HEM 301 A 1 HETATM 29 C C1D HEM . . . J 10 -49.157 66.024 21.482 1 26.24 ? C1D HEM 301 A 1 HETATM 30 C C2D HEM . . . J 10 -50.491 65.633 21.865 1 13.89 ? C2D HEM 301 A 1 HETATM 31 C C3D HEM . . . J 10 -51.1 64.9 20.683 1 29.28 ? C3D HEM 301 A 1 HETATM 32 C C4D HEM . . . J 10 -50.05 64.932 19.7 1 29.03 ? C4D HEM 301 A 1 HETATM 33 C CMD HEM . . . J 10 -51.159 65.884 23.215 1 38.35 ? CMD HEM 301 A 1 HETATM 34 C CAD HEM . . . J 10 -52.523 64.287 20.577 1 30.58 ? CAD HEM 301 A 1 HETATM 35 C CBD HEM . . . J 10 -53.439 65.298 19.881 1 20.28 ? CBD HEM 301 A 1 HETATM 36 C CGD HEM . . . J 10 -53.552 64.844 18.466 1 26.56 ? CGD HEM 301 A 1 HETATM 37 O O1D HEM . . . J 10 -53.728 65.658 17.499 1 29.54 ? O1D HEM 301 A 1 HETATM 38 O O2D HEM . . . J 10 -53.436 63.603 18.32 1 45.04 ? O2D HEM 301 A 1 HETATM 39 N NA HEM . . . J 10 -47.831 64.931 17.725 1 31.08 ? NA HEM 301 A 1 HETATM 40 N NB HEM . . . J 10 -45.39 66.187 18.165 1 36.85 ? NB HEM 301 A 1 HETATM 41 N NC HEM . . . J 10 -46.355 66.91 20.752 1 31.42 ? NC HEM 301 A 1 HETATM 42 N ND HEM . . . J 10 -48.929 65.592 20.195 1 26.3 ? ND HEM 301 A 1 HETATM 43 FE FE HEM . . . J 10 -47.087 65.981 19.194 1 28.26 ? FE HEM 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #