data_2E75 # _model_server_result.job_id AYZMnK9UfvXCsKZof-ikYA _model_server_result.datetime_utc '2024-10-19 17:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1001}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 801.148 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C45 H87 N O8 P 1' _chem_comp.formula_weight 801.148 _chem_comp.id OPC _chem_comp.mon_nstd_flag . _chem_comp.name '(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIOLEOYL-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF OPC . . . T 11 -27.713 43.076 1.003 1 57.02 ? CBF OPC 1001 B 1 HETATM 2 C CBE OPC . . . T 11 -26.53 43.177 1.951 1 93.07 ? CBE OPC 1001 B 1 HETATM 3 C CBD OPC . . . T 11 -25.864 44.569 2.024 1 107.74 ? CBD OPC 1001 B 1 HETATM 4 C CBC OPC . . . T 11 -26.278 45.711 2.676 1 128.91 ? CBC OPC 1001 B 1 HETATM 5 C CBB OPC . . . T 11 -25.528 46.859 2.638 1 135.04 ? CBB OPC 1001 B 1 HETATM 6 C CBA OPC . . . T 11 -25.759 48.258 3.256 1 118.33 ? CBA OPC 1001 B 1 HETATM 7 C CAZ OPC . . . T 11 -25.598 49.463 2.255 1 134.36 ? CAZ OPC 1001 B 1 HETATM 8 C CAY OPC . . . T 11 -24.218 49.84 1.605 1 138.58 ? CAY OPC 1001 B 1 HETATM 9 C CAX OPC . . . T 11 -23.985 51.298 1.063 1 136.69 ? CAX OPC 1001 B 1 HETATM 10 C CAW OPC . . . T 11 -22.769 51.535 0.111 1 144.94 ? CAW OPC 1001 B 1 HETATM 11 C CAV OPC . . . T 11 -21.571 52.46 0.513 1 148.34 ? CAV OPC 1001 B 1 HETATM 12 C CAU OPC . . . T 11 -20.27 51.763 1.065 1 157.98 ? CAU OPC 1001 B 1 HETATM 13 C CAT OPC . . . T 11 -18.812 52.087 0.563 1 125.89 ? CAT OPC 1001 B 1 HETATM 14 C CAS OPC . . . T 11 -17.971 53.197 1.264 1 120.67 ? CAS OPC 1001 B 1 HETATM 15 C CAR OPC . . . T 11 -17.272 54.122 0.523 1 117.07 ? CAR OPC 1001 B 1 HETATM 16 C CAQ OPC . . . T 11 -16.488 55.176 0.926 1 96.92 ? CAQ OPC 1001 B 1 HETATM 17 C CAP OPC . . . T 11 -15.859 56.028 0.067 1 68.85 ? CAP OPC 1001 B 1 HETATM 18 C CAO OPC . . . T 11 -15.001 57.21 0.378 1 66.91 ? CAO OPC 1001 B 1 HETATM 19 O OAD OPC . . . T 11 -13.999 57.164 1 1 65.91 ? OAD OPC 1001 B 1 HETATM 20 O OAN OPC . . . T 11 -15.236 58.531 -0.147 1 70.39 ? OAN OPC 1001 B 1 HETATM 21 C CAM OPC . . . T 11 -15.571 59.706 0.591 1 48.39 ? CAM OPC 1001 B 1 HETATM 22 C CAL OPC . . . T 11 -14.69 60.86 0.05 1 8.57 ? CAL OPC 1001 B 1 HETATM 23 O OAK OPC . . . T 11 -15.371 61.654 -1.012 1 24.55 ? OAK OPC 1001 B 1 HETATM 24 P PAJ OPC . . . T 11 -14.733 63.026 -1.7 1 56.73 ? PAJ OPC 1001 B 1 HETATM 25 O OBH OPC . . . T 11 -14.507 64.125 -0.649 1 23.38 ? OBH OPC 1001 B 1 HETATM 26 O OAB OPC . . . T 11 -15.339 63.453 -3.056 1 36.19 ? OAB OPC 1001 B 1 HETATM 27 O OAI OPC . . . T 11 -13.36 62.209 -2.039 1 95.19 ? OAI OPC 1001 B 1 HETATM 28 C CAH OPC . . . T 11 -12.013 62.641 -1.668 1 124.01 ? CAH OPC 1001 B 1 HETATM 29 C CAG OPC . . . T 11 -11.096 63.069 -2.569 1 125.99 ? CAG OPC 1001 B 1 HETATM 30 N NAF OPC . . . T 11 -11.282 63.102 -3.929 1 103.07 ? NAF OPC 1001 B 1 HETATM 31 C CAE OPC . . . T 11 -10.285 62.86 -4.886 1 54.52 ? CAE OPC 1001 B 1 HETATM 32 C CBG OPC . . . T 11 -12.354 62.2 -4.361 1 110.76 ? CBG OPC 1001 B 1 HETATM 33 C CAA OPC . . . T 11 -11.36 64.609 -4.101 1 54.2 ? CAA OPC 1001 B 1 HETATM 34 C CBI OPC . . . T 11 -17.008 60.061 0.15 1 61.69 ? CBI OPC 1001 B 1 HETATM 35 O OBJ OPC . . . T 11 -17.985 59.052 0.401 1 59.56 ? OBJ OPC 1001 B 1 HETATM 36 C CBK OPC . . . T 11 -19.012 59.364 1.396 1 79.55 ? CBK OPC 1001 B 1 HETATM 37 O OCC OPC . . . T 11 -19.169 60.626 1.635 1 40.98 ? OCC OPC 1001 B 1 HETATM 38 C CBL OPC . . . T 11 -19.682 58.088 2.079 1 66.8 ? CBL OPC 1001 B 1 HETATM 39 C CBM OPC . . . T 11 -21.202 57.641 2.044 1 53.29 ? CBM OPC 1001 B 1 HETATM 40 C CBN OPC . . . T 11 -21.902 57.188 3.373 1 54.43 ? CBN OPC 1001 B 1 HETATM 41 C CBO OPC . . . T 11 -23.383 56.651 3.607 1 72.86 ? CBO OPC 1001 B 1 HETATM 42 C CBP OPC . . . T 11 -24.504 57.244 4.221 1 70.06 ? CBP OPC 1001 B 1 HETATM 43 C CBQ OPC . . . T 11 -25.786 56.762 4.458 1 51.38 ? CBQ OPC 1001 B 1 HETATM 44 C CBR OPC . . . T 11 -26.247 55.518 4.147 1 52.63 ? CBR OPC 1001 B 1 HETATM 45 C CBS OPC . . . T 11 -27.495 55.072 4.368 1 44.16 ? CBS OPC 1001 B 1 HETATM 46 C CBT OPC . . . T 11 -28.183 53.915 4.114 1 56.86 ? CBT OPC 1001 B 1 HETATM 47 C CBU OPC . . . T 11 -27.984 52.518 3.512 1 56.93 ? CBU OPC 1001 B 1 HETATM 48 C CBV OPC . . . T 11 -29.331 51.673 3.413 1 78.6 ? CBV OPC 1001 B 1 HETATM 49 C CBW OPC . . . T 11 -30.301 51.627 2.169 1 65.31 ? CBW OPC 1001 B 1 HETATM 50 C CBX OPC . . . T 11 -31.064 50.272 1.844 1 103.43 ? CBX OPC 1001 B 1 HETATM 51 C CBY OPC . . . T 11 -31.864 50.014 0.466 1 131.48 ? CBY OPC 1001 B 1 HETATM 52 C CBZ OPC . . . T 11 -32.551 48.622 -0.002 1 118.63 ? CBZ OPC 1001 B 1 HETATM 53 C CCA OPC . . . T 11 -33.485 48.524 -1.297 1 90.14 ? CCA OPC 1001 B 1 HETATM 54 C CCB OPC . . . T 11 -34.374 47.297 -1.707 1 52.5 ? CCB OPC 1001 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #