data_2E75 # _model_server_result.job_id mjHs_JOzAzH4pLCHVWeyFg _model_server_result.datetime_utc '2024-11-22 06:01:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1002}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 801.148 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C45 H87 N O8 P 1' _chem_comp.formula_weight 801.148 _chem_comp.id OPC _chem_comp.mon_nstd_flag . _chem_comp.name '(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIOLEOYL-PHOSPHATIDYLCHOLINE # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF OPC . . . M 11 -43.264 79.469 -12.166 1 62.27 ? CBF OPC 1002 A 1 HETATM 2 C CBE OPC . . . M 11 -44.433 80.329 -11.691 1 73.7 ? CBE OPC 1002 A 1 HETATM 3 C CBD OPC . . . M 11 -44.074 81.824 -11.819 1 90.64 ? CBD OPC 1002 A 1 HETATM 4 C CBC OPC . . . M 11 -44.957 82.89 -11.698 1 109.66 ? CBC OPC 1002 A 1 HETATM 5 C CBB OPC . . . M 11 -44.641 84.247 -11.837 1 100.01 ? CBB OPC 1002 A 1 HETATM 6 C CBA OPC . . . M 11 -45.515 85.537 -11.693 1 45.71 ? CBA OPC 1002 A 1 HETATM 7 C CAZ OPC . . . M 11 -47.007 85.165 -11.47 1 49.52 ? CAZ OPC 1002 A 1 HETATM 8 C CAY OPC . . . M 11 -47.567 83.731 -11.789 1 56.74 ? CAY OPC 1002 A 1 HETATM 9 C CAX OPC . . . M 11 -47.793 82.553 -10.734 1 64.53 ? CAX OPC 1002 A 1 HETATM 10 C CAW OPC . . . M 11 -49.113 82.491 -9.875 1 29.24 ? CAW OPC 1002 A 1 HETATM 11 C CAV OPC . . . M 11 -49.941 81.191 -9.93 1 22.89 ? CAV OPC 1002 A 1 HETATM 12 C CAU OPC . . . M 11 -51.23 81.292 -9.014 1 44.02 ? CAU OPC 1002 A 1 HETATM 13 C CAT OPC . . . M 11 -52.095 79.99 -8.719 1 46.55 ? CAT OPC 1002 A 1 HETATM 14 C CAS OPC . . . M 11 -53.277 80.396 -7.852 1 55.43 ? CAS OPC 1002 A 1 HETATM 15 C CAR OPC . . . M 11 -54.296 79.728 -7.254 1 64.29 ? CAR OPC 1002 A 1 HETATM 16 C CAQ OPC . . . M 11 -54.789 78.469 -7.177 1 39.42 ? CAQ OPC 1002 A 1 HETATM 17 C CAP OPC . . . M 11 -55.902 78.501 -6.387 1 22.99 ? CAP OPC 1002 A 1 HETATM 18 C CAO OPC . . . M 11 -56.823 77.371 -6.047 1 64.1 ? CAO OPC 1002 A 1 HETATM 19 O OAD OPC . . . M 11 -57.939 77.714 -5.621 1 65.27 ? OAD OPC 1002 A 1 HETATM 20 O OAN OPC . . . M 11 -56.431 75.932 -6.252 1 93.58 ? OAN OPC 1002 A 1 HETATM 21 C CAM OPC . . . M 11 -57.063 74.778 -5.576 1 126.43 ? CAM OPC 1002 A 1 HETATM 22 C CAL OPC . . . M 11 -57.488 73.788 -6.657 1 163.16 ? CAL OPC 1002 A 1 HETATM 23 O OAK OPC . . . M 11 -58.672 73.073 -6.297 1 196.28 ? OAK OPC 1002 A 1 HETATM 24 P PAJ OPC . . . M 11 -60.082 73.387 -7.036 1 211.14 ? PAJ OPC 1002 A 1 HETATM 25 O OBH OPC . . . M 11 -60.519 74.793 -6.602 1 179.9 ? OBH OPC 1002 A 1 HETATM 26 O OAB OPC . . . M 11 -60.995 72.234 -6.7 1 206.58 ? OAB OPC 1002 A 1 HETATM 27 O OAI OPC . . . M 11 -59.748 73.241 -8.654 1 220.91 ? OAI OPC 1002 A 1 HETATM 28 C CAH OPC . . . M 11 -59.333 71.974 -9.312 1 209.13 ? CAH OPC 1002 A 1 HETATM 29 C CAG OPC . . . M 11 -59.15 71.711 -10.631 1 193.05 ? CAG OPC 1002 A 1 HETATM 30 N NAF OPC . . . M 11 -59.319 72.608 -11.733 1 186.49 ? NAF OPC 1002 A 1 HETATM 31 C CAE OPC . . . M 11 -59.722 72.079 -13.055 1 177.16 ? CAE OPC 1002 A 1 HETATM 32 C CBG OPC . . . M 11 -58.861 74.008 -11.618 1 176.37 ? CBG OPC 1002 A 1 HETATM 33 C CAA OPC . . . M 11 -57.952 72.229 -12.133 1 171.65 ? CAA OPC 1002 A 1 HETATM 34 C CBI OPC . . . M 11 -56.241 73.837 -4.645 1 100.21 ? CBI OPC 1002 A 1 HETATM 35 O OBJ OPC . . . M 11 -55.183 74.489 -3.934 1 97.18 ? OBJ OPC 1002 A 1 HETATM 36 C CBK OPC . . . M 11 -53.835 74.574 -4.531 1 102.27 ? CBK OPC 1002 A 1 HETATM 37 O OCC OPC . . . M 11 -53.434 73.776 -5.404 1 112.84 ? OCC OPC 1002 A 1 HETATM 38 C CBL OPC . . . M 11 -52.902 75.664 -4.065 1 63.39 ? CBL OPC 1002 A 1 HETATM 39 C CBM OPC . . . M 11 -51.485 75.097 -4.203 1 69.82 ? CBM OPC 1002 A 1 HETATM 40 C CBN OPC . . . M 11 -51.153 74.69 -2.777 1 64.04 ? CBN OPC 1002 A 1 HETATM 41 C CBO OPC . . . M 11 -49.945 75.349 -2.176 1 46.04 ? CBO OPC 1002 A 1 HETATM 42 C CBP OPC . . . M 11 -48.835 75.014 -2.762 1 23.93 ? CBP OPC 1002 A 1 HETATM 43 C CBQ OPC . . . M 11 -47.705 75.486 -2.296 1 48.39 ? CBQ OPC 1002 A 1 HETATM 44 C CBR OPC . . . M 11 -47.444 76.302 -1.253 1 54.77 ? CBR OPC 1002 A 1 HETATM 45 C CBS OPC . . . M 11 -46.108 76.509 -1.187 1 57.03 ? CBS OPC 1002 A 1 HETATM 46 C CBT OPC . . . M 11 -45.335 77.248 -0.399 1 38.93 ? CBT OPC 1002 A 1 HETATM 47 C CBU OPC . . . M 11 -45.934 77.954 0.767 1 47.15 ? CBU OPC 1002 A 1 HETATM 48 C CBV OPC . . . M 11 -45.99 76.769 1.761 1 63.16 ? CBV OPC 1002 A 1 HETATM 49 C CBW OPC . . . M 11 -44.626 76.267 2.274 1 31.02 ? CBW OPC 1002 A 1 HETATM 50 C CBX OPC . . . M 11 -44.235 77.25 3.358 1 14.11 ? CBX OPC 1002 A 1 HETATM 51 C CBY OPC . . . M 11 -43.728 76.295 4.398 1 26.38 ? CBY OPC 1002 A 1 HETATM 52 C CBZ OPC . . . M 11 -42.978 77.012 5.535 1 35.62 ? CBZ OPC 1002 A 1 HETATM 53 C CCA OPC . . . M 11 -42.695 75.916 6.563 1 37.04 ? CCA OPC 1002 A 1 HETATM 54 C CCB OPC . . . M 11 -43.543 74.671 6.234 1 2.6 ? CCB OPC 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 54 #