data_2E75 # _model_server_result.job_id oWDY-V-DNe_vGo8d4EmnSA _model_server_result.datetime_utc '2024-10-19 17:19:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":101}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.873 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-CAROTENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # _struct_asym.details ? _struct_asym.entity_id 17 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id BCR _chem_comp.mon_nstd_flag . _chem_comp.name BETA-CAROTENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BCR . . . Y 17 -37.536 80.797 4.715 1 37.18 ? C1 BCR 101 G 1 HETATM 2 C C2 BCR . . . Y 17 -38.285 82.142 5.001 1 13.94 ? C2 BCR 101 G 1 HETATM 3 C C3 BCR . . . Y 17 -39.781 81.966 5.337 1 12.43 ? C3 BCR 101 G 1 HETATM 4 C C4 BCR . . . Y 17 -40.317 80.536 5.337 1 2 ? C4 BCR 101 G 1 HETATM 5 C C5 BCR . . . Y 17 -39.654 79.969 4.122 1 11.11 ? C5 BCR 101 G 1 HETATM 6 C C6 BCR . . . Y 17 -38.358 79.766 4.036 1 27.48 ? C6 BCR 101 G 1 HETATM 7 C C7 BCR . . . Y 17 -37.826 78.84 3.362 1 14.02 ? C7 BCR 101 G 1 HETATM 8 C C8 BCR . . . Y 17 -37.483 77.942 2.75 1 36.69 ? C8 BCR 101 G 1 HETATM 9 C C9 BCR . . . Y 17 -37.328 76.935 2.089 1 40.45 ? C9 BCR 101 G 1 HETATM 10 C C10 BCR . . . Y 17 -36.654 76.986 0.948 1 50.56 ? C10 BCR 101 G 1 HETATM 11 C C11 BCR . . . Y 17 -36.022 77.978 0.281 1 54.02 ? C11 BCR 101 G 1 HETATM 12 C C33 BCR . . . Y 17 -40.373 79.771 2.837 1 30.94 ? C33 BCR 101 G 1 HETATM 13 C C31 BCR . . . Y 17 -37.287 80.188 6.071 1 49.98 ? C31 BCR 101 G 1 HETATM 14 C C32 BCR . . . Y 17 -36.283 80.791 3.789 1 14.9 ? C32 BCR 101 G 1 HETATM 15 C C34 BCR . . . Y 17 -37.94 75.611 2.477 1 40.23 ? C34 BCR 101 G 1 HETATM 16 C C12 BCR . . . Y 17 -35.432 77.609 -0.896 1 50.51 ? C12 BCR 101 G 1 HETATM 17 C C13 BCR . . . Y 17 -34.737 78.299 -1.824 1 48.25 ? C13 BCR 101 G 1 HETATM 18 C C14 BCR . . . Y 17 -34.333 77.518 -2.902 1 48.85 ? C14 BCR 101 G 1 HETATM 19 C C15 BCR . . . Y 17 -33.604 78.11 -3.883 1 53.66 ? C15 BCR 101 G 1 HETATM 20 C C16 BCR . . . Y 17 -33.042 77.675 -5.032 1 51.43 ? C16 BCR 101 G 1 HETATM 21 C C17 BCR . . . Y 17 -32.351 78.478 -5.904 1 44.79 ? C17 BCR 101 G 1 HETATM 22 C C18 BCR . . . Y 17 -31.806 78.028 -7.092 1 49.51 ? C18 BCR 101 G 1 HETATM 23 C C19 BCR . . . Y 17 -31.125 78.889 -7.868 1 51.4 ? C19 BCR 101 G 1 HETATM 24 C C20 BCR . . . Y 17 -30.615 78.276 -8.999 1 72.34 ? C20 BCR 101 G 1 HETATM 25 C C21 BCR . . . Y 17 -29.855 78.772 -10.116 1 77.54 ? C21 BCR 101 G 1 HETATM 26 C C22 BCR . . . Y 17 -29.31 78.138 -11.304 1 63.72 ? C22 BCR 101 G 1 HETATM 27 C C23 BCR . . . Y 17 -28.645 78.937 -12.109 1 38.44 ? C23 BCR 101 G 1 HETATM 28 C C24 BCR . . . Y 17 -28.14 79.878 -12.632 1 107.02 ? C24 BCR 101 G 1 HETATM 29 C C25 BCR . . . Y 17 -27.684 81.041 -12.991 1 149.46 ? C25 BCR 101 G 1 HETATM 30 C C26 BCR . . . Y 17 -28.327 82.187 -12.395 1 144.83 ? C26 BCR 101 G 1 HETATM 31 C C27 BCR . . . Y 17 -27.417 83.327 -11.845 1 127.43 ? C27 BCR 101 G 1 HETATM 32 C C28 BCR . . . Y 17 -25.927 83.158 -12.258 1 136.24 ? C28 BCR 101 G 1 HETATM 33 C C29 BCR . . . Y 17 -25.694 82.46 -13.643 1 145.93 ? C29 BCR 101 G 1 HETATM 34 C C30 BCR . . . Y 17 -26.43 81.118 -13.967 1 147.74 ? C30 BCR 101 G 1 HETATM 35 C C35 BCR . . . Y 17 -34.414 79.805 -1.644 1 33.39 ? C35 BCR 101 G 1 HETATM 36 C C36 BCR . . . Y 17 -31.855 76.591 -7.654 1 36.37 ? C36 BCR 101 G 1 HETATM 37 C C37 BCR . . . Y 17 -29.546 76.602 -11.517 1 53.89 ? C37 BCR 101 G 1 HETATM 38 C C38 BCR . . . Y 17 -29.882 82.377 -12.221 1 56.86 ? C38 BCR 101 G 1 HETATM 39 C C39 BCR . . . Y 17 -25.378 79.997 -13.778 1 110.1 ? C39 BCR 101 G 1 HETATM 40 C C40 BCR . . . Y 17 -26.849 80.999 -15.488 1 99.76 ? C40 BCR 101 G 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #