data_2E75 # _model_server_result.job_id b1IapIW4rFc8RTcscvyXEA _model_server_result.datetime_utc '2024-11-22 06:10:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":201}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.489 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C55 H72 Mg N4 O5 2' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . S 14 -29.794 59.115 2.92 1 38.54 ? MG CLA 201 B 1 HETATM 2 C CHA CLA . . . S 14 -32.777 59.008 4.644 1 23.51 ? CHA CLA 201 B 1 HETATM 3 C CHB CLA . . . S 14 -29.056 62.212 4.071 1 28.59 ? CHB CLA 201 B 1 HETATM 4 C CHC CLA . . . S 14 -26.602 58.88 1.519 1 30.19 ? CHC CLA 201 B 1 HETATM 5 C CHD CLA . . . S 14 -30.433 55.851 1.894 1 39.28 ? CHD CLA 201 B 1 HETATM 6 N NA CLA . . . S 14 -30.731 60.368 4.146 1 27.52 ? NA CLA 201 B 1 HETATM 7 C C1A CLA . . . S 14 -31.891 60.193 4.707 1 19.21 ? C1A CLA 201 B 1 HETATM 8 C C2A CLA . . . S 14 -32.243 61.35 5.557 1 23.49 ? C2A CLA 201 B 1 HETATM 9 C C3A CLA . . . S 14 -31.101 62.312 5.372 1 37.05 ? C3A CLA 201 B 1 HETATM 10 C C4A CLA . . . S 14 -30.189 61.575 4.473 1 35.07 ? C4A CLA 201 B 1 HETATM 11 C CMA CLA . . . S 14 -31.504 63.549 4.59 1 46.49 ? CMA CLA 201 B 1 HETATM 12 C CAA CLA . . . S 14 -32.176 60.984 7.001 1 45.79 ? CAA CLA 201 B 1 HETATM 13 C CBA CLA . . . S 14 -33.341 61.716 7.673 1 72.06 ? CBA CLA 201 B 1 HETATM 14 C CGA CLA . . . S 14 -33.291 60.985 8.966 1 72.33 ? CGA CLA 201 B 1 HETATM 15 O O1A CLA . . . S 14 -32.137 60.673 9.281 1 55.27 ? O1A CLA 201 B 1 HETATM 16 O O2A CLA . . . S 14 -34.456 60.574 9.765 1 66.62 ? O2A CLA 201 B 1 HETATM 17 N NB CLA . . . S 14 -28.127 60.349 2.831 1 39.02 ? NB CLA 201 B 1 HETATM 18 C C1B CLA . . . S 14 -27.938 61.603 3.345 1 43.57 ? C1B CLA 201 B 1 HETATM 19 C C2B CLA . . . S 14 -26.574 62.207 3.068 1 49.28 ? C2B CLA 201 B 1 HETATM 20 C C3B CLA . . . S 14 -25.987 61.179 2.334 1 46.91 ? C3B CLA 201 B 1 HETATM 21 C C4B CLA . . . S 14 -26.928 60.069 2.274 1 38.9 ? C4B CLA 201 B 1 HETATM 22 C CMB CLA . . . S 14 -25.685 63.395 3.261 1 36.58 ? CMB CLA 201 B 1 HETATM 23 C CAB CLA . . . S 14 -24.628 61.315 1.876 1 43.93 ? CAB CLA 201 B 1 HETATM 24 C CBB CLA . . . S 14 -24.006 60.172 2.105 1 78.94 ? CBB CLA 201 B 1 HETATM 25 N NC CLA . . . S 14 -28.76 57.707 1.874 1 45.09 ? NC CLA 201 B 1 HETATM 26 C C1C CLA . . . S 14 -27.512 57.761 1.382 1 46.52 ? C1C CLA 201 B 1 HETATM 27 C C2C CLA . . . S 14 -27.078 56.569 0.664 1 46.87 ? C2C CLA 201 B 1 HETATM 28 C C3C CLA . . . S 14 -28.202 55.645 0.838 1 41.88 ? C3C CLA 201 B 1 HETATM 29 C C4C CLA . . . S 14 -29.157 56.464 1.566 1 40.91 ? C4C CLA 201 B 1 HETATM 30 C CMC CLA . . . S 14 -25.744 56.394 0.018 1 53.55 ? CMC CLA 201 B 1 HETATM 31 C CAC CLA . . . S 14 -28.47 54.266 0.327 1 30.56 ? CAC CLA 201 B 1 HETATM 32 C CBC CLA . . . S 14 -28.885 54.707 -1.078 1 42.48 ? CBC CLA 201 B 1 HETATM 33 N ND CLA . . . S 14 -31.282 57.694 3.063 1 27.41 ? ND CLA 201 B 1 HETATM 34 C C1D CLA . . . S 14 -31.443 56.42 2.724 1 26.44 ? C1D CLA 201 B 1 HETATM 35 C C2D CLA . . . S 14 -32.678 55.748 3.219 1 29.71 ? C2D CLA 201 B 1 HETATM 36 C C3D CLA . . . S 14 -33.267 56.862 3.981 1 44.47 ? C3D CLA 201 B 1 HETATM 37 C C4D CLA . . . S 14 -32.362 57.872 3.887 1 39.06 ? C4D CLA 201 B 1 HETATM 38 C CMD CLA . . . S 14 -33.344 54.424 3.031 1 26.63 ? CMD CLA 201 B 1 HETATM 39 C CAD CLA . . . S 14 -34.431 57.267 4.863 1 43.52 ? CAD CLA 201 B 1 HETATM 40 O OBD CLA . . . S 14 -35.586 56.686 5.184 1 29.35 ? OBD CLA 201 B 1 HETATM 41 C CBD CLA . . . S 14 -34.096 58.663 5.27 1 39.61 ? CBD CLA 201 B 1 HETATM 42 C CGD CLA . . . S 14 -35.181 59.45 4.662 1 39.17 ? CGD CLA 201 B 1 HETATM 43 O O1D CLA . . . S 14 -34.987 60.003 3.611 1 52.9 ? O1D CLA 201 B 1 HETATM 44 O O2D CLA . . . S 14 -36.413 59.682 5.351 1 35.36 ? O2D CLA 201 B 1 HETATM 45 C CED CLA . . . S 14 -36.306 61.083 5.669 1 34.73 ? CED CLA 201 B 1 HETATM 46 C C1 CLA . . . S 14 -34.004 59.59 10.737 1 57.53 ? C1 CLA 201 B 1 HETATM 47 C C2 CLA . . . S 14 -34.525 58.159 10.668 1 56.27 ? C2 CLA 201 B 1 HETATM 48 C C3 CLA . . . S 14 -35.518 57.752 9.844 1 44.71 ? C3 CLA 201 B 1 HETATM 49 C C4 CLA . . . S 14 -36.162 58.78 8.904 1 22.53 ? C4 CLA 201 B 1 HETATM 50 C C5 CLA . . . S 14 -35.96 56.288 9.968 1 12.39 ? C5 CLA 201 B 1 HETATM 51 C C6 CLA . . . S 14 -35.1 55.57 11.017 1 33.98 ? C6 CLA 201 B 1 HETATM 52 C C7 CLA . . . S 14 -35.725 55.215 12.372 1 20.38 ? C7 CLA 201 B 1 HETATM 53 C C8 CLA . . . S 14 -35.281 53.857 13.03 1 58.73 ? C8 CLA 201 B 1 HETATM 54 C C9 CLA . . . S 14 -35.457 52.572 12.146 1 47.24 ? C9 CLA 201 B 1 HETATM 55 C C10 CLA . . . S 14 -33.918 53.862 13.811 1 50.5 ? C10 CLA 201 B 1 HETATM 56 C C11 CLA . . . S 14 -33.909 53.082 15.172 1 58.44 ? C11 CLA 201 B 1 HETATM 57 C C12 CLA . . . S 14 -32.7 52.236 15.698 1 50.74 ? C12 CLA 201 B 1 HETATM 58 C C13 CLA . . . S 14 -31.361 52.994 16.075 1 69.32 ? C13 CLA 201 B 1 HETATM 59 C C14 CLA . . . S 14 -30.147 52.212 16.644 1 48.68 ? C14 CLA 201 B 1 HETATM 60 C C15 CLA . . . S 14 -31.468 54.25 16.95 1 63.25 ? C15 CLA 201 B 1 HETATM 61 C C16 CLA . . . S 14 -30.217 55.08 16.617 1 40.28 ? C16 CLA 201 B 1 HETATM 62 C C17 CLA . . . S 14 -29.46 55.459 17.88 1 66.2 ? C17 CLA 201 B 1 HETATM 63 C C18 CLA . . . S 14 -28.065 56.028 17.542 1 102.52 ? C18 CLA 201 B 1 HETATM 64 C C19 CLA . . . S 14 -28.224 57.548 17.612 1 104.74 ? C19 CLA 201 B 1 HETATM 65 C C20 CLA . . . S 14 -26.808 55.48 18.313 1 111.15 ? C20 CLA 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 65 #