data_2E75 # _model_server_result.job_id 9uYHtEyBiITnOyhyGlJ3FA _model_server_result.datetime_utc '2024-11-22 06:38:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":201}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 795.116 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . X 16 -32.324 99.188 20.983 1 80 ? O6 SQD 201 D 1 HETATM 2 C C44 SQD . . . X 16 -32.784 98.231 21.972 1 112.32 ? C44 SQD 201 D 1 HETATM 3 C C45 SQD . . . X 16 -33.863 98.64 22.978 1 153.56 ? C45 SQD 201 D 1 HETATM 4 C C46 SQD . . . X 16 -34.056 100.159 23.072 1 158.74 ? C46 SQD 201 D 1 HETATM 5 O O47 SQD . . . X 16 -35.148 98.002 22.784 1 183.25 ? O47 SQD 201 D 1 HETATM 6 C C7 SQD . . . X 16 -35.33 96.791 21.959 1 183.85 ? C7 SQD 201 D 1 HETATM 7 O O49 SQD . . . X 16 -35.88 97.024 20.89 1 180.72 ? O49 SQD 201 D 1 HETATM 8 C C8 SQD . . . X 16 -34.943 95.335 22.324 1 165.34 ? C8 SQD 201 D 1 HETATM 9 C C9 SQD . . . X 16 -35.876 94.568 23.294 1 182.68 ? C9 SQD 201 D 1 HETATM 10 C C10 SQD . . . X 16 -37.261 94.128 22.81 1 185.31 ? C10 SQD 201 D 1 HETATM 11 C C11 SQD . . . X 16 -37.95 93.194 23.377 1 191.67 ? C11 SQD 201 D 1 HETATM 12 C C12 SQD . . . X 16 -38.358 92.096 23.819 1 200.65 ? C12 SQD 201 D 1 HETATM 13 C C13 SQD . . . X 16 -38.616 90.827 23.842 1 204.55 ? C13 SQD 201 D 1 HETATM 14 C C14 SQD . . . X 16 -39.468 89.996 24.499 1 183.91 ? C14 SQD 201 D 1 HETATM 15 C C15 SQD . . . X 16 -40.456 90.154 25.4 1 170.56 ? C15 SQD 201 D 1 HETATM 16 C C16 SQD . . . X 16 -40.921 91.19 25.975 1 170.24 ? C16 SQD 201 D 1 HETATM 17 C C17 SQD . . . X 16 -41.461 92.046 26.626 1 177.6 ? C17 SQD 201 D 1 HETATM 18 C C18 SQD . . . X 16 -41.951 92.969 27.364 1 182.3 ? C18 SQD 201 D 1 HETATM 19 C C19 SQD . . . X 16 -42.736 92.759 28.455 1 198.85 ? C19 SQD 201 D 1 HETATM 20 C C20 SQD . . . X 16 -43.216 93.78 29.213 1 203.3 ? C20 SQD 201 D 1 HETATM 21 C C21 SQD . . . X 16 -43.99 93.681 30.233 1 191.39 ? C21 SQD 201 D 1 HETATM 22 C C22 SQD . . . X 16 -44.807 93.645 31.204 1 167 ? C22 SQD 201 D 1 HETATM 23 O O48 SQD . . . X 16 -34.923 100.592 22.024 1 162.61 ? O48 SQD 201 D 1 HETATM 24 C C23 SQD . . . X 16 -36.374 100.776 22.114 1 165.25 ? C23 SQD 201 D 1 HETATM 25 O O10 SQD . . . X 16 -36.786 101.839 22.556 1 185.15 ? O10 SQD 201 D 1 HETATM 26 C C24 SQD . . . X 16 -37.324 99.701 21.581 1 142.8 ? C24 SQD 201 D 1 HETATM 27 C C25 SQD . . . X 16 -38.647 99.539 22.373 1 136.88 ? C25 SQD 201 D 1 HETATM 28 C C26 SQD . . . X 16 -39.904 100.303 21.874 1 124.3 ? C26 SQD 201 D 1 HETATM 29 C C27 SQD . . . X 16 -41.234 99.618 22.269 1 118.12 ? C27 SQD 201 D 1 HETATM 30 C C28 SQD . . . X 16 -42.426 99.851 21.311 1 122.74 ? C28 SQD 201 D 1 HETATM 31 C C29 SQD . . . X 16 -43.587 98.822 21.353 1 123.39 ? C29 SQD 201 D 1 HETATM 32 C C30 SQD . . . X 16 -45.032 99.4 21.444 1 176.34 ? C30 SQD 201 D 1 HETATM 33 C C31 SQD . . . X 16 -45.775 99.61 20.097 1 193.71 ? C31 SQD 201 D 1 HETATM 34 C C32 SQD . . . X 16 -46.937 99.028 19.612 1 200.96 ? C32 SQD 201 D 1 HETATM 35 C C33 SQD . . . X 16 -47.628 99.203 18.398 1 201.53 ? C33 SQD 201 D 1 HETATM 36 C C34 SQD . . . X 16 -47.359 100.026 17.314 1 202.09 ? C34 SQD 201 D 1 HETATM 37 C C35 SQD . . . X 16 -48.013 100.22 16.123 1 188.9 ? C35 SQD 201 D 1 HETATM 38 C C36 SQD . . . X 16 -49.127 99.589 15.742 1 190.03 ? C36 SQD 201 D 1 HETATM 39 C C37 SQD . . . X 16 -49.701 99.823 14.563 1 188.36 ? C37 SQD 201 D 1 HETATM 40 C C38 SQD . . . X 16 -50.801 99.153 14.243 1 191.09 ? C38 SQD 201 D 1 HETATM 41 C C1 SQD . . . X 16 -31.914 98.4 19.804 1 70.4 ? C1 SQD 201 D 1 HETATM 42 C C2 SQD . . . X 16 -30.606 97.499 19.873 1 45.4 ? C2 SQD 201 D 1 HETATM 43 O O2 SQD . . . X 16 -29.73 97.531 21.034 1 60.62 ? O2 SQD 201 D 1 HETATM 44 C C3 SQD . . . X 16 -29.788 97.595 18.587 1 49.74 ? C3 SQD 201 D 1 HETATM 45 O O3 SQD . . . X 16 -28.354 97.626 18.785 1 39.61 ? O3 SQD 201 D 1 HETATM 46 C C4 SQD . . . X 16 -29.575 99.016 18.362 1 77.88 ? C4 SQD 201 D 1 HETATM 47 O O4 SQD . . . X 16 -28.564 99.945 17.953 1 86.49 ? O4 SQD 201 D 1 HETATM 48 C C5 SQD . . . X 16 -30.898 99.65 18.07 1 68.05 ? C5 SQD 201 D 1 HETATM 49 C C6 SQD . . . X 16 -30.71 100.852 17.48 1 53.77 ? C6 SQD 201 D 1 HETATM 50 O O5 SQD . . . X 16 -32.118 98.918 18.457 1 47.38 ? O5 SQD 201 D 1 HETATM 51 S S SQD . . . X 16 -31.597 102.036 16.908 1 68.87 ? S SQD 201 D 1 HETATM 52 O O7 SQD . . . X 16 -32.796 101.743 16.048 1 52.49 ? O7 SQD 201 D 1 HETATM 53 O O8 SQD . . . X 16 -30.557 102.749 16.151 1 79.88 ? O8 SQD 201 D 1 HETATM 54 O O9 SQD . . . X 16 -32.017 103.056 17.898 1 61.15 ? O9 SQD 201 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 54 #