data_2E75 # _model_server_result.job_id P4aNmoSAxRUEVpSpQySMKA _model_server_result.datetime_utc '2024-11-22 05:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 2E75 # _exptl.entry_id 2E75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E75 _cell.length_a 159.164 _cell.length_b 159.164 _cell.length_c 362.269 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.582 137.840067 60.378167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N ? 10 L N N ? 10 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? metalc ? metalc5 U FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 U FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale2 U CBC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? covale ? covale3 A OD1 ASP 20 A ASP 20 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale4 A NZ LYS 24 A LYS 24 1_555 N O3 UMQ . A UMQ 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE1 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc15 I CD CD . A CD 216 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc16 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc17 L FE HEM . A HEM 303 1_555 Q OH QNO . A QNO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc18 R CD CD . B CD 161 1_555 C NZ LYS 146 C LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc19 R CD CD . B CD 161 1_555 G OE2 GLU 3 G GLU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc20 R CD CD . B CD 161 1_555 B OD1 ASP 58 B ASP 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc21 S MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 W FE1 FES . D FES 200 1_555 D OG SER 131 D SER 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 2E75 _atom_sites.fract_transf_matrix[1][1] 0.006283 _atom_sites.fract_transf_matrix[1][2] 0.003627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1102 1102 UMQ UMQ . O 12 UMQ A 1 1103 1103 UMQ UMQ . P 12 UMQ A 1 1104 1104 UMQ UMQ . Q 13 QNO A 1 501 501 QNO QNO . R 9 CD B 1 161 4 CD CD . S 14 CLA B 1 201 201 CLA CLA . T 11 OPC B 1 1001 1001 OPC OPC . U 10 HEM C 1 301 301 HEM HEM . V 12 UMQ C 1 1101 1101 UMQ UMQ . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 2 HOH HOH . Z 18 HOH A 2 1106 3 HOH HOH . Z 18 HOH A 3 1107 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 10 -26.476 73.493 12.702 1 2 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . K 10 -30.933 73.261 14.453 1 3.13 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . K 10 -30.934 68.611 13.31 1 3.46 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . K 10 -26.666 68.829 12.052 1 2 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . K 10 -27.718 73.774 13.157 1 10.4 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . K 10 -28.146 75.133 13.463 1 43.9 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . K 10 -29.388 75.083 13.962 1 36.7 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . K 10 -29.76 73.7 14.019 1 7.19 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . K 10 -30.206 76.31 14.386 1 2.15 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . K 10 -27.333 76.417 13.122 1 15.67 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . K 10 -27.185 76.228 11.548 1 18.01 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . K 10 -28.326 76.356 10.474 1 40.97 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . K 10 -28.302 75.75 9.298 1 39.02 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . K 10 -29.302 77.125 10.765 1 47.86 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . K 10 -31.296 71.931 14.288 1 13.37 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . K 10 -32.577 71.27 14.674 1 15.4 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . K 10 -32.49 69.986 14.373 1 11.86 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . K 10 -31.22 69.814 13.771 1 2 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . K 10 -33.836 71.908 15.334 1 4.8 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . K 10 -33.499 68.808 14.531 1 16.19 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . K 10 -34.583 68.853 15.28 1 14.12 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . K 10 -29.839 68.234 12.713 1 2 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . K 10 -29.591 66.958 12.044 1 2 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . K 10 -28.319 67.17 11.731 1 3.36 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . K 10 -27.875 68.444 12.176 1 2 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . K 10 -30.474 65.708 11.731 1 2 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . K 10 -27.382 66.248 10.954 1 2 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . K 10 -27.876 65.049 10.831 1 3.65 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . K 10 -26.182 70.038 12.194 1 7.48 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . K 10 -24.786 70.302 11.952 1 10.51 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . K 10 -24.606 71.762 12.134 1 2 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . K 10 -25.963 72.249 12.5 1 14.42 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . K 10 -23.699 69.282 11.543 1 25.38 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . K 10 -23.229 72.308 11.892 1 2 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . K 10 -23.355 73.255 10.724 1 22.52 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . K 10 -22.043 73.981 10.5 1 49.91 ? CGD HEM 302 A 1 HETATM 37 O O1D HEM . . . K 10 -21.612 74.788 11.414 1 36.62 ? O1D HEM 302 A 1 HETATM 38 O O2D HEM . . . K 10 -21.443 73.729 9.396 1 49.92 ? O2D HEM 302 A 1 HETATM 39 N NA HEM . . . K 10 -28.722 72.913 13.538 1 8.13 ? NA HEM 302 A 1 HETATM 40 N NB HEM . . . K 10 -30.487 70.955 13.738 1 2.59 ? NB HEM 302 A 1 HETATM 41 N NC HEM . . . K 10 -28.797 69.094 12.797 1 2 ? NC HEM 302 A 1 HETATM 42 N ND HEM . . . K 10 -26.853 71.176 12.524 1 11.73 ? ND HEM 302 A 1 HETATM 43 FE FE HEM . . . K 10 -28.634 70.964 13.256 1 9.65 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #