data_2E76 # _model_server_result.job_id 0zNbL16wY4MR0cwwQkDSkg _model_server_result.datetime_utc '2024-10-14 06:16:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 2E76 # _exptl.entry_id 2E76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E76 _cell.length_a 157.227 _cell.length_b 157.227 _cell.length_c 363.295 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -78.6135 136.162576 60.549167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 J N N ? 10 K N N ? 10 L N N ? 10 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 J FE HEM . A HEM 301 1_555 A NE2 HIS 86 A HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc2 J FE HEM . A HEM 301 1_555 A NE2 HIS 187 A HIS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc3 K FE HEM . A HEM 302 1_555 A NE2 HIS 100 A HIS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 K FE HEM . A HEM 302 1_555 A NE2 HIS 202 A HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? covale ? covale1 L CAB HEM . A HEM 303 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc5 V FE HEM . C HEM 301 1_555 C N TYR 1 C TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc6 V FE HEM . C HEM 301 1_555 C NE2 HIS 26 C HIS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? covale ? covale2 V CAC HEM . C HEM 301 1_555 C SG CYS 25 C CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 W FE1 FES . D FES 200 1_555 D SG CYS 108 D CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 W FE2 FES . D FES 200 1_555 D ND1 HIS 110 D HIS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc9 W FE1 FES . D FES 200 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc10 W FE2 FES . D FES 200 1_555 D ND1 HIS 129 D HIS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? metalc ? metalc11 I CD CD . A CD 216 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc12 I CD CD . A CD 216 1_555 A OE2 GLU 75 A GLU 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc13 I CD CD . A CD 216 1_555 BA O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc14 L FE HEM . A HEM 303 1_555 Z O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc15 L FE HEM . A HEM 303 1_555 U OBD TDS . B TDS 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? metalc ? metalc16 R MG CLA . B CLA 201 1_555 AA O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 2E76 _atom_sites.fract_transf_matrix[1][1] 0.00636 _atom_sites.fract_transf_matrix[1][2] 0.003672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 CD A 1 216 1 CD CD . J 10 HEM A 1 301 301 HEM HEM . K 10 HEM A 1 302 302 HEM HEM . L 10 HEM A 1 303 303 HEM HEM . M 11 OPC A 1 1002 1002 OPC OPC . N 12 UMQ A 1 1101 1101 UMQ UMQ . O 12 UMQ A 1 1102 1102 UMQ UMQ . P 12 UMQ A 1 1103 1103 UMQ UMQ . Q 12 UMQ A 1 1104 1104 UMQ UMQ . R 13 CLA B 1 201 201 CLA CLA . S 11 OPC B 1 1001 1001 OPC OPC . T 14 TDS B 1 1201 1201 TDS TDS . U 14 TDS B 1 1202 1202 TDS TDS . V 10 HEM C 1 301 301 HEM HEM . W 15 FES D 1 200 200 FES FES . X 16 SQD D 1 201 11 SQD SQD . Y 17 BCR G 1 101 101 BCR BCR . Z 18 HOH A 1 1105 3 HOH HOH . Z 18 HOH A 2 1106 401 HOH HOH . AA 18 HOH B 1 211 211 HOH HOH . AA 18 HOH B 2 212 212 HOH HOH . BA 18 HOH C 1 302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . L 10 -24.978 78.872 15.194 1 67.72 ? CHA HEM 303 A 1 HETATM 2 C CHB HEM . . . L 10 -25.808 81.168 11.03 1 47.58 ? CHB HEM 303 A 1 HETATM 3 C CHC HEM . . . L 10 -30.489 81.088 11.519 1 54.53 ? CHC HEM 303 A 1 HETATM 4 C CHD HEM . . . L 10 -29.687 79.297 15.812 1 53.44 ? CHD HEM 303 A 1 HETATM 5 C C1A HEM . . . L 10 -24.809 79.465 13.952 1 87.7 ? C1A HEM 303 A 1 HETATM 6 C C2A HEM . . . L 10 -23.526 79.671 13.266 1 73.15 ? C2A HEM 303 A 1 HETATM 7 C C3A HEM . . . L 10 -23.767 80.321 12.158 1 55.02 ? C3A HEM 303 A 1 HETATM 8 C C4A HEM . . . L 10 -25.199 80.527 12.053 1 50.47 ? C4A HEM 303 A 1 HETATM 9 C CMA HEM . . . L 10 -22.663 80.727 11.19 1 54.21 ? CMA HEM 303 A 1 HETATM 10 C CAA HEM . . . L 10 -22.103 79.361 13.762 1 53.17 ? CAA HEM 303 A 1 HETATM 11 C CBA HEM . . . L 10 -21.888 80.552 14.748 1 49.51 ? CBA HEM 303 A 1 HETATM 12 C CGA HEM . . . L 10 -20.501 80.89 15.301 1 73.73 ? CGA HEM 303 A 1 HETATM 13 O O1A HEM . . . L 10 -19.485 80.736 14.451 1 33.01 ? O1A HEM 303 A 1 HETATM 14 O O2A HEM . . . L 10 -20.49 81.314 16.574 1 56.53 ? O2A HEM 303 A 1 HETATM 15 C C1B HEM . . . L 10 -27.134 81.361 10.804 1 41.11 ? C1B HEM 303 A 1 HETATM 16 C C2B HEM . . . L 10 -27.754 82.006 9.653 1 36.23 ? C2B HEM 303 A 1 HETATM 17 C C3B HEM . . . L 10 -29.006 81.964 9.816 1 30.18 ? C3B HEM 303 A 1 HETATM 18 C C4B HEM . . . L 10 -29.247 81.317 11.045 1 48.38 ? C4B HEM 303 A 1 HETATM 19 C CMB HEM . . . L 10 -27.172 82.64 8.394 1 31.62 ? CMB HEM 303 A 1 HETATM 20 C CAB HEM . . . L 10 -30.029 82.483 8.824 1 32.81 ? CAB HEM 303 A 1 HETATM 21 C CBB HEM . . . L 10 -29.758 83.577 8.18 1 21.71 ? CBB HEM 303 A 1 HETATM 22 C C1C HEM . . . L 10 -30.67 80.712 12.804 1 54.95 ? C1C HEM 303 A 1 HETATM 23 C C2C HEM . . . L 10 -31.897 80.89 13.537 1 38.97 ? C2C HEM 303 A 1 HETATM 24 C C3C HEM . . . L 10 -31.691 80.437 14.717 1 42.7 ? C3C HEM 303 A 1 HETATM 25 C C4C HEM . . . L 10 -30.316 79.9 14.759 1 36.29 ? C4C HEM 303 A 1 HETATM 26 C CMC HEM . . . L 10 -33.232 81.486 13.108 1 41.35 ? CMC HEM 303 A 1 HETATM 27 C CAC HEM . . . L 10 -32.818 80.478 15.747 1 37.35 ? CAC HEM 303 A 1 HETATM 28 C CBC HEM . . . L 10 -32.947 79.286 16.335 1 29.96 ? CBC HEM 303 A 1 HETATM 29 C C1D HEM . . . L 10 -28.381 78.972 16.02 1 45.68 ? C1D HEM 303 A 1 HETATM 30 C C2D HEM . . . L 10 -27.975 78.268 17.191 1 38.3 ? C2D HEM 303 A 1 HETATM 31 C C3D HEM . . . L 10 -26.472 78.109 17.086 1 59.6 ? C3D HEM 303 A 1 HETATM 32 C C4D HEM . . . L 10 -26.175 78.751 15.811 1 55.01 ? C4D HEM 303 A 1 HETATM 33 C CMD HEM . . . L 10 -28.872 77.748 18.329 1 37.23 ? CMD HEM 303 A 1 HETATM 34 C CAD HEM . . . L 10 -25.621 77.422 18.219 1 43.32 ? CAD HEM 303 A 1 HETATM 35 C CBD HEM . . . L 10 -24.128 77.777 18.211 1 67.11 ? CBD HEM 303 A 1 HETATM 36 C CGD HEM . . . L 10 -23.702 79.128 18.711 1 50.75 ? CGD HEM 303 A 1 HETATM 37 O O1D HEM . . . L 10 -22.495 79.566 18.536 1 56.92 ? O1D HEM 303 A 1 HETATM 38 O O2D HEM . . . L 10 -24.625 79.742 19.269 1 64.45 ? O2D HEM 303 A 1 HETATM 39 N NA HEM . . . L 10 -25.827 79.986 13.152 1 64.71 ? NA HEM 303 A 1 HETATM 40 N NB HEM . . . L 10 -28.083 80.962 11.662 1 48.06 ? NB HEM 303 A 1 HETATM 41 N NC HEM . . . L 10 -29.694 80.103 13.572 1 44.02 ? NC HEM 303 A 1 HETATM 42 N ND HEM . . . L 10 -27.311 79.244 15.212 1 48.54 ? ND HEM 303 A 1 HETATM 43 FE FE HEM . . . L 10 -27.616 80.578 13.611 1 49.08 ? FE HEM 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #