data_2E7D # _model_server_result.job_id kQWEATWDDcJHSbyPmZun0A _model_server_result.datetime_utc '2025-07-01 11:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3148}' # _entry.id 2E7D # _exptl.entry_id 2E7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E7D _cell.length_a 124.247 _cell.length_b 124.247 _cell.length_c 119.655 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2,3,4,5,6 A,B,C,D,E,F,G,H,I,J 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 124.247 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 62.1235 107.601058 0 4 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 62.1235 -35.867019 79.77 5 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 71.734039 79.77 6 'crystal symmetry operation' 18_655 -x+4/3,-x+y+2/3,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 124.247 71.734039 79.77 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 122 n n C1 C2 GOL sing 123 n n C1 H11 GOL sing 124 n n C1 H12 GOL sing 125 n n O1 HO1 GOL sing 126 n n C2 O2 GOL sing 127 n n C2 C3 GOL sing 128 n n C2 H2 GOL sing 129 n n O2 HO2 GOL sing 130 n n C3 O3 GOL sing 131 n n C3 H31 GOL sing 132 n n C3 H32 GOL sing 133 n n O3 HO3 GOL sing 134 n n # _atom_sites.entry_id 2E7D _atom_sites.fract_transf_matrix[1][1] 0.008048 _atom_sites.fract_transf_matrix[1][2] 0.004647 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 5610 5610 SO4 SO4 . D 2 SO4 A 1 5612 5612 SO4 SO4 . E 3 ACT A 1 1019 1019 ACT ACT . F 4 GOL A 1 3147 3147 GOL GOL . G 2 SO4 B 1 5611 5611 SO4 SO4 . H 4 GOL B 1 3148 3148 GOL GOL . I 5 HOH A 1 5613 1 HOH WAT . I 5 HOH A 2 5614 2 HOH WAT . I 5 HOH A 3 5615 3 HOH WAT . I 5 HOH A 4 5616 4 HOH WAT . I 5 HOH A 5 5617 5 HOH WAT . I 5 HOH A 6 5618 6 HOH WAT . I 5 HOH A 7 5619 7 HOH WAT . I 5 HOH A 8 5620 8 HOH WAT . I 5 HOH A 9 5621 9 HOH WAT . I 5 HOH A 10 5622 10 HOH WAT . I 5 HOH A 11 5623 11 HOH WAT . I 5 HOH A 12 5624 12 HOH WAT . I 5 HOH A 13 5625 13 HOH WAT . I 5 HOH A 14 5626 14 HOH WAT . I 5 HOH A 15 5627 15 HOH WAT . I 5 HOH A 16 5628 16 HOH WAT . I 5 HOH A 17 5629 17 HOH WAT . I 5 HOH A 18 5630 18 HOH WAT . I 5 HOH A 19 5631 19 HOH WAT . I 5 HOH A 20 5632 20 HOH WAT . I 5 HOH A 21 5633 21 HOH WAT . I 5 HOH A 22 5634 23 HOH WAT . I 5 HOH A 23 5635 25 HOH WAT . I 5 HOH A 24 5636 26 HOH WAT . I 5 HOH A 25 5637 27 HOH WAT . I 5 HOH A 26 5638 29 HOH WAT . I 5 HOH A 27 5639 30 HOH WAT . I 5 HOH A 28 5640 32 HOH WAT . I 5 HOH A 29 5641 37 HOH WAT . I 5 HOH A 30 5642 40 HOH WAT . I 5 HOH A 31 5643 42 HOH WAT . I 5 HOH A 32 5644 44 HOH WAT . I 5 HOH A 33 5645 47 HOH WAT . I 5 HOH A 34 5646 48 HOH WAT . I 5 HOH A 35 5647 51 HOH WAT . I 5 HOH A 36 5648 53 HOH WAT . I 5 HOH A 37 5649 57 HOH WAT . I 5 HOH A 38 5650 58 HOH WAT . I 5 HOH A 39 5651 59 HOH WAT . I 5 HOH A 40 5652 60 HOH WAT . I 5 HOH A 41 5653 64 HOH WAT . I 5 HOH A 42 5654 67 HOH WAT . I 5 HOH A 43 5655 68 HOH WAT . I 5 HOH A 44 5656 72 HOH WAT . I 5 HOH A 45 5657 73 HOH WAT . I 5 HOH A 46 5658 74 HOH WAT . I 5 HOH A 47 5659 76 HOH WAT . I 5 HOH A 48 5660 77 HOH WAT . I 5 HOH A 49 5661 79 HOH WAT . I 5 HOH A 50 5662 81 HOH WAT . I 5 HOH A 51 5663 82 HOH WAT . I 5 HOH A 52 5664 84 HOH WAT . I 5 HOH A 53 5665 85 HOH WAT . I 5 HOH A 54 5666 87 HOH WAT . J 5 HOH B 1 5612 22 HOH WAT . J 5 HOH B 2 5613 24 HOH WAT . J 5 HOH B 3 5614 28 HOH WAT . J 5 HOH B 4 5615 31 HOH WAT . J 5 HOH B 5 5616 33 HOH WAT . J 5 HOH B 6 5617 34 HOH WAT . J 5 HOH B 7 5618 35 HOH WAT . J 5 HOH B 8 5619 36 HOH WAT . J 5 HOH B 9 5620 38 HOH WAT . J 5 HOH B 10 5621 39 HOH WAT . J 5 HOH B 11 5622 41 HOH WAT . J 5 HOH B 12 5623 43 HOH WAT . J 5 HOH B 13 5624 45 HOH WAT . J 5 HOH B 14 5625 46 HOH WAT . J 5 HOH B 15 5626 49 HOH WAT . J 5 HOH B 16 5627 50 HOH WAT . J 5 HOH B 17 5628 52 HOH WAT . J 5 HOH B 18 5629 54 HOH WAT . J 5 HOH B 19 5630 55 HOH WAT . J 5 HOH B 20 5631 56 HOH WAT . J 5 HOH B 21 5632 61 HOH WAT . J 5 HOH B 22 5633 62 HOH WAT . J 5 HOH B 23 5634 63 HOH WAT . J 5 HOH B 24 5635 65 HOH WAT . J 5 HOH B 25 5636 66 HOH WAT . J 5 HOH B 26 5637 69 HOH WAT . J 5 HOH B 27 5638 70 HOH WAT . J 5 HOH B 28 5639 71 HOH WAT . J 5 HOH B 29 5640 75 HOH WAT . J 5 HOH B 30 5641 78 HOH WAT . J 5 HOH B 31 5642 80 HOH WAT . J 5 HOH B 32 5643 83 HOH WAT . J 5 HOH B 33 5644 86 HOH WAT . J 5 HOH B 34 5645 88 HOH WAT . J 5 HOH B 35 5646 89 HOH WAT . J 5 HOH B 36 5647 90 HOH WAT . J 5 HOH B 37 5648 91 HOH WAT . J 5 HOH B 38 5649 92 HOH WAT . J 5 HOH B 39 5650 93 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 30.742 26.85 68.414 1 66.38 ? C1 GOL 3148 B 1 HETATM 2 O O1 GOL . . . H 4 31.588 26.226 69.384 1 65.6 ? O1 GOL 3148 B 1 HETATM 3 C C2 GOL . . . H 4 29.842 27.871 69.11 1 65.79 ? C2 GOL 3148 B 1 HETATM 4 O O2 GOL . . . H 4 30.641 28.938 69.623 1 66.54 ? O2 GOL 3148 B 1 HETATM 5 C C3 GOL . . . H 4 28.816 28.42 68.119 1 65.9 ? C3 GOL 3148 B 1 HETATM 6 O O3 GOL . . . H 4 28.125 29.529 68.706 1 65.82 ? O3 GOL 3148 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #