data_2E7I # _model_server_result.job_id gTkVQeQ6m1zwAAbBZg-A_A _model_server_result.datetime_utc '2024-11-29 13:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1209}' # _entry.id 2E7I # _exptl.entry_id 2E7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E7I _cell.length_a 220.663 _cell.length_b 220.663 _cell.length_c 92.929 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1,2 B,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -46.4645 3 'crystal symmetry operation' 8_435 x-y-1,-y-2,-z 1 0 0 0 -1 0 0 0 -1 0 -382.199527 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 209 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 1209 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.47 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2E7I _atom_sites.fract_transf_matrix[1][1] 0.004532 _atom_sites.fract_transf_matrix[1][2] 0.002616 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 602 602 SO4 SO4 . D 2 SO4 A 1 604 604 SO4 SO4 . E 2 SO4 A 1 605 605 SO4 SO4 . F 3 PLP A 1 1209 209 PLP LLP . G 2 SO4 B 1 601 601 SO4 SO4 . H 2 SO4 B 1 603 603 SO4 SO4 . I 4 HOH A 1 1210 2 HOH TIP . I 4 HOH A 2 1211 3 HOH TIP . I 4 HOH A 3 1212 4 HOH TIP . I 4 HOH A 4 1213 5 HOH TIP . I 4 HOH A 5 1214 6 HOH TIP . I 4 HOH A 6 1215 8 HOH TIP . I 4 HOH A 7 1216 9 HOH TIP . I 4 HOH A 8 1217 10 HOH TIP . I 4 HOH A 9 1218 11 HOH TIP . I 4 HOH A 10 1219 12 HOH TIP . I 4 HOH A 11 1220 13 HOH TIP . I 4 HOH A 12 1221 14 HOH TIP . I 4 HOH A 13 1222 15 HOH TIP . I 4 HOH A 14 1223 16 HOH TIP . I 4 HOH A 15 1224 20 HOH TIP . I 4 HOH A 16 1225 21 HOH TIP . I 4 HOH A 17 1226 22 HOH TIP . I 4 HOH A 18 1227 23 HOH TIP . I 4 HOH A 19 1228 24 HOH TIP . I 4 HOH A 20 1229 25 HOH TIP . I 4 HOH A 21 1230 27 HOH TIP . I 4 HOH A 22 1231 28 HOH TIP . I 4 HOH A 23 1232 30 HOH TIP . I 4 HOH A 24 1233 32 HOH TIP . I 4 HOH A 25 1234 34 HOH TIP . I 4 HOH A 26 1235 35 HOH TIP . I 4 HOH A 27 1236 36 HOH TIP . I 4 HOH A 28 1237 37 HOH TIP . I 4 HOH A 29 1238 38 HOH TIP . I 4 HOH A 30 1239 39 HOH TIP . I 4 HOH A 31 1240 41 HOH TIP . I 4 HOH A 32 1241 42 HOH TIP . I 4 HOH A 33 1242 43 HOH TIP . I 4 HOH A 34 1243 44 HOH TIP . I 4 HOH A 35 1244 46 HOH TIP . I 4 HOH A 36 1245 48 HOH TIP . I 4 HOH A 37 1246 50 HOH TIP . I 4 HOH A 38 1247 51 HOH TIP . I 4 HOH A 39 1248 52 HOH TIP . I 4 HOH A 40 1249 53 HOH TIP . I 4 HOH A 41 1250 54 HOH TIP . I 4 HOH A 42 1251 55 HOH TIP . I 4 HOH A 43 1252 57 HOH TIP . I 4 HOH A 44 1253 58 HOH TIP . I 4 HOH A 45 1254 59 HOH TIP . I 4 HOH A 46 1255 60 HOH TIP . I 4 HOH A 47 1256 61 HOH TIP . I 4 HOH A 48 1257 62 HOH TIP . I 4 HOH A 49 1258 63 HOH TIP . I 4 HOH A 50 1259 64 HOH TIP . I 4 HOH A 51 1260 65 HOH TIP . I 4 HOH A 52 1261 67 HOH TIP . I 4 HOH A 53 1262 68 HOH TIP . I 4 HOH A 54 1263 69 HOH TIP . J 4 HOH B 1 604 1 HOH TIP . J 4 HOH B 2 605 7 HOH TIP . J 4 HOH B 3 606 17 HOH TIP . J 4 HOH B 4 607 18 HOH TIP . J 4 HOH B 5 608 19 HOH TIP . J 4 HOH B 6 609 26 HOH TIP . J 4 HOH B 7 610 29 HOH TIP . J 4 HOH B 8 611 31 HOH TIP . J 4 HOH B 9 612 33 HOH TIP . J 4 HOH B 10 613 40 HOH TIP . J 4 HOH B 11 614 45 HOH TIP . J 4 HOH B 12 615 47 HOH TIP . J 4 HOH B 13 616 49 HOH TIP . J 4 HOH B 14 617 56 HOH TIP . J 4 HOH B 15 618 66 HOH TIP . J 4 HOH B 16 619 70 HOH TIP . J 4 HOH B 17 620 71 HOH TIP . J 4 HOH B 18 621 72 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . F 3 -11.79 -144.018 -14.43 1 76.8 ? N1 PLP 1209 A 1 HETATM 2 C C2 PLP . . . F 3 -12.266 -144.872 -13.514 1 65.31 ? C2 PLP 1209 A 1 HETATM 3 C C2A PLP . . . F 3 -13.627 -144.623 -12.862 1 56.79 ? C2A PLP 1209 A 1 HETATM 4 C C3 PLP . . . F 3 -11.519 -145.988 -13.152 1 69.85 ? C3 PLP 1209 A 1 HETATM 5 O O3 PLP . . . F 3 -11.996 -146.833 -12.198 1 61.23 ? O3 PLP 1209 A 1 HETATM 6 C C4 PLP . . . F 3 -10.28 -146.229 -13.733 1 73.19 ? C4 PLP 1209 A 1 HETATM 7 C C4A PLP . . . F 3 -9.459 -147.459 -13.337 1 67.52 ? C4A PLP 1209 A 1 HETATM 8 C C5 PLP . . . F 3 -9.823 -145.313 -14.677 1 71.99 ? C5 PLP 1209 A 1 HETATM 9 C C6 PLP . . . F 3 -10.615 -144.216 -14.999 1 69.64 ? C6 PLP 1209 A 1 HETATM 10 C C5A PLP . . . F 3 -8.462 -145.409 -15.372 1 66.8 ? C5A PLP 1209 A 1 HETATM 11 O O4P PLP . . . F 3 -8.424 -146.471 -16.328 1 59.29 ? O4P PLP 1209 A 1 HETATM 12 P P PLP . . . F 3 -7.172 -146.606 -17.33 1 48.86 ? P PLP 1209 A 1 HETATM 13 O O1P PLP . . . F 3 -7.536 -147.259 -18.606 1 42.92 ? O1P PLP 1209 A 1 HETATM 14 O O2P PLP . . . F 3 -6.021 -147.393 -16.528 1 45.57 ? O2P PLP 1209 A 1 HETATM 15 O O3P PLP . . . F 3 -6.617 -145.112 -17.545 1 58.06 ? O3P PLP 1209 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #