data_2E7J # _model_server_result.job_id mKkDCmykS2jXYB0K-YkoMQ _model_server_result.datetime_utc '2024-11-05 00:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1209}' # _entry.id 2E7J # _exptl.entry_id 2E7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E7J _cell.length_a 152.174 _cell.length_b 152.174 _cell.length_c 92.531 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 209 A LYS 209 1_555 E C4A PLP . A PLP 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale2 B NZ LYS 209 B LYS 209 1_555 H C4A PLP . B PLP 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 2E7J _atom_sites.fract_transf_matrix[1][1] 0.006571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 601 SO4 SO4 . D 2 SO4 A 1 602 602 SO4 SO4 . E 3 PLP A 1 1209 209 PLP LLP . F 2 SO4 B 1 701 701 SO4 SO4 . G 2 SO4 B 1 702 702 SO4 SO4 . H 3 PLP B 1 1209 209 PLP LLP . I 4 HOH A 1 1210 1 HOH TIP . I 4 HOH A 2 1211 4 HOH TIP . I 4 HOH A 3 1212 5 HOH TIP . I 4 HOH A 4 1213 8 HOH TIP . I 4 HOH A 5 1214 13 HOH TIP . I 4 HOH A 6 1215 19 HOH TIP . I 4 HOH A 7 1216 23 HOH TIP . I 4 HOH A 8 1217 24 HOH TIP . I 4 HOH A 9 1218 26 HOH TIP . I 4 HOH A 10 1219 33 HOH TIP . I 4 HOH A 11 1220 37 HOH TIP . I 4 HOH A 12 1221 38 HOH TIP . I 4 HOH A 13 1222 39 HOH TIP . I 4 HOH A 14 1223 40 HOH TIP . I 4 HOH A 15 1224 41 HOH TIP . I 4 HOH A 16 1225 42 HOH TIP . I 4 HOH A 17 1226 46 HOH TIP . I 4 HOH A 18 1227 48 HOH TIP . I 4 HOH A 19 1228 49 HOH TIP . I 4 HOH A 20 1229 50 HOH TIP . I 4 HOH A 21 1230 51 HOH TIP . I 4 HOH A 22 1231 52 HOH TIP . I 4 HOH A 23 1232 53 HOH TIP . I 4 HOH A 24 1233 57 HOH TIP . I 4 HOH A 25 1234 62 HOH TIP . I 4 HOH A 26 1235 63 HOH TIP . I 4 HOH A 27 1236 71 HOH TIP . I 4 HOH A 28 1237 73 HOH TIP . I 4 HOH A 29 1238 78 HOH TIP . I 4 HOH A 30 1239 81 HOH TIP . J 4 HOH B 1 1210 2 HOH TIP . J 4 HOH B 2 1211 3 HOH TIP . J 4 HOH B 3 1212 6 HOH TIP . J 4 HOH B 4 1213 7 HOH TIP . J 4 HOH B 5 1214 9 HOH TIP . J 4 HOH B 6 1215 10 HOH TIP . J 4 HOH B 7 1216 11 HOH TIP . J 4 HOH B 8 1217 12 HOH TIP . J 4 HOH B 9 1218 14 HOH TIP . J 4 HOH B 10 1219 15 HOH TIP . J 4 HOH B 11 1220 16 HOH TIP . J 4 HOH B 12 1221 17 HOH TIP . J 4 HOH B 13 1222 18 HOH TIP . J 4 HOH B 14 1223 20 HOH TIP . J 4 HOH B 15 1224 21 HOH TIP . J 4 HOH B 16 1225 22 HOH TIP . J 4 HOH B 17 1226 25 HOH TIP . J 4 HOH B 18 1227 27 HOH TIP . J 4 HOH B 19 1228 28 HOH TIP . J 4 HOH B 20 1229 29 HOH TIP . J 4 HOH B 21 1230 30 HOH TIP . J 4 HOH B 22 1231 31 HOH TIP . J 4 HOH B 23 1232 32 HOH TIP . J 4 HOH B 24 1233 34 HOH TIP . J 4 HOH B 25 1234 35 HOH TIP . J 4 HOH B 26 1235 36 HOH TIP . J 4 HOH B 27 1236 43 HOH TIP . J 4 HOH B 28 1237 44 HOH TIP . J 4 HOH B 29 1238 45 HOH TIP . J 4 HOH B 30 1239 47 HOH TIP . J 4 HOH B 31 1240 54 HOH TIP . J 4 HOH B 32 1241 55 HOH TIP . J 4 HOH B 33 1242 56 HOH TIP . J 4 HOH B 34 1243 58 HOH TIP . J 4 HOH B 35 1244 59 HOH TIP . J 4 HOH B 36 1245 60 HOH TIP . J 4 HOH B 37 1246 61 HOH TIP . J 4 HOH B 38 1247 64 HOH TIP . J 4 HOH B 39 1248 65 HOH TIP . J 4 HOH B 40 1249 66 HOH TIP . J 4 HOH B 41 1250 67 HOH TIP . J 4 HOH B 42 1251 68 HOH TIP . J 4 HOH B 43 1252 69 HOH TIP . J 4 HOH B 44 1253 70 HOH TIP . J 4 HOH B 45 1254 72 HOH TIP . J 4 HOH B 46 1255 74 HOH TIP . J 4 HOH B 47 1256 75 HOH TIP . J 4 HOH B 48 1257 76 HOH TIP . J 4 HOH B 49 1258 77 HOH TIP . J 4 HOH B 50 1259 79 HOH TIP . J 4 HOH B 51 1260 80 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . H 3 -19.541 -31.029 -22.226 1 96.5 ? N1 PLP 1209 B 1 HETATM 2 C C2 PLP . . . H 3 -19.633 -31.898 -21.21 1 99.77 ? C2 PLP 1209 B 1 HETATM 3 C C2A PLP . . . H 3 -20.857 -31.869 -20.292 1 90.12 ? C2A PLP 1209 B 1 HETATM 4 C C3 PLP . . . H 3 -18.613 -32.819 -20.989 1 98.96 ? C3 PLP 1209 B 1 HETATM 5 O O3 PLP . . . H 3 -18.706 -33.677 -19.936 1 98.66 ? O3 PLP 1209 B 1 HETATM 6 C C4 PLP . . . H 3 -17.494 -32.849 -21.815 1 93.89 ? C4 PLP 1209 B 1 HETATM 7 C C4A PLP . . . H 3 -16.35 -33.842 -21.58 1 82.15 ? C4A PLP 1209 B 1 HETATM 8 C C5 PLP . . . H 3 -17.441 -31.925 -22.855 1 84.26 ? C5 PLP 1209 B 1 HETATM 9 C C6 PLP . . . H 3 -18.492 -31.029 -23.027 1 90.52 ? C6 PLP 1209 B 1 HETATM 10 C C5A PLP . . . H 3 -16.263 -31.791 -23.823 1 72.42 ? C5A PLP 1209 B 1 HETATM 11 O O4P PLP . . . H 3 -15.729 -33.059 -24.219 1 45.5 ? O4P PLP 1209 B 1 HETATM 12 P P PLP . . . H 3 -14.574 -33.102 -25.338 1 48.9 ? P PLP 1209 B 1 HETATM 13 O O1P PLP . . . H 3 -14.965 -33.937 -26.497 1 54.84 ? O1P PLP 1209 B 1 HETATM 14 O O2P PLP . . . H 3 -13.221 -33.592 -24.618 1 55.88 ? O2P PLP 1209 B 1 HETATM 15 O O3P PLP . . . H 3 -14.274 -31.572 -25.741 1 48.45 ? O3P PLP 1209 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #