data_2E9D # _model_server_result.job_id LREM5omZsqtwih0NSrdg2g _model_server_result.datetime_utc '2024-11-02 21:37:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 2E9D # _exptl.entry_id 2E9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[1-HYDROXY-2-(1,1':3',1''-TERPHENYL-3-YLOXY)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E9D _cell.length_a 62.973 _cell.length_b 68.29 _cell.length_c 110.234 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C20 H20 O8 P2' _chem_comp.formula_weight 450.316 _chem_comp.id B76 _chem_comp.mon_nstd_flag . _chem_comp.name "[1-HYDROXY-2-(1,1':3',1''-TERPHENYL-3-YLOXY)ETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAI B76 doub 70 n y CAN CAX B76 sing 71 n y CAN HAN B76 sing 72 n n CAI CAH B76 sing 73 n y CAI HAI B76 sing 74 n n CAH CAJ B76 doub 75 n y CAH HAH B76 sing 76 n n CAJ CAO B76 sing 77 n y CAJ HAJ B76 sing 78 n n CAO CAX B76 doub 79 n y CAO HAO B76 sing 80 n n CAX CAZ B76 sing 81 n y CAZ CAT B76 doub 82 n y CAZ CAQ B76 sing 83 n y CAT CBA B76 sing 84 n y CAT HAT B76 sing 85 n n CAQ CAL B76 doub 86 n y CAQ HAQ B76 sing 87 n n CAL CAR B76 sing 88 n y CAL HAL B76 sing 89 n n CAR CBA B76 doub 90 n y CAR HAR B76 sing 91 n n CBA CAY B76 sing 92 n y CAY CAP B76 sing 93 n y CAY CAS B76 doub 94 n y CAS CAW B76 sing 95 n y CAS HAS B76 sing 96 n n CAP CAK B76 doub 97 n y CAP HAP B76 sing 98 n n CAK CAM B76 sing 99 n y CAK HAK B76 sing 100 n n CAM CAW B76 doub 101 n y CAM HAM B76 sing 102 n n CAW OAV B76 sing 103 n n OAV CAU B76 sing 104 n n CAU CBB B76 sing 105 n n CAU HAU1 B76 sing 106 n n CAU HAU2 B76 sing 107 n n CBB PBC B76 sing 108 n n CBB OAC B76 sing 109 n n CBB PBD B76 sing 110 n n PBC OAE B76 doub 111 n n PBC OAA B76 sing 112 n n PBC OAD B76 sing 113 n n OAD HOAD B76 sing 114 n n OAA HOAA B76 sing 115 n n PBD OAG B76 doub 116 n n PBD OAB B76 sing 117 n n PBD OAF B76 sing 118 n n OAF HOAF B76 sing 119 n n OAB HOAB B76 sing 120 n n OAC HOAC B76 sing 121 n n # _atom_sites.entry_id 2E9D _atom_sites.fract_transf_matrix[1][1] 0.01588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B76 A 1 701 701 B76 DRG . D 2 B76 A 1 702 702 B76 DRG . E 2 B76 B 1 703 703 B76 DRG . F 3 HOH A 1 302 302 HOH WAT . F 3 HOH A 2 303 303 HOH WAT . F 3 HOH A 3 304 304 HOH WAT . F 3 HOH A 4 305 305 HOH WAT . F 3 HOH A 5 307 307 HOH WAT . F 3 HOH A 6 309 309 HOH WAT . F 3 HOH A 7 311 311 HOH WAT . F 3 HOH A 8 319 319 HOH WAT . F 3 HOH A 9 321 321 HOH WAT . F 3 HOH A 10 324 324 HOH WAT . F 3 HOH A 11 326 326 HOH WAT . F 3 HOH A 12 328 328 HOH WAT . F 3 HOH A 13 329 329 HOH WAT . F 3 HOH A 14 330 330 HOH WAT . F 3 HOH A 15 331 331 HOH WAT . F 3 HOH A 16 332 332 HOH WAT . F 3 HOH A 17 334 334 HOH WAT . F 3 HOH A 18 335 335 HOH WAT . F 3 HOH A 19 336 336 HOH WAT . F 3 HOH A 20 337 337 HOH WAT . F 3 HOH A 21 341 341 HOH WAT . F 3 HOH A 22 343 343 HOH WAT . F 3 HOH A 23 345 345 HOH WAT . F 3 HOH A 24 347 347 HOH WAT . F 3 HOH A 25 348 348 HOH WAT . F 3 HOH A 26 352 352 HOH WAT . F 3 HOH A 27 357 357 HOH WAT . F 3 HOH A 28 358 358 HOH WAT . F 3 HOH A 29 359 359 HOH WAT . F 3 HOH A 30 370 370 HOH WAT . F 3 HOH A 31 373 373 HOH WAT . F 3 HOH A 32 375 375 HOH WAT . F 3 HOH A 33 376 376 HOH WAT . F 3 HOH A 34 386 386 HOH WAT . F 3 HOH A 35 387 387 HOH WAT . F 3 HOH A 36 388 388 HOH WAT . F 3 HOH A 37 393 393 HOH WAT . F 3 HOH A 38 394 394 HOH WAT . F 3 HOH A 39 398 398 HOH WAT . F 3 HOH A 40 402 402 HOH WAT . F 3 HOH A 41 404 404 HOH WAT . F 3 HOH A 42 406 406 HOH WAT . F 3 HOH A 43 408 408 HOH WAT . F 3 HOH A 44 409 409 HOH WAT . F 3 HOH A 45 410 410 HOH WAT . F 3 HOH A 46 411 411 HOH WAT . F 3 HOH A 47 414 414 HOH WAT . F 3 HOH A 48 420 420 HOH WAT . F 3 HOH A 49 421 421 HOH WAT . F 3 HOH A 50 422 422 HOH WAT . F 3 HOH A 51 423 423 HOH WAT . F 3 HOH A 52 424 424 HOH WAT . F 3 HOH A 53 428 428 HOH WAT . F 3 HOH A 54 429 429 HOH WAT . F 3 HOH A 55 430 430 HOH WAT . F 3 HOH A 56 432 432 HOH WAT . F 3 HOH A 57 433 433 HOH WAT . F 3 HOH A 58 435 435 HOH WAT . F 3 HOH A 59 436 436 HOH WAT . F 3 HOH A 60 437 437 HOH WAT . F 3 HOH A 61 445 445 HOH WAT . F 3 HOH A 62 446 446 HOH WAT . F 3 HOH A 63 449 449 HOH WAT . F 3 HOH A 64 450 450 HOH WAT . F 3 HOH A 65 451 451 HOH WAT . F 3 HOH A 66 452 452 HOH WAT . F 3 HOH A 67 453 453 HOH WAT . F 3 HOH A 68 454 454 HOH WAT . F 3 HOH A 69 455 455 HOH WAT . F 3 HOH A 70 456 456 HOH WAT . F 3 HOH A 71 457 457 HOH WAT . F 3 HOH A 72 458 458 HOH WAT . F 3 HOH A 73 459 459 HOH WAT . F 3 HOH A 74 460 460 HOH WAT . F 3 HOH A 75 461 461 HOH WAT . F 3 HOH A 76 466 466 HOH WAT . F 3 HOH A 77 467 467 HOH WAT . F 3 HOH A 78 468 468 HOH WAT . F 3 HOH A 79 469 469 HOH WAT . F 3 HOH A 80 481 481 HOH WAT . F 3 HOH A 81 483 483 HOH WAT . F 3 HOH A 82 486 486 HOH WAT . F 3 HOH A 83 487 487 HOH WAT . F 3 HOH A 84 488 488 HOH WAT . F 3 HOH A 85 489 489 HOH WAT . F 3 HOH A 86 490 490 HOH WAT . F 3 HOH A 87 491 491 HOH WAT . F 3 HOH A 88 492 492 HOH WAT . F 3 HOH A 89 493 493 HOH WAT . F 3 HOH A 90 494 494 HOH WAT . F 3 HOH A 91 497 497 HOH WAT . F 3 HOH A 92 501 501 HOH WAT . F 3 HOH A 93 502 502 HOH WAT . F 3 HOH A 94 503 503 HOH WAT . F 3 HOH A 95 504 504 HOH WAT . F 3 HOH A 96 505 505 HOH WAT . F 3 HOH A 97 506 506 HOH WAT . G 3 HOH B 1 301 301 HOH WAT . G 3 HOH B 2 306 306 HOH WAT . G 3 HOH B 3 308 308 HOH WAT . G 3 HOH B 4 310 310 HOH WAT . G 3 HOH B 5 312 312 HOH WAT . G 3 HOH B 6 313 313 HOH WAT . G 3 HOH B 7 314 314 HOH WAT . G 3 HOH B 8 315 315 HOH WAT . G 3 HOH B 9 316 316 HOH WAT . G 3 HOH B 10 317 317 HOH WAT . G 3 HOH B 11 318 318 HOH WAT . G 3 HOH B 12 320 320 HOH WAT . G 3 HOH B 13 322 322 HOH WAT . G 3 HOH B 14 323 323 HOH WAT . G 3 HOH B 15 325 325 HOH WAT . G 3 HOH B 16 327 327 HOH WAT . G 3 HOH B 17 333 333 HOH WAT . G 3 HOH B 18 338 338 HOH WAT . G 3 HOH B 19 339 339 HOH WAT . G 3 HOH B 20 340 340 HOH WAT . G 3 HOH B 21 342 342 HOH WAT . G 3 HOH B 22 344 344 HOH WAT . G 3 HOH B 23 346 346 HOH WAT . G 3 HOH B 24 349 349 HOH WAT . G 3 HOH B 25 350 350 HOH WAT . G 3 HOH B 26 351 351 HOH WAT . G 3 HOH B 27 353 353 HOH WAT . G 3 HOH B 28 354 354 HOH WAT . G 3 HOH B 29 355 355 HOH WAT . G 3 HOH B 30 356 356 HOH WAT . G 3 HOH B 31 360 360 HOH WAT . G 3 HOH B 32 361 361 HOH WAT . G 3 HOH B 33 362 362 HOH WAT . G 3 HOH B 34 363 363 HOH WAT . G 3 HOH B 35 364 364 HOH WAT . G 3 HOH B 36 365 365 HOH WAT . G 3 HOH B 37 366 366 HOH WAT . G 3 HOH B 38 367 367 HOH WAT . G 3 HOH B 39 368 368 HOH WAT . G 3 HOH B 40 369 369 HOH WAT . G 3 HOH B 41 371 371 HOH WAT . G 3 HOH B 42 372 372 HOH WAT . G 3 HOH B 43 374 374 HOH WAT . G 3 HOH B 44 377 377 HOH WAT . G 3 HOH B 45 378 378 HOH WAT . G 3 HOH B 46 379 379 HOH WAT . G 3 HOH B 47 380 380 HOH WAT . G 3 HOH B 48 381 381 HOH WAT . G 3 HOH B 49 382 382 HOH WAT . G 3 HOH B 50 383 383 HOH WAT . G 3 HOH B 51 384 384 HOH WAT . G 3 HOH B 52 385 385 HOH WAT . G 3 HOH B 53 389 389 HOH WAT . G 3 HOH B 54 390 390 HOH WAT . G 3 HOH B 55 391 391 HOH WAT . G 3 HOH B 56 392 392 HOH WAT . G 3 HOH B 57 395 395 HOH WAT . G 3 HOH B 58 396 396 HOH WAT . G 3 HOH B 59 397 397 HOH WAT . G 3 HOH B 60 399 399 HOH WAT . G 3 HOH B 61 400 400 HOH WAT . G 3 HOH B 62 401 401 HOH WAT . G 3 HOH B 63 403 403 HOH WAT . G 3 HOH B 64 405 405 HOH WAT . G 3 HOH B 65 407 407 HOH WAT . G 3 HOH B 66 412 412 HOH WAT . G 3 HOH B 67 413 413 HOH WAT . G 3 HOH B 68 415 415 HOH WAT . G 3 HOH B 69 416 416 HOH WAT . G 3 HOH B 70 417 417 HOH WAT . G 3 HOH B 71 418 418 HOH WAT . G 3 HOH B 72 419 419 HOH WAT . G 3 HOH B 73 425 425 HOH WAT . G 3 HOH B 74 426 426 HOH WAT . G 3 HOH B 75 427 427 HOH WAT . G 3 HOH B 76 431 431 HOH WAT . G 3 HOH B 77 434 434 HOH WAT . G 3 HOH B 78 438 438 HOH WAT . G 3 HOH B 79 439 439 HOH WAT . G 3 HOH B 80 440 440 HOH WAT . G 3 HOH B 81 441 441 HOH WAT . G 3 HOH B 82 442 442 HOH WAT . G 3 HOH B 83 443 443 HOH WAT . G 3 HOH B 84 444 444 HOH WAT . G 3 HOH B 85 447 447 HOH WAT . G 3 HOH B 86 448 448 HOH WAT . G 3 HOH B 87 462 462 HOH WAT . G 3 HOH B 88 463 463 HOH WAT . G 3 HOH B 89 464 464 HOH WAT . G 3 HOH B 90 465 465 HOH WAT . G 3 HOH B 91 470 470 HOH WAT . G 3 HOH B 92 471 471 HOH WAT . G 3 HOH B 93 472 472 HOH WAT . G 3 HOH B 94 473 473 HOH WAT . G 3 HOH B 95 474 474 HOH WAT . G 3 HOH B 96 475 475 HOH WAT . G 3 HOH B 97 476 476 HOH WAT . G 3 HOH B 98 477 477 HOH WAT . G 3 HOH B 99 478 478 HOH WAT . G 3 HOH B 100 479 479 HOH WAT . G 3 HOH B 101 480 480 HOH WAT . G 3 HOH B 102 482 482 HOH WAT . G 3 HOH B 103 484 484 HOH WAT . G 3 HOH B 104 485 485 HOH WAT . G 3 HOH B 105 495 495 HOH WAT . G 3 HOH B 106 496 496 HOH WAT . G 3 HOH B 107 498 498 HOH WAT . G 3 HOH B 108 499 499 HOH WAT . G 3 HOH B 109 500 500 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN B76 . . . D 2 45.041 27.809 57.666 1 74.96 ? CAN B76 702 A 1 HETATM 2 C CAI B76 . . . D 2 44.825 28.73 56.647 1 74.6 ? CAI B76 702 A 1 HETATM 3 C CAH B76 . . . D 2 43.576 28.805 56.045 1 75.39 ? CAH B76 702 A 1 HETATM 4 C CAJ B76 . . . D 2 42.546 27.968 56.46 1 74.85 ? CAJ B76 702 A 1 HETATM 5 C CAO B76 . . . D 2 42.765 27.047 57.478 1 74.88 ? CAO B76 702 A 1 HETATM 6 C CAX B76 . . . D 2 44.015 26.967 58.078 1 75.56 ? CAX B76 702 A 1 HETATM 7 C CAZ B76 . . . D 2 44.228 26.057 59.108 1 76.46 ? CAZ B76 702 A 1 HETATM 8 C CAT B76 . . . D 2 43.399 24.95 59.242 1 77.31 ? CAT B76 702 A 1 HETATM 9 C CAQ B76 . . . D 2 45.241 26.276 60.032 1 77.66 ? CAQ B76 702 A 1 HETATM 10 C CAL B76 . . . D 2 45.415 25.396 61.096 1 78.8 ? CAL B76 702 A 1 HETATM 11 C CAR B76 . . . D 2 44.578 24.294 61.235 1 78.53 ? CAR B76 702 A 1 HETATM 12 C CBA B76 . . . D 2 43.572 24.07 60.305 1 78.86 ? CBA B76 702 A 1 HETATM 13 C CAY B76 . . . D 2 42.732 22.97 60.439 1 80.06 ? CAY B76 702 A 1 HETATM 14 C CAS B76 . . . D 2 42.588 22.358 61.677 1 82.36 ? CAS B76 702 A 1 HETATM 15 C CAP B76 . . . D 2 41.954 22.553 59.366 1 81 ? CAP B76 702 A 1 HETATM 16 C CAK B76 . . . D 2 41.027 21.529 59.529 1 82.08 ? CAK B76 702 A 1 HETATM 17 C CAM B76 . . . D 2 40.875 20.924 60.771 1 83.36 ? CAM B76 702 A 1 HETATM 18 C CAW B76 . . . D 2 41.651 21.343 61.846 1 84.52 ? CAW B76 702 A 1 HETATM 19 O OAV B76 . . . D 2 41.421 20.85 63.092 1 87.41 ? OAV B76 702 A 1 HETATM 20 C CAU B76 . . . D 2 40.963 19.491 63.068 1 91.13 ? CAU B76 702 A 1 HETATM 21 C CBB B76 . . . D 2 40.381 19.12 64.423 1 93.36 ? CBB B76 702 A 1 HETATM 22 P PBC B76 . . . D 2 40.089 17.279 64.482 1 94.15 ? PBC B76 702 A 1 HETATM 23 O OAD B76 . . . D 2 38.836 17.035 65.464 1 93.88 ? OAD B76 702 A 1 HETATM 24 O OAE B76 . . . D 2 39.588 16.862 63.01 1 94.17 ? OAE B76 702 A 1 HETATM 25 O OAA B76 . . . D 2 41.302 16.535 64.891 1 94.03 ? OAA B76 702 A 1 HETATM 26 P PBD B76 . . . D 2 41.528 19.653 65.798 1 95.77 ? PBD B76 702 A 1 HETATM 27 O OAF B76 . . . D 2 41.806 18.358 66.713 1 96.22 ? OAF B76 702 A 1 HETATM 28 O OAG B76 . . . D 2 42.951 20.027 65.141 1 95.9 ? OAG B76 702 A 1 HETATM 29 O OAB B76 . . . D 2 40.984 20.786 66.58 1 95.52 ? OAB B76 702 A 1 HETATM 30 O OAC B76 . . . D 2 39.128 19.792 64.582 1 93.27 ? OAC B76 702 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #