data_2E9F
#
_model_server_result.job_id            i1MwrFtxcRspAhmZSm-RZQ 
_model_server_result.datetime_utc      '2024-11-29 01:54:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2e9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":492}' 
#
_entry.id    2E9F 
#
_exptl.entry_id    2E9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2E9F 
_cell.length_a            78.336 
_cell.length_b            119.787 
_cell.length_c            257.839 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2E9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     2E9F 
_atom_sites.fract_transf_matrix[1][1]    0.012766 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008348 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ARG B 1 491 491 ARG ARG . 
F 2 ARG B 1 492 492 ARG ARG . 
G 2 ARG B 1 493 493 ARG ARG . 
H 2 ARG B 1 494 494 ARG ARG . 
I 3 HOH A 1 1002 1002 HOH HOH . 
I 3 HOH A 2 1003 1003 HOH HOH . 
I 3 HOH A 3 1016 1016 HOH HOH . 
I 3 HOH A 4 1021 1021 HOH HOH . 
I 3 HOH A 5 1022 1022 HOH HOH . 
I 3 HOH A 6 1024 1024 HOH HOH . 
I 3 HOH A 7 1025 1025 HOH HOH . 
I 3 HOH A 8 1028 1028 HOH HOH . 
I 3 HOH A 9 1037 1037 HOH HOH . 
I 3 HOH A 10 1040 1040 HOH HOH . 
I 3 HOH A 11 1044 1044 HOH HOH . 
I 3 HOH A 12 1046 1046 HOH HOH . 
I 3 HOH A 13 1047 1047 HOH HOH . 
I 3 HOH A 14 1050 1050 HOH HOH . 
I 3 HOH A 15 1057 1057 HOH HOH . 
I 3 HOH A 16 1058 1058 HOH HOH . 
I 3 HOH A 17 1060 1060 HOH HOH . 
I 3 HOH A 18 1062 1062 HOH HOH . 
I 3 HOH A 19 1068 1068 HOH HOH . 
I 3 HOH A 20 1069 1069 HOH HOH . 
I 3 HOH A 21 1073 1073 HOH HOH . 
I 3 HOH A 22 1079 1079 HOH HOH . 
I 3 HOH A 23 1083 1083 HOH HOH . 
I 3 HOH A 24 1096 1096 HOH HOH . 
I 3 HOH A 25 1098 1098 HOH HOH . 
I 3 HOH A 26 1100 1100 HOH HOH . 
I 3 HOH A 27 1102 1102 HOH HOH . 
I 3 HOH A 28 1109 1109 HOH HOH . 
I 3 HOH A 29 1120 1120 HOH HOH . 
I 3 HOH A 30 1121 1121 HOH HOH . 
I 3 HOH A 31 1123 1123 HOH HOH . 
I 3 HOH A 32 1126 1126 HOH HOH . 
I 3 HOH A 33 1131 1131 HOH HOH . 
I 3 HOH A 34 1135 1135 HOH HOH . 
J 3 HOH B 1 1004 1004 HOH HOH . 
J 3 HOH B 2 1005 1005 HOH HOH . 
J 3 HOH B 3 1008 1008 HOH HOH . 
J 3 HOH B 4 1009 1009 HOH HOH . 
J 3 HOH B 5 1010 1010 HOH HOH . 
J 3 HOH B 6 1018 1018 HOH HOH . 
J 3 HOH B 7 1019 1019 HOH HOH . 
J 3 HOH B 8 1027 1027 HOH HOH . 
J 3 HOH B 9 1031 1031 HOH HOH . 
J 3 HOH B 10 1032 1032 HOH HOH . 
J 3 HOH B 11 1033 1033 HOH HOH . 
J 3 HOH B 12 1035 1035 HOH HOH . 
J 3 HOH B 13 1036 1036 HOH HOH . 
J 3 HOH B 14 1038 1038 HOH HOH . 
J 3 HOH B 15 1042 1042 HOH HOH . 
J 3 HOH B 16 1053 1053 HOH HOH . 
J 3 HOH B 17 1059 1059 HOH HOH . 
J 3 HOH B 18 1063 1063 HOH HOH . 
J 3 HOH B 19 1065 1065 HOH HOH . 
J 3 HOH B 20 1066 1066 HOH HOH . 
J 3 HOH B 21 1075 1075 HOH HOH . 
J 3 HOH B 22 1077 1077 HOH HOH . 
J 3 HOH B 23 1078 1078 HOH HOH . 
J 3 HOH B 24 1084 1084 HOH HOH . 
J 3 HOH B 25 1085 1085 HOH HOH . 
J 3 HOH B 26 1086 1086 HOH HOH . 
J 3 HOH B 27 1093 1093 HOH HOH . 
J 3 HOH B 28 1097 1097 HOH HOH . 
J 3 HOH B 29 1103 1103 HOH HOH . 
J 3 HOH B 30 1105 1105 HOH HOH . 
J 3 HOH B 31 1106 1106 HOH HOH . 
J 3 HOH B 32 1108 1108 HOH HOH . 
J 3 HOH B 33 1110 1110 HOH HOH . 
J 3 HOH B 34 1112 1112 HOH HOH . 
J 3 HOH B 35 1113 1113 HOH HOH . 
J 3 HOH B 36 1115 1115 HOH HOH . 
J 3 HOH B 37 1116 1116 HOH HOH . 
J 3 HOH B 38 1117 1117 HOH HOH . 
J 3 HOH B 39 1119 1119 HOH HOH . 
J 3 HOH B 40 1129 1129 HOH HOH . 
J 3 HOH B 41 1130 1130 HOH HOH . 
K 3 HOH C 1 1001 1001 HOH HOH . 
K 3 HOH C 2 1006 1006 HOH HOH . 
K 3 HOH C 3 1011 1011 HOH HOH . 
K 3 HOH C 4 1013 1013 HOH HOH . 
K 3 HOH C 5 1014 1014 HOH HOH . 
K 3 HOH C 6 1017 1017 HOH HOH . 
K 3 HOH C 7 1026 1026 HOH HOH . 
K 3 HOH C 8 1029 1029 HOH HOH . 
K 3 HOH C 9 1030 1030 HOH HOH . 
K 3 HOH C 10 1051 1051 HOH HOH . 
K 3 HOH C 11 1052 1052 HOH HOH . 
K 3 HOH C 12 1061 1061 HOH HOH . 
K 3 HOH C 13 1064 1064 HOH HOH . 
K 3 HOH C 14 1067 1067 HOH HOH . 
K 3 HOH C 15 1071 1071 HOH HOH . 
K 3 HOH C 16 1072 1072 HOH HOH . 
K 3 HOH C 17 1082 1082 HOH HOH . 
K 3 HOH C 18 1088 1088 HOH HOH . 
K 3 HOH C 19 1089 1089 HOH HOH . 
K 3 HOH C 20 1090 1090 HOH HOH . 
K 3 HOH C 21 1092 1092 HOH HOH . 
K 3 HOH C 22 1099 1099 HOH HOH . 
K 3 HOH C 23 1107 1107 HOH HOH . 
K 3 HOH C 24 1111 1111 HOH HOH . 
K 3 HOH C 25 1118 1118 HOH HOH . 
K 3 HOH C 26 1122 1122 HOH HOH . 
K 3 HOH C 27 1124 1124 HOH HOH . 
K 3 HOH C 28 1128 1128 HOH HOH . 
K 3 HOH C 29 1132 1132 HOH HOH . 
K 3 HOH C 30 1134 1134 HOH HOH . 
L 3 HOH D 1 1007 1007 HOH HOH . 
L 3 HOH D 2 1012 1012 HOH HOH . 
L 3 HOH D 3 1015 1015 HOH HOH . 
L 3 HOH D 4 1020 1020 HOH HOH . 
L 3 HOH D 5 1023 1023 HOH HOH . 
L 3 HOH D 6 1034 1034 HOH HOH . 
L 3 HOH D 7 1039 1039 HOH HOH . 
L 3 HOH D 8 1041 1041 HOH HOH . 
L 3 HOH D 9 1043 1043 HOH HOH . 
L 3 HOH D 10 1045 1045 HOH HOH . 
L 3 HOH D 11 1048 1048 HOH HOH . 
L 3 HOH D 12 1049 1049 HOH HOH . 
L 3 HOH D 13 1054 1054 HOH HOH . 
L 3 HOH D 14 1055 1055 HOH HOH . 
L 3 HOH D 15 1056 1056 HOH HOH . 
L 3 HOH D 16 1070 1070 HOH HOH . 
L 3 HOH D 17 1074 1074 HOH HOH . 
L 3 HOH D 18 1076 1076 HOH HOH . 
L 3 HOH D 19 1080 1080 HOH HOH . 
L 3 HOH D 20 1081 1081 HOH HOH . 
L 3 HOH D 21 1087 1087 HOH HOH . 
L 3 HOH D 22 1091 1091 HOH HOH . 
L 3 HOH D 23 1094 1094 HOH HOH . 
L 3 HOH D 24 1095 1095 HOH HOH . 
L 3 HOH D 25 1101 1101 HOH HOH . 
L 3 HOH D 26 1104 1104 HOH HOH . 
L 3 HOH D 27 1114 1114 HOH HOH . 
L 3 HOH D 28 1125 1125 HOH HOH . 
L 3 HOH D 29 1127 1127 HOH HOH . 
L 3 HOH D 30 1133 1133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . F 2 -11.846 66.933 47.862 1 45.67 ? N ARG 492 B 1 
HETATM 2 C CA ARG . . . F 2 -11.145 65.737 48.406 1 46.27 ? CA ARG 492 B 1 
HETATM 3 C C ARG . . . F 2 -11.08 64.599 47.402 1 48.24 ? C ARG 492 B 1 
HETATM 4 O O ARG . . . F 2 -11.603 64.786 46.292 1 49.8 ? O ARG 492 B 1 
HETATM 5 C CB ARG . . . F 2 -11.826 65.196 49.656 1 47.06 ? CB ARG 492 B 1 
HETATM 6 C CG ARG . . . F 2 -12.005 66.175 50.778 1 49.38 ? CG ARG 492 B 1 
HETATM 7 C CD ARG . . . F 2 -12.627 65.49 51.972 1 49.62 ? CD ARG 492 B 1 
HETATM 8 N NE ARG . . . F 2 -11.673 65.543 53.086 1 50.43 ? NE ARG 492 B 1 
HETATM 9 C CZ ARG . . . F 2 -11.829 65.041 54.301 1 49.78 ? CZ ARG 492 B 1 
HETATM 10 N NH1 ARG . . . F 2 -12.927 64.394 54.645 1 50.57 ? NH1 ARG 492 B 1 
HETATM 11 N NH2 ARG . . . F 2 -10.857 65.193 55.183 1 51.72 ? NH2 ARG 492 B 1 
HETATM 12 O OXT ARG . . . F 2 -10.518 63.522 47.727 1 48.3 ? OXT ARG 492 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#