data_2E9F # _model_server_result.job_id g8-ZheI3fz6qh2UxdGuN0Q _model_server_result.datetime_utc '2024-11-13 20:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":494}' # _entry.id 2E9F # _exptl.entry_id 2E9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2E9F _cell.length_a 78.336 _cell.length_b 119.787 _cell.length_c 257.839 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 2E9F _atom_sites.fract_transf_matrix[1][1] 0.012766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ARG B 1 491 491 ARG ARG . F 2 ARG B 1 492 492 ARG ARG . G 2 ARG B 1 493 493 ARG ARG . H 2 ARG B 1 494 494 ARG ARG . I 3 HOH A 1 1002 1002 HOH HOH . I 3 HOH A 2 1003 1003 HOH HOH . I 3 HOH A 3 1016 1016 HOH HOH . I 3 HOH A 4 1021 1021 HOH HOH . I 3 HOH A 5 1022 1022 HOH HOH . I 3 HOH A 6 1024 1024 HOH HOH . I 3 HOH A 7 1025 1025 HOH HOH . I 3 HOH A 8 1028 1028 HOH HOH . I 3 HOH A 9 1037 1037 HOH HOH . I 3 HOH A 10 1040 1040 HOH HOH . I 3 HOH A 11 1044 1044 HOH HOH . I 3 HOH A 12 1046 1046 HOH HOH . I 3 HOH A 13 1047 1047 HOH HOH . I 3 HOH A 14 1050 1050 HOH HOH . I 3 HOH A 15 1057 1057 HOH HOH . I 3 HOH A 16 1058 1058 HOH HOH . I 3 HOH A 17 1060 1060 HOH HOH . I 3 HOH A 18 1062 1062 HOH HOH . I 3 HOH A 19 1068 1068 HOH HOH . I 3 HOH A 20 1069 1069 HOH HOH . I 3 HOH A 21 1073 1073 HOH HOH . I 3 HOH A 22 1079 1079 HOH HOH . I 3 HOH A 23 1083 1083 HOH HOH . I 3 HOH A 24 1096 1096 HOH HOH . I 3 HOH A 25 1098 1098 HOH HOH . I 3 HOH A 26 1100 1100 HOH HOH . I 3 HOH A 27 1102 1102 HOH HOH . I 3 HOH A 28 1109 1109 HOH HOH . I 3 HOH A 29 1120 1120 HOH HOH . I 3 HOH A 30 1121 1121 HOH HOH . I 3 HOH A 31 1123 1123 HOH HOH . I 3 HOH A 32 1126 1126 HOH HOH . I 3 HOH A 33 1131 1131 HOH HOH . I 3 HOH A 34 1135 1135 HOH HOH . J 3 HOH B 1 1004 1004 HOH HOH . J 3 HOH B 2 1005 1005 HOH HOH . J 3 HOH B 3 1008 1008 HOH HOH . J 3 HOH B 4 1009 1009 HOH HOH . J 3 HOH B 5 1010 1010 HOH HOH . J 3 HOH B 6 1018 1018 HOH HOH . J 3 HOH B 7 1019 1019 HOH HOH . J 3 HOH B 8 1027 1027 HOH HOH . J 3 HOH B 9 1031 1031 HOH HOH . J 3 HOH B 10 1032 1032 HOH HOH . J 3 HOH B 11 1033 1033 HOH HOH . J 3 HOH B 12 1035 1035 HOH HOH . J 3 HOH B 13 1036 1036 HOH HOH . J 3 HOH B 14 1038 1038 HOH HOH . J 3 HOH B 15 1042 1042 HOH HOH . J 3 HOH B 16 1053 1053 HOH HOH . J 3 HOH B 17 1059 1059 HOH HOH . J 3 HOH B 18 1063 1063 HOH HOH . J 3 HOH B 19 1065 1065 HOH HOH . J 3 HOH B 20 1066 1066 HOH HOH . J 3 HOH B 21 1075 1075 HOH HOH . J 3 HOH B 22 1077 1077 HOH HOH . J 3 HOH B 23 1078 1078 HOH HOH . J 3 HOH B 24 1084 1084 HOH HOH . J 3 HOH B 25 1085 1085 HOH HOH . J 3 HOH B 26 1086 1086 HOH HOH . J 3 HOH B 27 1093 1093 HOH HOH . J 3 HOH B 28 1097 1097 HOH HOH . J 3 HOH B 29 1103 1103 HOH HOH . J 3 HOH B 30 1105 1105 HOH HOH . J 3 HOH B 31 1106 1106 HOH HOH . J 3 HOH B 32 1108 1108 HOH HOH . J 3 HOH B 33 1110 1110 HOH HOH . J 3 HOH B 34 1112 1112 HOH HOH . J 3 HOH B 35 1113 1113 HOH HOH . J 3 HOH B 36 1115 1115 HOH HOH . J 3 HOH B 37 1116 1116 HOH HOH . J 3 HOH B 38 1117 1117 HOH HOH . J 3 HOH B 39 1119 1119 HOH HOH . J 3 HOH B 40 1129 1129 HOH HOH . J 3 HOH B 41 1130 1130 HOH HOH . K 3 HOH C 1 1001 1001 HOH HOH . K 3 HOH C 2 1006 1006 HOH HOH . K 3 HOH C 3 1011 1011 HOH HOH . K 3 HOH C 4 1013 1013 HOH HOH . K 3 HOH C 5 1014 1014 HOH HOH . K 3 HOH C 6 1017 1017 HOH HOH . K 3 HOH C 7 1026 1026 HOH HOH . K 3 HOH C 8 1029 1029 HOH HOH . K 3 HOH C 9 1030 1030 HOH HOH . K 3 HOH C 10 1051 1051 HOH HOH . K 3 HOH C 11 1052 1052 HOH HOH . K 3 HOH C 12 1061 1061 HOH HOH . K 3 HOH C 13 1064 1064 HOH HOH . K 3 HOH C 14 1067 1067 HOH HOH . K 3 HOH C 15 1071 1071 HOH HOH . K 3 HOH C 16 1072 1072 HOH HOH . K 3 HOH C 17 1082 1082 HOH HOH . K 3 HOH C 18 1088 1088 HOH HOH . K 3 HOH C 19 1089 1089 HOH HOH . K 3 HOH C 20 1090 1090 HOH HOH . K 3 HOH C 21 1092 1092 HOH HOH . K 3 HOH C 22 1099 1099 HOH HOH . K 3 HOH C 23 1107 1107 HOH HOH . K 3 HOH C 24 1111 1111 HOH HOH . K 3 HOH C 25 1118 1118 HOH HOH . K 3 HOH C 26 1122 1122 HOH HOH . K 3 HOH C 27 1124 1124 HOH HOH . K 3 HOH C 28 1128 1128 HOH HOH . K 3 HOH C 29 1132 1132 HOH HOH . K 3 HOH C 30 1134 1134 HOH HOH . L 3 HOH D 1 1007 1007 HOH HOH . L 3 HOH D 2 1012 1012 HOH HOH . L 3 HOH D 3 1015 1015 HOH HOH . L 3 HOH D 4 1020 1020 HOH HOH . L 3 HOH D 5 1023 1023 HOH HOH . L 3 HOH D 6 1034 1034 HOH HOH . L 3 HOH D 7 1039 1039 HOH HOH . L 3 HOH D 8 1041 1041 HOH HOH . L 3 HOH D 9 1043 1043 HOH HOH . L 3 HOH D 10 1045 1045 HOH HOH . L 3 HOH D 11 1048 1048 HOH HOH . L 3 HOH D 12 1049 1049 HOH HOH . L 3 HOH D 13 1054 1054 HOH HOH . L 3 HOH D 14 1055 1055 HOH HOH . L 3 HOH D 15 1056 1056 HOH HOH . L 3 HOH D 16 1070 1070 HOH HOH . L 3 HOH D 17 1074 1074 HOH HOH . L 3 HOH D 18 1076 1076 HOH HOH . L 3 HOH D 19 1080 1080 HOH HOH . L 3 HOH D 20 1081 1081 HOH HOH . L 3 HOH D 21 1087 1087 HOH HOH . L 3 HOH D 22 1091 1091 HOH HOH . L 3 HOH D 23 1094 1094 HOH HOH . L 3 HOH D 24 1095 1095 HOH HOH . L 3 HOH D 25 1101 1101 HOH HOH . L 3 HOH D 26 1104 1104 HOH HOH . L 3 HOH D 27 1114 1114 HOH HOH . L 3 HOH D 28 1125 1125 HOH HOH . L 3 HOH D 29 1127 1127 HOH HOH . L 3 HOH D 30 1133 1133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . H 2 15.59 36.063 51.992 1 46.7 ? N ARG 494 B 1 HETATM 2 C CA ARG . . . H 2 14.745 37.293 52.129 1 46.65 ? CA ARG 494 B 1 HETATM 3 C C ARG . . . H 2 14.915 38.219 50.938 1 47.53 ? C ARG 494 B 1 HETATM 4 O O ARG . . . H 2 15.696 37.86 50.044 1 49.9 ? O ARG 494 B 1 HETATM 5 C CB ARG . . . H 2 15.092 38.054 53.422 1 45.49 ? CB ARG 494 B 1 HETATM 6 C CG ARG . . . H 2 14.947 37.212 54.666 1 43.84 ? CG ARG 494 B 1 HETATM 7 C CD ARG . . . H 2 15.248 37.958 55.935 1 42.75 ? CD ARG 494 B 1 HETATM 8 N NE ARG . . . H 2 14.115 37.848 56.853 1 44.92 ? NE ARG 494 B 1 HETATM 9 C CZ ARG . . . H 2 14.044 38.375 58.072 1 46.76 ? CZ ARG 494 B 1 HETATM 10 N NH1 ARG . . . H 2 15.054 39.077 58.579 1 47.32 ? NH1 ARG 494 B 1 HETATM 11 N NH2 ARG . . . H 2 12.944 38.193 58.795 1 48.03 ? NH2 ARG 494 B 1 HETATM 12 O OXT ARG . . . H 2 14.276 39.289 50.899 1 47.71 ? OXT ARG 494 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #