data_2E9T # _model_server_result.job_id 3Lkplc0GAHRcZp-T1enI9Q _model_server_result.datetime_utc '2025-09-09 01:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":780}' # _entry.id 2E9T # _exptl.entry_id 2E9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E9T _cell.length_a 95.597 _cell.length_b 95.597 _cell.length_c 201.155 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,M,N,Q 1 1 C,D,F,J,K,L,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' C 6 C C 920 1_555 B P 5FU 7 C 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? covale ? covale2 D O3' C 6 F C 920 1_555 D P 5FU 7 F 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 E OD1 ASP 238 A ASP 238 1_555 G MG MG . A MG 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 E OD1 ASP 339 A ASP 339 1_555 G MG MG . A MG 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 G MG MG . A MG 780 1_555 Q O HOH . A HOH 962 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc4 G MG MG . A MG 780 1_555 Q O HOH . A HOH 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 H MG MG . A MG 781 1_555 I O32 PPV . A PPV 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc6 F NZ LYS 172 D LYS 172 1_555 K MG MG . D MG 1781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc7 F OD1 ASP 238 D ASP 238 1_555 J MG MG . D MG 1780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc8 F OD1 ASP 339 D ASP 339 1_555 J MG MG . D MG 1780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc9 F O THR 384 D THR 384 1_555 J MG MG . D MG 1780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc10 J MG MG . D MG 1780 1_555 R O HOH . D HOH 1961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc11 J MG MG . D MG 1780 1_555 R O HOH . D HOH 1963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc12 K MG MG . D MG 1781 1_555 L O32 PPV . D PPV 1930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? hydrog WATSON-CRICK hydrog1 A N1 A 2 B A 904 1_555 B N3 5FU 7 C 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 A 2 B A 904 1_555 B O4 5FU 7 C 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 G 3 B G 905 1_555 B N3 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 G 3 B G 905 1_555 B O2 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 G 3 B G 905 1_555 B N4 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 4 B G 906 1_555 B N3 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 4 B G 906 1_555 B O2 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 4 B G 906 1_555 B N4 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 G 5 B G 907 1_555 B N3 C 4 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 G 5 B G 907 1_555 B O2 C 4 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 G 5 B G 907 1_555 B N4 C 4 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 C 6 B C 908 1_555 B N1 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 C 6 B C 908 1_555 B O6 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 C 6 B C 908 1_555 B N2 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 C 7 B C 909 1_555 B N1 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 C 7 B C 909 1_555 B O6 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 C 7 B C 909 1_555 B N2 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog18 A N4 C 8 B C 910 1_555 B O6 G 1 C G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog19 C O2 U 1 E U 903 1_555 C N6 A 2 E A 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 A 2 E A 904 1_555 D N3 5FU 7 F 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N6 A 2 E A 904 1_555 D O4 5FU 7 F 5FU 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 G 3 E G 905 1_555 D N3 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N2 G 3 E G 905 1_555 D O2 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O6 G 3 E G 905 1_555 D N4 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 G 4 E G 906 1_555 D N3 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N2 G 4 E G 906 1_555 D O2 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C O6 G 4 E G 906 1_555 D N4 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N1 G 5 E G 907 1_555 D N3 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N2 G 5 E G 907 1_555 D O2 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C O6 G 5 E G 907 1_555 D N4 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 C 6 E C 908 1_555 D N1 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N4 C 6 E C 908 1_555 D O6 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C O2 C 6 E C 908 1_555 D N2 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N3 C 7 E C 909 1_555 D N1 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N4 C 7 E C 909 1_555 D O6 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C O2 C 7 E C 909 1_555 D N2 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N3 C 8 E C 910 1_555 D N1 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N4 C 8 E C 910 1_555 D O6 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O2 C 8 E C 910 1_555 D N2 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2E9T _atom_sites.fract_transf_matrix[1][1] 0.010461 _atom_sites.fract_transf_matrix[1][2] 0.006039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 780 780 MG MG . H 4 MG A 1 781 781 MG MG . I 5 PPV A 1 930 930 PPV PPV . J 4 MG D 1 1780 1780 MG MG . K 4 MG D 1 1781 1781 MG MG . L 5 PPV D 1 1930 1930 PPV PPV . M 6 HOH B 1 959 959 HOH HOH . M 6 HOH B 2 965 965 HOH HOH . N 6 HOH C 1 953 953 HOH HOH . O 6 HOH E 1 988 988 HOH HOH . O 6 HOH E 2 1974 1974 HOH HOH . P 6 HOH F 1 1953 1953 HOH HOH . Q 6 HOH A 1 950 950 HOH HOH . Q 6 HOH A 2 951 951 HOH HOH . Q 6 HOH A 3 952 952 HOH HOH . Q 6 HOH A 4 954 954 HOH HOH . Q 6 HOH A 5 955 955 HOH HOH . Q 6 HOH A 6 956 956 HOH HOH . Q 6 HOH A 7 958 958 HOH HOH . Q 6 HOH A 8 960 960 HOH HOH . Q 6 HOH A 9 961 961 HOH HOH . Q 6 HOH A 10 962 962 HOH HOH . Q 6 HOH A 11 963 963 HOH HOH . Q 6 HOH A 12 964 964 HOH HOH . Q 6 HOH A 13 966 966 HOH HOH . Q 6 HOH A 14 967 967 HOH HOH . Q 6 HOH A 15 968 968 HOH HOH . Q 6 HOH A 16 969 969 HOH HOH . Q 6 HOH A 17 970 970 HOH HOH . Q 6 HOH A 18 971 971 HOH HOH . Q 6 HOH A 19 972 972 HOH HOH . Q 6 HOH A 20 973 973 HOH HOH . Q 6 HOH A 21 974 974 HOH HOH . Q 6 HOH A 22 975 975 HOH HOH . Q 6 HOH A 23 976 976 HOH HOH . Q 6 HOH A 24 977 977 HOH HOH . Q 6 HOH A 25 978 978 HOH HOH . Q 6 HOH A 26 979 979 HOH HOH . Q 6 HOH A 27 980 980 HOH HOH . Q 6 HOH A 28 981 981 HOH HOH . Q 6 HOH A 29 982 982 HOH HOH . Q 6 HOH A 30 983 983 HOH HOH . Q 6 HOH A 31 984 984 HOH HOH . Q 6 HOH A 32 985 985 HOH HOH . Q 6 HOH A 33 986 986 HOH HOH . Q 6 HOH A 34 987 987 HOH HOH . Q 6 HOH A 35 989 989 HOH HOH . R 6 HOH D 1 1950 1950 HOH HOH . R 6 HOH D 2 1951 1951 HOH HOH . R 6 HOH D 3 1952 1952 HOH HOH . R 6 HOH D 4 1954 1954 HOH HOH . R 6 HOH D 5 1955 1955 HOH HOH . R 6 HOH D 6 1956 1956 HOH HOH . R 6 HOH D 7 1957 1957 HOH HOH . R 6 HOH D 8 1958 1958 HOH HOH . R 6 HOH D 9 1959 1959 HOH HOH . R 6 HOH D 10 1960 1960 HOH HOH . R 6 HOH D 11 1961 1961 HOH HOH . R 6 HOH D 12 1962 1962 HOH HOH . R 6 HOH D 13 1963 1963 HOH HOH . R 6 HOH D 14 1964 1964 HOH HOH . R 6 HOH D 15 1965 1965 HOH HOH . R 6 HOH D 16 1966 1966 HOH HOH . R 6 HOH D 17 1967 1967 HOH HOH . R 6 HOH D 18 1968 1968 HOH HOH . R 6 HOH D 19 1969 1969 HOH HOH . R 6 HOH D 20 1970 1970 HOH HOH . R 6 HOH D 21 1971 1971 HOH HOH . R 6 HOH D 22 1972 1972 HOH HOH . R 6 HOH D 23 1973 1973 HOH HOH . R 6 HOH D 24 1975 1975 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.065 _atom_site.Cartn_y 53.333 _atom_site.Cartn_z 118.372 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 780 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #