data_2E9Z # _model_server_result.job_id WJ3pNnfA20xewnHwsy-Klg _model_server_result.datetime_utc '2024-12-26 05:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2e9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":665}' # _entry.id 2E9Z # _exptl.entry_id 2E9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2E9Z _cell.length_a 94.11 _cell.length_b 94.11 _cell.length_c 99.362 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2E9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 238 A ASP 238 1_555 D MG MG . A MG 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc2 C O TYR 241 A TYR 241 1_555 E MG MG . A MG 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc3 C OD2 ASP 339 A ASP 339 1_555 D MG MG . A MG 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc4 C O THR 384 A THR 384 1_555 D MG MG . A MG 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc5 F O3A UTP . A UTP 993 1_555 E MG MG . A MG 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? hydrog 'U-A PAIR' hydrog1 A N3 U 3 B U 904 1_555 B N1 A 7 C A 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog2 A N1 G 4 B G 905 1_555 B N3 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 G 5 B G 906 1_555 B N3 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 G 5 B G 906 1_555 B O2 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 G 5 B G 906 1_555 B N4 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog6 A N1 G 6 B G 907 1_555 B N3 C 4 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 7 B C 908 1_555 B N1 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 7 B C 908 1_555 B O6 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 7 B C 908 1_555 B N2 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog10 A O2 C 8 B C 909 1_555 B N1 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog11 A O2 C 9 B C 910 1_555 B N1 G 1 C G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 375 n n O11 H11 PPV sing 376 n n P1 O21 PPV sing 377 n n P1 O31 PPV doub 378 n n P1 OPP PPV sing 379 n n O21 H21 PPV sing 380 n n OPP P2 PPV sing 381 n n P2 O12 PPV sing 382 n n P2 O22 PPV doub 383 n n P2 O32 PPV sing 384 n n O12 H12 PPV sing 385 n n O32 H32 PPV sing 386 n n # _atom_sites.entry_id 2E9Z _atom_sites.fract_transf_matrix[1][1] 0.010626 _atom_sites.fract_transf_matrix[1][2] 0.006135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1030 1030 MG MG . E 4 MG A 1 1031 1031 MG MG . F 5 UTP A 1 993 993 UTP UTP . G 6 PPV A 1 665 665 PPV PPV . H 7 HOH B 1 516 516 HOH HOH . H 7 HOH B 2 523 523 HOH HOH . I 7 HOH C 1 517 517 HOH HOH . I 7 HOH C 2 522 522 HOH HOH . I 7 HOH C 3 527 527 HOH HOH . J 7 HOH A 1 1032 236 HOH HOH . J 7 HOH A 2 1033 501 HOH HOH . J 7 HOH A 3 1034 502 HOH HOH . J 7 HOH A 4 1035 505 HOH HOH . J 7 HOH A 5 1036 507 HOH HOH . J 7 HOH A 6 1037 508 HOH HOH . J 7 HOH A 7 1038 510 HOH HOH . J 7 HOH A 8 1039 511 HOH HOH . J 7 HOH A 9 1040 512 HOH HOH . J 7 HOH A 10 1041 513 HOH HOH . J 7 HOH A 11 1042 520 HOH HOH . J 7 HOH A 12 1043 524 HOH HOH . J 7 HOH A 13 1044 525 HOH HOH . J 7 HOH A 14 1045 526 HOH HOH . J 7 HOH A 15 1046 528 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . G 6 17.06 31.192 15.564 0.5 61.16 ? O11 PPV 665 A 1 HETATM 2 P P1 PPV . . . G 6 18.335 31.919 15.926 0.5 61.33 ? P1 PPV 665 A 1 HETATM 3 O O21 PPV . . . G 6 19.197 30.866 16.584 0.5 60.81 ? O21 PPV 665 A 1 HETATM 4 O O31 PPV . . . G 6 19.089 32.534 14.635 0.5 60.66 ? O31 PPV 665 A 1 HETATM 5 O OPP PPV . . . G 6 17.971 32.966 16.967 0.5 61.2 ? OPP PPV 665 A 1 HETATM 6 P P2 PPV . . . G 6 17.237 32.948 18.409 0.5 60.97 ? P2 PPV 665 A 1 HETATM 7 O O12 PPV . . . G 6 18.152 33.562 19.442 0.6 60.8 ? O12 PPV 665 A 1 HETATM 8 O O22 PPV . . . G 6 16.022 33.843 18.455 0.5 61.33 ? O22 PPV 665 A 1 HETATM 9 O O32 PPV . . . G 6 16.806 31.448 18.809 0.5 61.69 ? O32 PPV 665 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #