data_2EAR # _model_server_result.job_id 3YXTheaSNCi6AK_k2CD1RA _model_server_result.datetime_utc '2024-11-06 20:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ear # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1003}' # _entry.id 2EAR # _exptl.entry_id 2EAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.9 _cell.angle_gamma 90 _cell.entry_id 2EAR _cell.length_a 62.849 _cell.length_b 95.945 _cell.length_c 154.493 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 877 A CYS 876 1_555 A SG CYS 889 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.805 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 294 n n C34 H341 TG1 sing 295 n n C34 H342 TG1 sing 296 n n C34 H343 TG1 sing 297 n n C11 C7 TG1 sing 298 n n C11 C12 TG1 sing 299 n n C11 O11 TG1 sing 300 n n C7 C8 TG1 sing 301 n n C7 C6 TG1 sing 302 n n C7 O6 TG1 sing 303 n n C8 C9 TG1 sing 304 n n C8 O7 TG1 sing 305 n n C8 HC8 TG1 sing 306 n n C9 C10 TG1 sing 307 n n C9 HC91 TG1 sing 308 n n C9 HC92 TG1 sing 309 n n C10 C1 TG1 sing 310 n n C10 C31 TG1 sing 311 n n C10 O9 TG1 sing 312 n n C1 C2 TG1 sing 313 n n C1 C5 TG1 sing 314 n n C1 HC1 TG1 sing 315 n n C2 O1 TG1 sing 316 n n C2 C3 TG1 sing 317 n n C2 HC2 TG1 sing 318 n n O1 C13 TG1 sing 319 n n C13 O2 TG1 doub 320 n n C13 C14 TG1 sing 321 n n C14 C15 TG1 sing 322 n n C14 H141 TG1 sing 323 n n C14 H142 TG1 sing 324 n n C15 C16 TG1 sing 325 n n C15 H151 TG1 sing 326 n n C15 H152 TG1 sing 327 n n C16 C17 TG1 sing 328 n n C16 H161 TG1 sing 329 n n C16 H162 TG1 sing 330 n n C17 C18 TG1 sing 331 n n C17 H171 TG1 sing 332 n n C17 H172 TG1 sing 333 n n C18 C19 TG1 sing 334 n n C18 H181 TG1 sing 335 n n C18 H182 TG1 sing 336 n n C19 C20 TG1 sing 337 n n C19 H191 TG1 sing 338 n n C19 H192 TG1 sing 339 n n C20 H201 TG1 sing 340 n n C20 H202 TG1 sing 341 n n C20 H203 TG1 sing 342 n n C3 O3 TG1 sing 343 n n C3 C4 TG1 sing 344 n n C3 HC3 TG1 sing 345 n n O3 C21 TG1 sing 346 n n C21 O4 TG1 doub 347 n n C21 C22 TG1 sing 348 n n C22 C23 TG1 sing 349 n n C22 C24 TG1 doub 350 z n C23 H231 TG1 sing 351 n n C23 H232 TG1 sing 352 n n C23 H233 TG1 sing 353 n n C24 C25 TG1 sing 354 n n C24 H24 TG1 sing 355 n n C25 H251 TG1 sing 356 n n C25 H252 TG1 sing 357 n n C25 H253 TG1 sing 358 n n C4 C26 TG1 sing 359 n n C4 C5 TG1 doub 360 n n C26 H261 TG1 sing 361 n n C26 H262 TG1 sing 362 n n C26 H263 TG1 sing 363 n n C5 C6 TG1 sing 364 n n C6 O5 TG1 sing 365 n n C6 HC6 TG1 sing 366 n n O5 C12 TG1 sing 367 n n C12 O12 TG1 doub 368 n n C31 H311 TG1 sing 369 n n C31 H312 TG1 sing 370 n n C31 H313 TG1 sing 371 n n O9 C32 TG1 sing 372 n n C32 O10 TG1 doub 373 n n C32 C33 TG1 sing 374 n n C33 H331 TG1 sing 375 n n C33 H332 TG1 sing 376 n n C33 H333 TG1 sing 377 n n O7 C27 TG1 sing 378 n n C27 O8 TG1 doub 379 n n C27 C28 TG1 sing 380 n n C28 C29 TG1 sing 381 n n C28 H281 TG1 sing 382 n n C28 H282 TG1 sing 383 n n C29 C30 TG1 sing 384 n n C29 H291 TG1 sing 385 n n C29 H292 TG1 sing 386 n n C30 H301 TG1 sing 387 n n C30 H302 TG1 sing 388 n n C30 H303 TG1 sing 389 n n O6 HO6 TG1 sing 390 n n O11 HO11 TG1 sing 391 n n # _atom_sites.entry_id 2EAR _atom_sites.fract_transf_matrix[1][1] 0.015911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001364 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id TG1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1003 _pdbx_nonpoly_scheme.auth_seq_num 1003 _pdbx_nonpoly_scheme.pdb_mon_id TG1 _pdbx_nonpoly_scheme.auth_mon_id TG1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . B 2 8.779 -19.201 17.791 1 152.41 ? C34 TG1 1003 A 1 HETATM 2 C C11 TG1 . . . B 2 9.312 -19.344 16.387 1 152.41 ? C11 TG1 1003 A 1 HETATM 3 C C7 TG1 . . . B 2 8.329 -18.827 15.271 1 152.41 ? C7 TG1 1003 A 1 HETATM 4 C C8 TG1 . . . B 2 8.178 -17.267 15.169 1 152.41 ? C8 TG1 1003 A 1 HETATM 5 C C9 TG1 . . . B 2 7.282 -16.706 14.022 1 152.41 ? C9 TG1 1003 A 1 HETATM 6 C C10 TG1 . . . B 2 7.517 -17.115 12.501 1 152.41 ? C10 TG1 1003 A 1 HETATM 7 C C1 TG1 . . . B 2 7.423 -18.715 12.041 1 152.41 ? C1 TG1 1003 A 1 HETATM 8 C C2 TG1 . . . B 2 7.443 -19.026 10.416 1 152.41 ? C2 TG1 1003 A 1 HETATM 9 O O1 TG1 . . . B 2 6.456 -20.01 9.944 1 152.41 ? O1 TG1 1003 A 1 HETATM 10 C C13 TG1 . . . B 2 6.158 -20.303 8.535 1 152.41 ? C13 TG1 1003 A 1 HETATM 11 O O2 TG1 . . . B 2 6.509 -19.638 7.568 1 152.41 ? O2 TG1 1003 A 1 HETATM 12 C C14 TG1 . . . B 2 5.374 -21.617 8.35 1 152.41 ? C14 TG1 1003 A 1 HETATM 13 C C15 TG1 . . . B 2 4.893 -22.053 6.959 1 152.41 ? C15 TG1 1003 A 1 HETATM 14 C C16 TG1 . . . B 2 3.725 -21.242 6.37 1 152.41 ? C16 TG1 1003 A 1 HETATM 15 C C17 TG1 . . . B 2 3.18 -21.83 5.05 1 152.41 ? C17 TG1 1003 A 1 HETATM 16 C C18 TG1 . . . B 2 1.83 -21.199 4.644 1 152.41 ? C18 TG1 1003 A 1 HETATM 17 C C19 TG1 . . . B 2 1.348 -21.363 3.197 1 152.41 ? C19 TG1 1003 A 1 HETATM 18 C C20 TG1 . . . B 2 0.051 -20.589 2.977 1 152.41 ? C20 TG1 1003 A 1 HETATM 19 C C3 TG1 . . . B 2 8.778 -19.815 10.186 1 152.41 ? C3 TG1 1003 A 1 HETATM 20 O O3 TG1 . . . B 2 9.707 -18.97 9.395 1 152.41 ? O3 TG1 1003 A 1 HETATM 21 C C21 TG1 . . . B 2 9.856 -19.272 8.083 1 152.41 ? C21 TG1 1003 A 1 HETATM 22 O O4 TG1 . . . B 2 9.28 -20.367 7.389 1 152.41 ? O4 TG1 1003 A 1 HETATM 23 C C22 TG1 . . . B 2 10.472 -18.036 7.26 1 152.41 ? C22 TG1 1003 A 1 HETATM 24 C C23 TG1 . . . B 2 9.525 -17.602 6.211 1 152.41 ? C23 TG1 1003 A 1 HETATM 25 C C24 TG1 . . . B 2 11.563 -17.262 7.361 1 152.41 ? C24 TG1 1003 A 1 HETATM 26 C C25 TG1 . . . B 2 12.677 -17.265 8.373 1 152.41 ? C25 TG1 1003 A 1 HETATM 27 C C4 TG1 . . . B 2 9.36 -20.076 11.584 1 152.41 ? C4 TG1 1003 A 1 HETATM 28 C C26 TG1 . . . B 2 10.675 -20.825 11.71 1 152.41 ? C26 TG1 1003 A 1 HETATM 29 C C5 TG1 . . . B 2 8.64 -19.52 12.581 1 152.41 ? C5 TG1 1003 A 1 HETATM 30 C C6 TG1 . . . B 2 9.056 -19.527 14.09 1 152.41 ? C6 TG1 1003 A 1 HETATM 31 O O5 TG1 . . . B 2 9.265 -20.825 14.628 1 152.41 ? O5 TG1 1003 A 1 HETATM 32 C C12 TG1 . . . B 2 9.553 -20.712 15.926 1 152.41 ? C12 TG1 1003 A 1 HETATM 33 O O12 TG1 . . . B 2 9.938 -21.629 16.641 1 152.41 ? O12 TG1 1003 A 1 HETATM 34 C C31 TG1 . . . B 2 8.811 -16.44 11.997 1 152.41 ? C31 TG1 1003 A 1 HETATM 35 O O9 TG1 . . . B 2 6.673 -16.27 11.679 1 152.41 ? O9 TG1 1003 A 1 HETATM 36 C C32 TG1 . . . B 2 5.402 -15.827 11.697 1 152.41 ? C32 TG1 1003 A 1 HETATM 37 O O10 TG1 . . . B 2 4.525 -16.186 12.46 1 152.41 ? O10 TG1 1003 A 1 HETATM 38 C C33 TG1 . . . B 2 5.216 -14.853 10.669 1 152.41 ? C33 TG1 1003 A 1 HETATM 39 O O7 TG1 . . . B 2 9.559 -16.666 15.286 1 152.41 ? O7 TG1 1003 A 1 HETATM 40 C C27 TG1 . . . B 2 9.987 -16.086 16.483 1 152.41 ? C27 TG1 1003 A 1 HETATM 41 O O8 TG1 . . . B 2 9.247 -15.796 17.41 1 152.41 ? O8 TG1 1003 A 1 HETATM 42 C C28 TG1 . . . B 2 11.527 -16.046 16.562 1 152.41 ? C28 TG1 1003 A 1 HETATM 43 C C29 TG1 . . . B 2 12.103 -14.892 17.407 1 152.41 ? C29 TG1 1003 A 1 HETATM 44 C C30 TG1 . . . B 2 13.346 -15.281 18.201 1 152.41 ? C30 TG1 1003 A 1 HETATM 45 O O6 TG1 . . . B 2 7.02 -19.431 15.436 1 152.41 ? O6 TG1 1003 A 1 HETATM 46 O O11 TG1 . . . B 2 10.676 -18.953 16.422 1 152.41 ? O11 TG1 1003 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 46 #