data_2EAV # _model_server_result.job_id XPCxjhoSeNJLWhGj0SRTSw _model_server_result.datetime_utc '2024-10-18 22:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2EAV # _exptl.entry_id 2EAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EAV _cell.length_a 127.435 _cell.length_b 56.785 _cell.length_c 36.761 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 210 1_555 A SG CYS 124 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 18 A CYS 226 1_555 A SG CYS 62 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 38 A CYS 246 1_555 A SG CYS 44 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 2 B CYS 210 1_555 B SG CYS 124 B CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 B SG CYS 18 B CYS 226 1_555 B SG CYS 62 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 38 B CYS 246 1_555 B SG CYS 44 B CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 120 A ASP 328 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A NE2 HIS 162 A HIS 370 1_555 E NI NI . B NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 B OE2 GLU 116 B GLU 324 1_555 D NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc4 B OD2 ASP 120 B ASP 328 1_555 E NI NI . B NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 B NE2 GLN 123 B GLN 331 1_555 E NI NI . B NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc6 B ND1 HIS 140 B HIS 348 1_555 F NI NI . B NI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc7 B NE2 HIS 162 B HIS 370 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc8 B NE2 HIS 165 B HIS 373 1_555 H NI NI . B NI 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 F NI NI . B NI 502 1_555 J O HOH . B HOH 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc10 D NI NI . A NI 504 1_555 B OE1 GLU 116 B GLU 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc11 E NI NI . B NI 500 1_555 J O HOH . B HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc12 E NI NI . B NI 500 1_555 A NH1 ARG 145 A ARG 353 3_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc13 G NI NI . B NI 503 1_555 A ND2 ASN 39 A ASN 247 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc14 G NI NI . B NI 503 1_555 A OE1 GLU 43 A GLU 251 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc15 G NI NI . B NI 503 1_555 B NE2 HIS 17 B HIS 225 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2EAV _atom_sites.fract_transf_matrix[1][1] 0.007847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 501 501 NI NI2 . D 2 NI A 1 504 504 NI NI2 . E 2 NI B 1 500 500 NI NI2 . F 2 NI B 1 502 502 NI NI2 . G 2 NI B 1 503 503 NI NI2 . H 2 NI B 1 505 505 NI NI2 . I 3 HOH A 1 2 2 HOH TIP . I 3 HOH A 2 5 5 HOH TIP . I 3 HOH A 3 7 7 HOH TIP . I 3 HOH A 4 9 9 HOH TIP . I 3 HOH A 5 11 11 HOH TIP . I 3 HOH A 6 12 12 HOH TIP . I 3 HOH A 7 13 13 HOH TIP . I 3 HOH A 8 15 15 HOH TIP . I 3 HOH A 9 16 16 HOH TIP . I 3 HOH A 10 17 17 HOH TIP . I 3 HOH A 11 19 19 HOH TIP . I 3 HOH A 12 20 20 HOH TIP . I 3 HOH A 13 21 21 HOH TIP . I 3 HOH A 14 22 22 HOH TIP . I 3 HOH A 15 28 28 HOH TIP . I 3 HOH A 16 29 29 HOH TIP . I 3 HOH A 17 32 32 HOH TIP . I 3 HOH A 18 33 33 HOH TIP . I 3 HOH A 19 37 37 HOH TIP . I 3 HOH A 20 38 38 HOH TIP . I 3 HOH A 21 40 40 HOH TIP . I 3 HOH A 22 43 43 HOH TIP . I 3 HOH A 23 45 45 HOH TIP . I 3 HOH A 24 46 46 HOH TIP . I 3 HOH A 25 48 48 HOH TIP . I 3 HOH A 26 49 49 HOH TIP . I 3 HOH A 27 50 50 HOH TIP . I 3 HOH A 28 51 51 HOH TIP . I 3 HOH A 29 53 53 HOH TIP . I 3 HOH A 30 54 54 HOH TIP . I 3 HOH A 31 56 56 HOH TIP . I 3 HOH A 32 57 57 HOH TIP . I 3 HOH A 33 59 59 HOH TIP . I 3 HOH A 34 60 60 HOH TIP . I 3 HOH A 35 62 62 HOH TIP . I 3 HOH A 36 63 63 HOH TIP . I 3 HOH A 37 64 64 HOH TIP . I 3 HOH A 38 65 65 HOH TIP . I 3 HOH A 39 72 72 HOH TIP . I 3 HOH A 40 77 77 HOH TIP . I 3 HOH A 41 79 79 HOH TIP . I 3 HOH A 42 80 80 HOH TIP . I 3 HOH A 43 82 82 HOH TIP . I 3 HOH A 44 83 83 HOH TIP . I 3 HOH A 45 84 84 HOH TIP . I 3 HOH A 46 85 85 HOH TIP . I 3 HOH A 47 86 86 HOH TIP . I 3 HOH A 48 88 88 HOH TIP . I 3 HOH A 49 90 90 HOH TIP . I 3 HOH A 50 91 91 HOH TIP . I 3 HOH A 51 92 92 HOH TIP . I 3 HOH A 52 93 93 HOH TIP . I 3 HOH A 53 96 96 HOH TIP . I 3 HOH A 54 97 97 HOH TIP . I 3 HOH A 55 100 100 HOH TIP . I 3 HOH A 56 101 101 HOH TIP . I 3 HOH A 57 103 103 HOH TIP . I 3 HOH A 58 105 105 HOH TIP . I 3 HOH A 59 110 110 HOH TIP . I 3 HOH A 60 112 112 HOH TIP . I 3 HOH A 61 115 115 HOH TIP . I 3 HOH A 62 116 116 HOH TIP . I 3 HOH A 63 120 120 HOH TIP . I 3 HOH A 64 121 121 HOH TIP . I 3 HOH A 65 122 122 HOH TIP . I 3 HOH A 66 124 124 HOH TIP . I 3 HOH A 67 125 125 HOH TIP . I 3 HOH A 68 128 128 HOH TIP . I 3 HOH A 69 130 130 HOH TIP . I 3 HOH A 70 133 133 HOH TIP . I 3 HOH A 71 134 134 HOH TIP . I 3 HOH A 72 135 135 HOH TIP . I 3 HOH A 73 136 136 HOH TIP . J 3 HOH B 1 1 1 HOH TIP . J 3 HOH B 2 3 3 HOH TIP . J 3 HOH B 3 4 4 HOH TIP . J 3 HOH B 4 6 6 HOH TIP . J 3 HOH B 5 8 8 HOH TIP . J 3 HOH B 6 10 10 HOH TIP . J 3 HOH B 7 14 14 HOH TIP . J 3 HOH B 8 18 18 HOH TIP . J 3 HOH B 9 23 23 HOH TIP . J 3 HOH B 10 24 24 HOH TIP . J 3 HOH B 11 25 25 HOH TIP . J 3 HOH B 12 26 26 HOH TIP . J 3 HOH B 13 27 27 HOH TIP . J 3 HOH B 14 30 30 HOH TIP . J 3 HOH B 15 31 31 HOH TIP . J 3 HOH B 16 34 34 HOH TIP . J 3 HOH B 17 35 35 HOH TIP . J 3 HOH B 18 36 36 HOH TIP . J 3 HOH B 19 39 39 HOH TIP . J 3 HOH B 20 41 41 HOH TIP . J 3 HOH B 21 42 42 HOH TIP . J 3 HOH B 22 44 44 HOH TIP . J 3 HOH B 23 47 47 HOH TIP . J 3 HOH B 24 52 52 HOH TIP . J 3 HOH B 25 55 55 HOH TIP . J 3 HOH B 26 58 58 HOH TIP . J 3 HOH B 27 61 61 HOH TIP . J 3 HOH B 28 66 66 HOH TIP . J 3 HOH B 29 67 67 HOH TIP . J 3 HOH B 30 68 68 HOH TIP . J 3 HOH B 31 69 69 HOH TIP . J 3 HOH B 32 70 70 HOH TIP . J 3 HOH B 33 71 71 HOH TIP . J 3 HOH B 34 73 73 HOH TIP . J 3 HOH B 35 74 74 HOH TIP . J 3 HOH B 36 75 75 HOH TIP . J 3 HOH B 37 76 76 HOH TIP . J 3 HOH B 38 78 78 HOH TIP . J 3 HOH B 39 81 81 HOH TIP . J 3 HOH B 40 87 87 HOH TIP . J 3 HOH B 41 89 89 HOH TIP . J 3 HOH B 42 94 94 HOH TIP . J 3 HOH B 43 95 95 HOH TIP . J 3 HOH B 44 98 98 HOH TIP . J 3 HOH B 45 99 99 HOH TIP . J 3 HOH B 46 102 102 HOH TIP . J 3 HOH B 47 104 104 HOH TIP . J 3 HOH B 48 106 106 HOH TIP . J 3 HOH B 49 107 107 HOH TIP . J 3 HOH B 50 108 108 HOH TIP . J 3 HOH B 51 109 109 HOH TIP . J 3 HOH B 52 111 111 HOH TIP . J 3 HOH B 53 113 113 HOH TIP . J 3 HOH B 54 114 114 HOH TIP . J 3 HOH B 55 117 117 HOH TIP . J 3 HOH B 56 118 118 HOH TIP . J 3 HOH B 57 119 119 HOH TIP . J 3 HOH B 58 123 123 HOH TIP . J 3 HOH B 59 126 126 HOH TIP . J 3 HOH B 60 127 127 HOH TIP . J 3 HOH B 61 129 129 HOH TIP . J 3 HOH B 62 131 131 HOH TIP . J 3 HOH B 63 132 132 HOH TIP . J 3 HOH B 64 137 137 HOH TIP . J 3 HOH B 65 138 138 HOH TIP . J 3 HOH B 66 139 139 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.58 _atom_site.Cartn_y -10.604 _atom_site.Cartn_z 14.033 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 500 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #