data_2EB3 # _model_server_result.job_id p0QK9TtqyQEq3b9SgvIgvw _model_server_result.datetime_utc '2024-11-16 20:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 2EB3 # _exptl.entry_id 2EB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EB3 _cell.length_a 144.686 _cell.length_b 144.686 _cell.length_c 144.686 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 20_544 -z+1/2,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 72.343 -72.343 -72.343 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2EB3 _atom_sites.fract_transf_matrix[1][1] 0.006912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 2001 2001 ANP ANP . C 3 HOH A 1 1 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 27.877 -47.611 4.649 1 129.76 ? PG ANP 2001 A 1 HETATM 2 O O1G ANP . . . B 2 27.451 -48.982 4.288 1 132.41 ? O1G ANP 2001 A 1 HETATM 3 O O2G ANP . . . B 2 28.078 -46.673 3.356 1 124.12 ? O2G ANP 2001 A 1 HETATM 4 O O3G ANP . . . B 2 29.291 -47.606 5.419 1 118.1 ? O3G ANP 2001 A 1 HETATM 5 P PB ANP . . . B 2 25.298 -47.145 5.191 1 105.09 ? PB ANP 2001 A 1 HETATM 6 O O1B ANP . . . B 2 24.966 -48.584 5.305 1 117.04 ? O1B ANP 2001 A 1 HETATM 7 O O2B ANP . . . B 2 24.391 -46.239 6.162 1 92.7 ? O2B ANP 2001 A 1 HETATM 8 N N3B ANP . . . B 2 26.833 -46.83 5.617 1 120.92 ? N3B ANP 2001 A 1 HETATM 9 P PA ANP . . . B 2 25.029 -47.466 2.404 1 91.43 ? PA ANP 2001 A 1 HETATM 10 O O1A ANP . . . B 2 25.742 -46.862 1.256 1 98.46 ? O1A ANP 2001 A 1 HETATM 11 O O2A ANP . . . B 2 25.661 -48.889 2.82 1 92.57 ? O2A ANP 2001 A 1 HETATM 12 O O3A ANP . . . B 2 25.098 -46.529 3.715 1 107.7 ? O3A ANP 2001 A 1 HETATM 13 O O5' ANP . . . B 2 23.464 -47.723 2.117 1 90.51 ? O5' ANP 2001 A 1 HETATM 14 C C5' ANP . . . B 2 22.61 -46.631 1.766 1 99.39 ? C5' ANP 2001 A 1 HETATM 15 C C4' ANP . . . B 2 21.16 -47.082 1.567 1 99.15 ? C4' ANP 2001 A 1 HETATM 16 O O4' ANP . . . B 2 21.13 -48.085 0.534 1 92.67 ? O4' ANP 2001 A 1 HETATM 17 C C3' ANP . . . B 2 20.668 -47.772 2.841 1 96.97 ? C3' ANP 2001 A 1 HETATM 18 O O3' ANP . . . B 2 19.239 -47.81 2.864 1 94.16 ? O3' ANP 2001 A 1 HETATM 19 C C2' ANP . . . B 2 21.229 -49.174 2.611 1 92.82 ? C2' ANP 2001 A 1 HETATM 20 O O2' ANP . . . B 2 20.513 -50.099 3.433 1 92.59 ? O2' ANP 2001 A 1 HETATM 21 C C1' ANP . . . B 2 20.83 -49.352 1.145 1 87.55 ? C1' ANP 2001 A 1 HETATM 22 N N9 ANP . . . B 2 21.58 -50.449 0.485 1 77.21 ? N9 ANP 2001 A 1 HETATM 23 C C8 ANP . . . B 2 22.881 -50.691 0.63 1 73.94 ? C8 ANP 2001 A 1 HETATM 24 N N7 ANP . . . B 2 23.234 -51.739 -0.111 1 59.85 ? N7 ANP 2001 A 1 HETATM 25 C C5 ANP . . . B 2 22.145 -52.176 -0.736 1 65.76 ? C5 ANP 2001 A 1 HETATM 26 C C6 ANP . . . B 2 21.903 -53.215 -1.625 1 65.93 ? C6 ANP 2001 A 1 HETATM 27 N N6 ANP . . . B 2 22.884 -54.044 -1.973 1 56.75 ? N6 ANP 2001 A 1 HETATM 28 N N1 ANP . . . B 2 20.658 -53.385 -2.098 1 44.92 ? N1 ANP 2001 A 1 HETATM 29 C C2 ANP . . . B 2 19.681 -52.585 -1.719 1 72.16 ? C2 ANP 2001 A 1 HETATM 30 N N3 ANP . . . B 2 19.876 -51.587 -0.869 1 68.71 ? N3 ANP 2001 A 1 HETATM 31 C C4 ANP . . . B 2 21.093 -51.355 -0.359 1 70.06 ? C4 ANP 2001 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #