data_2EC0 # _model_server_result.job_id 2iClfqcbJZaYPerUyiz0xw _model_server_result.datetime_utc '2024-12-25 18:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ec0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":3990}' # _entry.id 2EC0 # _exptl.entry_id 2EC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2EC0 _cell.length_a 95.656 _cell.length_b 95.656 _cell.length_c 201.458 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L,O 1 1 C,D,F,I,J,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OD1 ASP 238 A ASP 238 1_555 G MG MG . A MG 1990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc2 E OD1 ASP 339 A ASP 339 1_555 G MG MG . A MG 1990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc3 E O THR 384 A THR 384 1_555 G MG MG . A MG 1990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc4 O O HOH . A HOH 962 1_555 G MG MG . A MG 1990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc5 O O HOH . A HOH 963 1_555 G MG MG . A MG 1990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 F OD1 ASP 238 D ASP 238 1_555 I MG MG . D MG 3990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc7 F OD1 ASP 339 D ASP 339 1_555 I MG MG . D MG 3990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc8 F O THR 384 D THR 384 1_555 I MG MG . D MG 3990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc9 P O HOH . D HOH 2963 1_555 I MG MG . D MG 3990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc10 P O HOH . D HOH 2964 1_555 I MG MG . D MG 3990 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? hydrog WATSON-CRICK hydrog1 A N3 U 2 B U 904 1_555 B N1 A 7 C A 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 U 2 B U 904 1_555 B N6 A 7 C A 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 G 3 B G 905 1_555 B N3 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 G 3 B G 905 1_555 B O2 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 G 3 B G 905 1_555 B N4 C 6 C C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 4 B G 906 1_555 B N3 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 4 B G 906 1_555 B O2 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 4 B G 906 1_555 B N4 C 5 C C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog9 A N1 G 5 B G 907 1_555 B O2 C 4 C C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 C 6 B C 908 1_555 B N1 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 C 6 B C 908 1_555 B O6 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 C 6 B C 908 1_555 B N2 G 3 C G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 C 7 B C 909 1_555 B N1 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 C 7 B C 909 1_555 B O6 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 C 7 B C 909 1_555 B N2 G 2 C G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 C 8 B C 910 1_555 B N1 G 1 C G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 C 8 B C 910 1_555 B O6 G 1 C G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 C 8 B C 910 1_555 B N2 G 1 C G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 U 2 E U 904 1_555 D N1 A 7 F A 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 U 2 E U 904 1_555 D N6 A 7 F A 921 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 G 3 E G 905 1_555 D N3 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N2 G 3 E G 905 1_555 D O2 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O6 G 3 E G 905 1_555 D N4 C 6 F C 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N1 G 4 E G 906 1_555 D N3 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N2 G 4 E G 906 1_555 D O2 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O6 G 4 E G 906 1_555 D N4 C 5 F C 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N1 G 5 E G 907 1_555 D N3 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N2 G 5 E G 907 1_555 D O2 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O6 G 5 E G 907 1_555 D N4 C 4 F C 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N3 C 6 E C 908 1_555 D N1 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N4 C 6 E C 908 1_555 D O6 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O2 C 6 E C 908 1_555 D N2 G 3 F G 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N3 C 7 E C 909 1_555 D N1 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C N4 C 7 E C 909 1_555 D O6 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C O2 C 7 E C 909 1_555 D N2 G 2 F G 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N3 C 8 E C 910 1_555 D N1 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N4 C 8 E C 910 1_555 D O6 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O2 C 8 E C 910 1_555 D N2 G 1 F G 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2EC0 _atom_sites.fract_transf_matrix[1][1] 0.010454 _atom_sites.fract_transf_matrix[1][2] 0.006036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 1990 1990 MG MG . H 5 PPV A 1 930 930 PPV PPV . I 4 MG D 1 3990 3990 MG MG . J 5 PPV D 1 2930 2930 PPV PPV . K 6 HOH B 1 958 958 HOH HOH . K 6 HOH B 2 990 990 HOH HOH . K 6 HOH B 3 1013 1013 HOH HOH . L 6 HOH C 1 953 953 HOH HOH . L 6 HOH C 2 980 980 HOH HOH . M 6 HOH E 1 2000 2000 HOH HOH . M 6 HOH E 2 2007 2007 HOH HOH . M 6 HOH E 3 2958 2958 HOH HOH . M 6 HOH E 4 2984 2984 HOH HOH . N 6 HOH F 1 2959 2959 HOH HOH . O 6 HOH A 1 950 950 HOH HOH . O 6 HOH A 2 951 951 HOH HOH . O 6 HOH A 3 952 952 HOH HOH . O 6 HOH A 4 954 954 HOH HOH . O 6 HOH A 5 955 955 HOH HOH . O 6 HOH A 6 956 956 HOH HOH . O 6 HOH A 7 957 957 HOH HOH . O 6 HOH A 8 961 961 HOH HOH . O 6 HOH A 9 962 962 HOH HOH . O 6 HOH A 10 963 963 HOH HOH . O 6 HOH A 11 964 964 HOH HOH . O 6 HOH A 12 966 966 HOH HOH . O 6 HOH A 13 967 967 HOH HOH . O 6 HOH A 14 970 970 HOH HOH . O 6 HOH A 15 971 971 HOH HOH . O 6 HOH A 16 973 973 HOH HOH . O 6 HOH A 17 974 974 HOH HOH . O 6 HOH A 18 978 978 HOH HOH . O 6 HOH A 19 979 979 HOH HOH . O 6 HOH A 20 981 981 HOH HOH . O 6 HOH A 21 982 982 HOH HOH . O 6 HOH A 22 983 983 HOH HOH . O 6 HOH A 23 988 988 HOH HOH . O 6 HOH A 24 992 992 HOH HOH . O 6 HOH A 25 995 995 HOH HOH . O 6 HOH A 26 996 996 HOH HOH . O 6 HOH A 27 999 999 HOH HOH . O 6 HOH A 28 1000 1000 HOH HOH . O 6 HOH A 29 1001 1001 HOH HOH . O 6 HOH A 30 1002 1002 HOH HOH . O 6 HOH A 31 1006 1006 HOH HOH . O 6 HOH A 32 1008 1008 HOH HOH . O 6 HOH A 33 1009 1009 HOH HOH . O 6 HOH A 34 1010 1010 HOH HOH . O 6 HOH A 35 1011 1011 HOH HOH . O 6 HOH A 36 1012 1012 HOH HOH . O 6 HOH A 37 1014 1014 HOH HOH . O 6 HOH A 38 1016 1016 HOH HOH . O 6 HOH A 39 1018 1018 HOH HOH . O 6 HOH A 40 1020 1020 HOH HOH . O 6 HOH A 41 1021 1021 HOH HOH . O 6 HOH A 42 1022 1022 HOH HOH . O 6 HOH A 43 1023 1023 HOH HOH . O 6 HOH A 44 1024 1024 HOH HOH . O 6 HOH A 45 1026 1026 HOH HOH . O 6 HOH A 46 1027 1027 HOH HOH . O 6 HOH A 47 1028 1028 HOH HOH . O 6 HOH A 48 1030 1030 HOH HOH . O 6 HOH A 49 1031 1031 HOH HOH . P 6 HOH D 1 2001 2001 HOH HOH . P 6 HOH D 2 2002 2002 HOH HOH . P 6 HOH D 3 2004 2004 HOH HOH . P 6 HOH D 4 2005 2005 HOH HOH . P 6 HOH D 5 2006 2006 HOH HOH . P 6 HOH D 6 2008 2008 HOH HOH . P 6 HOH D 7 2009 2009 HOH HOH . P 6 HOH D 8 2010 2010 HOH HOH . P 6 HOH D 9 2012 2012 HOH HOH . P 6 HOH D 10 2014 2014 HOH HOH . P 6 HOH D 11 2016 2016 HOH HOH . P 6 HOH D 12 2017 2017 HOH HOH . P 6 HOH D 13 2018 2018 HOH HOH . P 6 HOH D 14 2019 2019 HOH HOH . P 6 HOH D 15 2020 2020 HOH HOH . P 6 HOH D 16 2022 2022 HOH HOH . P 6 HOH D 17 2023 2023 HOH HOH . P 6 HOH D 18 2025 2025 HOH HOH . P 6 HOH D 19 2950 2950 HOH HOH . P 6 HOH D 20 2951 2951 HOH HOH . P 6 HOH D 21 2952 2952 HOH HOH . P 6 HOH D 22 2953 2953 HOH HOH . P 6 HOH D 23 2954 2954 HOH HOH . P 6 HOH D 24 2955 2955 HOH HOH . P 6 HOH D 25 2956 2956 HOH HOH . P 6 HOH D 26 2957 2957 HOH HOH . P 6 HOH D 27 2961 2961 HOH HOH . P 6 HOH D 28 2963 2963 HOH HOH . P 6 HOH D 29 2964 2964 HOH HOH . P 6 HOH D 30 2965 2965 HOH HOH . P 6 HOH D 31 2966 2966 HOH HOH . P 6 HOH D 32 2967 2967 HOH HOH . P 6 HOH D 33 2968 2968 HOH HOH . P 6 HOH D 34 2969 2969 HOH HOH . P 6 HOH D 35 2970 2970 HOH HOH . P 6 HOH D 36 2971 2971 HOH HOH . P 6 HOH D 37 2973 2973 HOH HOH . P 6 HOH D 38 2974 2974 HOH HOH . P 6 HOH D 39 2976 2976 HOH HOH . P 6 HOH D 40 2979 2979 HOH HOH . P 6 HOH D 41 2981 2981 HOH HOH . P 6 HOH D 42 2982 2982 HOH HOH . P 6 HOH D 43 2983 2983 HOH HOH . P 6 HOH D 44 2985 2985 HOH HOH . P 6 HOH D 45 2987 2987 HOH HOH . P 6 HOH D 46 2988 2988 HOH HOH . P 6 HOH D 47 2989 2989 HOH HOH . P 6 HOH D 48 2990 2990 HOH HOH . P 6 HOH D 49 2991 2991 HOH HOH . P 6 HOH D 50 2992 2992 HOH HOH . P 6 HOH D 51 2993 2993 HOH HOH . P 6 HOH D 52 2994 2994 HOH HOH . P 6 HOH D 53 2995 2995 HOH HOH . P 6 HOH D 54 2997 2997 HOH HOH . P 6 HOH D 55 2998 2998 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 10.667 _atom_site.Cartn_y 39.498 _atom_site.Cartn_z 183.516 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 3990 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #