data_2ECK # _model_server_result.job_id EALp6-ZJrnPaXcEeEG4MXw _model_server_result.datetime_utc '2024-12-21 16:21:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":215}' # _entry.id 2ECK # _exptl.entry_id 2ECK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ECK _cell.length_a 73.5 _cell.length_b 84.8 _cell.length_c 80.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ECK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 2ECK _atom_sites.fract_transf_matrix[1][1] 0.013605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 215 215 AMP AMP . D 3 ADP A 1 216 216 ADP ADP . E 2 AMP B 1 215 215 AMP AMP . F 3 ADP B 1 216 216 ADP ADP . G 4 HOH A 1 217 1 HOH HOH . G 4 HOH A 2 218 2 HOH HOH . G 4 HOH A 3 219 4 HOH HOH . G 4 HOH A 4 220 5 HOH HOH . G 4 HOH A 5 221 6 HOH HOH . G 4 HOH A 6 222 8 HOH HOH . G 4 HOH A 7 223 11 HOH HOH . G 4 HOH A 8 224 12 HOH HOH . G 4 HOH A 9 225 14 HOH HOH . G 4 HOH A 10 226 15 HOH HOH . G 4 HOH A 11 227 16 HOH HOH . G 4 HOH A 12 228 20 HOH HOH . G 4 HOH A 13 229 22 HOH HOH . G 4 HOH A 14 230 23 HOH HOH . G 4 HOH A 15 231 25 HOH HOH . G 4 HOH A 16 232 26 HOH HOH . G 4 HOH A 17 233 27 HOH HOH . G 4 HOH A 18 234 28 HOH HOH . G 4 HOH A 19 235 29 HOH HOH . G 4 HOH A 20 236 30 HOH HOH . G 4 HOH A 21 237 32 HOH HOH . G 4 HOH A 22 238 34 HOH HOH . G 4 HOH A 23 239 35 HOH HOH . G 4 HOH A 24 240 36 HOH HOH . G 4 HOH A 25 241 39 HOH HOH . G 4 HOH A 26 242 40 HOH HOH . G 4 HOH A 27 243 41 HOH HOH . G 4 HOH A 28 244 42 HOH HOH . G 4 HOH A 29 245 43 HOH HOH . G 4 HOH A 30 246 44 HOH HOH . G 4 HOH A 31 247 45 HOH HOH . G 4 HOH A 32 248 46 HOH HOH . G 4 HOH A 33 249 47 HOH HOH . G 4 HOH A 34 250 48 HOH HOH . G 4 HOH A 35 251 49 HOH HOH . G 4 HOH A 36 252 50 HOH HOH . G 4 HOH A 37 253 53 HOH HOH . G 4 HOH A 38 254 54 HOH HOH . G 4 HOH A 39 255 55 HOH HOH . G 4 HOH A 40 256 56 HOH HOH . G 4 HOH A 41 257 57 HOH HOH . G 4 HOH A 42 258 58 HOH HOH . H 4 HOH B 1 217 3 HOH HOH . H 4 HOH B 2 218 7 HOH HOH . H 4 HOH B 3 219 9 HOH HOH . H 4 HOH B 4 220 10 HOH HOH . H 4 HOH B 5 221 13 HOH HOH . H 4 HOH B 6 222 17 HOH HOH . H 4 HOH B 7 223 18 HOH HOH . H 4 HOH B 8 224 19 HOH HOH . H 4 HOH B 9 225 21 HOH HOH . H 4 HOH B 10 226 24 HOH HOH . H 4 HOH B 11 227 31 HOH HOH . H 4 HOH B 12 228 33 HOH HOH . H 4 HOH B 13 229 37 HOH HOH . H 4 HOH B 14 230 38 HOH HOH . H 4 HOH B 15 231 51 HOH HOH . H 4 HOH B 16 232 52 HOH HOH . H 4 HOH B 17 233 59 HOH HOH . H 4 HOH B 18 234 60 HOH HOH . H 4 HOH B 19 235 61 HOH HOH . H 4 HOH B 20 236 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 47.548 65.607 36.469 1 12.4 ? P AMP 215 A 1 HETATM 2 O O1P AMP . . . C 2 48.807 65.987 37.19 1 24.1 ? O1P AMP 215 A 1 HETATM 3 O O2P AMP . . . C 2 47.294 66.384 35.242 1 8.8 ? O2P AMP 215 A 1 HETATM 4 O O3P AMP . . . C 2 47.29 64.156 36.275 1 0.4 ? O3P AMP 215 A 1 HETATM 5 O O5' AMP . . . C 2 46.381 66.002 37.491 1 6.5 ? O5' AMP 215 A 1 HETATM 6 C C5' AMP . . . C 2 45.972 67.378 37.571 1 6.5 ? C5' AMP 215 A 1 HETATM 7 C C4' AMP . . . C 2 44.682 67.546 38.338 1 6.4 ? C4' AMP 215 A 1 HETATM 8 O O4' AMP . . . C 2 43.652 66.656 37.906 1 0.7 ? O4' AMP 215 A 1 HETATM 9 C C3' AMP . . . C 2 44.946 67.224 39.796 1 14.7 ? C3' AMP 215 A 1 HETATM 10 O O3' AMP . . . C 2 45.533 68.42 40.421 1 23.6 ? O3' AMP 215 A 1 HETATM 11 C C2' AMP . . . C 2 43.569 66.785 40.272 1 5.8 ? C2' AMP 215 A 1 HETATM 12 O O2' AMP . . . C 2 42.843 67.928 40.767 1 5.3 ? O2' AMP 215 A 1 HETATM 13 C C1' AMP . . . C 2 42.849 66.316 39.024 1 1.8 ? C1' AMP 215 A 1 HETATM 14 N N9 AMP . . . C 2 42.781 64.911 38.849 1 0.4 ? N9 AMP 215 A 1 HETATM 15 C C8 AMP . . . C 2 43.306 64.243 37.827 1 0.4 ? C8 AMP 215 A 1 HETATM 16 N N7 AMP . . . C 2 43.133 62.919 37.962 1 0.4 ? N7 AMP 215 A 1 HETATM 17 C C5 AMP . . . C 2 42.483 62.83 39.094 1 0.4 ? C5 AMP 215 A 1 HETATM 18 C C6 AMP . . . C 2 42.073 61.636 39.608 1 1.2 ? C6 AMP 215 A 1 HETATM 19 N N6 AMP . . . C 2 42.315 60.512 38.931 1 0.4 ? N6 AMP 215 A 1 HETATM 20 N N1 AMP . . . C 2 41.43 61.696 40.8 1 4 ? N1 AMP 215 A 1 HETATM 21 C C2 AMP . . . C 2 41.219 62.852 41.393 1 9.6 ? C2 AMP 215 A 1 HETATM 22 N N3 AMP . . . C 2 41.638 64 40.845 1 11.7 ? N3 AMP 215 A 1 HETATM 23 C C4 AMP . . . C 2 42.273 64.035 39.686 1 0.4 ? C4 AMP 215 A 1 HETATM 24 H HO3' AMP . . . C 2 45.742 68.268 41.385 1 0 ? HO3' AMP 215 A 1 HETATM 25 H HO2' AMP . . . C 2 43.3 68.277 41.585 1 0 ? HO2' AMP 215 A 1 HETATM 26 H HN61 AMP . . . C 2 42.786 60.546 38.051 1 0 ? HN61 AMP 215 A 1 HETATM 27 H HN62 AMP . . . C 2 42.034 59.626 39.303 1 0 ? HN62 AMP 215 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #