data_2EEQ # _model_server_result.job_id -UCyx_s94Gm9KcEeIkIxpA _model_server_result.datetime_utc '2024-10-14 00:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eeq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2EEQ # _exptl.entry_id 2EEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EEQ _cell.length_a 104.697 _cell.length_b 104.697 _cell.length_c 136.615 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 B,F,G,H,I,J,K,M 3 1,2 A,C,D,E,L 3 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_466 y-1,x+1,-z+1 0 1 0 1 0 0 0 0 -1 -104.697 104.697 136.615 3 'crystal symmetry operation' 4_464 y-1/2,-x+3/2,z-1/4 0 1 0 -1 0 0 0 0 1 -52.3485 157.0455 -34.15375 4 'crystal symmetry operation' 5_556 -x+1/2,y+1/2,-z+5/4 -1 0 0 0 1 0 0 0 -1 52.3485 52.3485 170.76875 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 2EEQ _atom_sites.fract_transf_matrix[1][1] 0.009551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 303 303 SO4 SO4 . D 3 SAH A 1 301 301 SAH SAH . E 4 GOL A 1 309 309 GOL GOL . F 2 SO4 B 1 302 302 SO4 SO4 . G 2 SO4 B 1 304 304 SO4 SO4 . H 2 SO4 B 1 305 305 SO4 SO4 . I 2 SO4 B 1 306 306 SO4 SO4 . J 4 GOL B 1 307 307 GOL GOL . K 4 GOL B 1 308 308 GOL GOL . L 5 HOH A 1 310 2 HOH HOH . L 5 HOH A 2 311 3 HOH HOH . L 5 HOH A 3 312 5 HOH HOH . L 5 HOH A 4 313 6 HOH HOH . L 5 HOH A 5 314 8 HOH HOH . L 5 HOH A 6 315 10 HOH HOH . L 5 HOH A 7 316 12 HOH HOH . L 5 HOH A 8 317 17 HOH HOH . L 5 HOH A 9 318 18 HOH HOH . L 5 HOH A 10 319 21 HOH HOH . L 5 HOH A 11 320 22 HOH HOH . L 5 HOH A 12 321 23 HOH HOH . L 5 HOH A 13 322 25 HOH HOH . L 5 HOH A 14 323 26 HOH HOH . L 5 HOH A 15 324 29 HOH HOH . L 5 HOH A 16 325 31 HOH HOH . L 5 HOH A 17 326 36 HOH HOH . L 5 HOH A 18 327 38 HOH HOH . L 5 HOH A 19 328 41 HOH HOH . L 5 HOH A 20 329 42 HOH HOH . L 5 HOH A 21 330 44 HOH HOH . L 5 HOH A 22 331 49 HOH HOH . L 5 HOH A 23 332 50 HOH HOH . L 5 HOH A 24 333 54 HOH HOH . L 5 HOH A 25 334 55 HOH HOH . L 5 HOH A 26 335 56 HOH HOH . L 5 HOH A 27 336 59 HOH HOH . L 5 HOH A 28 337 61 HOH HOH . L 5 HOH A 29 338 62 HOH HOH . L 5 HOH A 30 339 64 HOH HOH . L 5 HOH A 31 340 66 HOH HOH . L 5 HOH A 32 341 67 HOH HOH . L 5 HOH A 33 342 69 HOH HOH . L 5 HOH A 34 343 70 HOH HOH . L 5 HOH A 35 344 71 HOH HOH . L 5 HOH A 36 345 72 HOH HOH . L 5 HOH A 37 346 73 HOH HOH . L 5 HOH A 38 347 76 HOH HOH . L 5 HOH A 39 348 78 HOH HOH . L 5 HOH A 40 349 80 HOH HOH . L 5 HOH A 41 350 84 HOH HOH . L 5 HOH A 42 351 85 HOH HOH . L 5 HOH A 43 352 89 HOH HOH . L 5 HOH A 44 353 90 HOH HOH . L 5 HOH A 45 354 91 HOH HOH . L 5 HOH A 46 355 92 HOH HOH . L 5 HOH A 47 356 95 HOH HOH . L 5 HOH A 48 357 96 HOH HOH . L 5 HOH A 49 358 99 HOH HOH . L 5 HOH A 50 359 100 HOH HOH . L 5 HOH A 51 360 101 HOH HOH . L 5 HOH A 52 361 104 HOH HOH . L 5 HOH A 53 362 105 HOH HOH . L 5 HOH A 54 363 106 HOH HOH . L 5 HOH A 55 364 109 HOH HOH . L 5 HOH A 56 365 111 HOH HOH . L 5 HOH A 57 366 112 HOH HOH . L 5 HOH A 58 367 121 HOH HOH . L 5 HOH A 59 368 122 HOH HOH . L 5 HOH A 60 369 124 HOH HOH . L 5 HOH A 61 370 128 HOH HOH . L 5 HOH A 62 371 130 HOH HOH . L 5 HOH A 63 372 137 HOH HOH . L 5 HOH A 64 373 138 HOH HOH . L 5 HOH A 65 374 139 HOH HOH . L 5 HOH A 66 375 141 HOH HOH . L 5 HOH A 67 376 145 HOH HOH . L 5 HOH A 68 377 147 HOH HOH . L 5 HOH A 69 378 149 HOH HOH . L 5 HOH A 70 379 150 HOH HOH . L 5 HOH A 71 380 151 HOH HOH . L 5 HOH A 72 381 152 HOH HOH . L 5 HOH A 73 382 154 HOH HOH . L 5 HOH A 74 383 155 HOH HOH . L 5 HOH A 75 384 156 HOH HOH . L 5 HOH A 76 385 158 HOH HOH . L 5 HOH A 77 386 159 HOH HOH . L 5 HOH A 78 387 162 HOH HOH . L 5 HOH A 79 388 163 HOH HOH . L 5 HOH A 80 389 164 HOH HOH . L 5 HOH A 81 390 165 HOH HOH . L 5 HOH A 82 391 166 HOH HOH . L 5 HOH A 83 392 168 HOH HOH . L 5 HOH A 84 393 169 HOH HOH . L 5 HOH A 85 394 171 HOH HOH . L 5 HOH A 86 395 172 HOH HOH . L 5 HOH A 87 396 173 HOH HOH . L 5 HOH A 88 397 176 HOH HOH . L 5 HOH A 89 398 177 HOH HOH . L 5 HOH A 90 399 178 HOH HOH . L 5 HOH A 91 400 179 HOH HOH . L 5 HOH A 92 401 180 HOH HOH . L 5 HOH A 93 402 181 HOH HOH . L 5 HOH A 94 403 182 HOH HOH . L 5 HOH A 95 404 183 HOH HOH . L 5 HOH A 96 405 184 HOH HOH . L 5 HOH A 97 406 187 HOH HOH . L 5 HOH A 98 407 188 HOH HOH . L 5 HOH A 99 408 191 HOH HOH . L 5 HOH A 100 409 194 HOH HOH . L 5 HOH A 101 410 195 HOH HOH . L 5 HOH A 102 411 196 HOH HOH . L 5 HOH A 103 412 199 HOH HOH . L 5 HOH A 104 413 201 HOH HOH . L 5 HOH A 105 414 202 HOH HOH . L 5 HOH A 106 415 203 HOH HOH . L 5 HOH A 107 416 204 HOH HOH . L 5 HOH A 108 417 207 HOH HOH . L 5 HOH A 109 418 217 HOH HOH . L 5 HOH A 110 419 218 HOH HOH . M 5 HOH B 1 309 4 HOH HOH . M 5 HOH B 2 310 7 HOH HOH . M 5 HOH B 3 311 9 HOH HOH . M 5 HOH B 4 312 11 HOH HOH . M 5 HOH B 5 313 13 HOH HOH . M 5 HOH B 6 314 14 HOH HOH . M 5 HOH B 7 315 15 HOH HOH . M 5 HOH B 8 316 16 HOH HOH . M 5 HOH B 9 317 19 HOH HOH . M 5 HOH B 10 318 20 HOH HOH . M 5 HOH B 11 319 24 HOH HOH . M 5 HOH B 12 320 28 HOH HOH . M 5 HOH B 13 321 30 HOH HOH . M 5 HOH B 14 322 32 HOH HOH . M 5 HOH B 15 323 33 HOH HOH . M 5 HOH B 16 324 34 HOH HOH . M 5 HOH B 17 325 35 HOH HOH . M 5 HOH B 18 326 37 HOH HOH . M 5 HOH B 19 327 40 HOH HOH . M 5 HOH B 20 328 45 HOH HOH . M 5 HOH B 21 329 46 HOH HOH . M 5 HOH B 22 330 47 HOH HOH . M 5 HOH B 23 331 48 HOH HOH . M 5 HOH B 24 332 51 HOH HOH . M 5 HOH B 25 333 53 HOH HOH . M 5 HOH B 26 334 57 HOH HOH . M 5 HOH B 27 335 58 HOH HOH . M 5 HOH B 28 336 63 HOH HOH . M 5 HOH B 29 337 65 HOH HOH . M 5 HOH B 30 338 68 HOH HOH . M 5 HOH B 31 339 74 HOH HOH . M 5 HOH B 32 340 75 HOH HOH . M 5 HOH B 33 341 77 HOH HOH . M 5 HOH B 34 342 79 HOH HOH . M 5 HOH B 35 343 81 HOH HOH . M 5 HOH B 36 344 82 HOH HOH . M 5 HOH B 37 345 83 HOH HOH . M 5 HOH B 38 346 86 HOH HOH . M 5 HOH B 39 347 87 HOH HOH . M 5 HOH B 40 348 88 HOH HOH . M 5 HOH B 41 349 93 HOH HOH . M 5 HOH B 42 350 94 HOH HOH . M 5 HOH B 43 351 97 HOH HOH . M 5 HOH B 44 352 98 HOH HOH . M 5 HOH B 45 353 102 HOH HOH . M 5 HOH B 46 354 103 HOH HOH . M 5 HOH B 47 355 107 HOH HOH . M 5 HOH B 48 356 108 HOH HOH . M 5 HOH B 49 357 110 HOH HOH . M 5 HOH B 50 358 114 HOH HOH . M 5 HOH B 51 359 116 HOH HOH . M 5 HOH B 52 360 117 HOH HOH . M 5 HOH B 53 361 119 HOH HOH . M 5 HOH B 54 362 120 HOH HOH . M 5 HOH B 55 363 123 HOH HOH . M 5 HOH B 56 364 125 HOH HOH . M 5 HOH B 57 365 126 HOH HOH . M 5 HOH B 58 366 132 HOH HOH . M 5 HOH B 59 367 133 HOH HOH . M 5 HOH B 60 368 134 HOH HOH . M 5 HOH B 61 369 136 HOH HOH . M 5 HOH B 62 370 140 HOH HOH . M 5 HOH B 63 371 142 HOH HOH . M 5 HOH B 64 372 143 HOH HOH . M 5 HOH B 65 373 144 HOH HOH . M 5 HOH B 66 374 153 HOH HOH . M 5 HOH B 67 375 160 HOH HOH . M 5 HOH B 68 376 161 HOH HOH . M 5 HOH B 69 377 167 HOH HOH . M 5 HOH B 70 378 170 HOH HOH . M 5 HOH B 71 379 174 HOH HOH . M 5 HOH B 72 380 175 HOH HOH . M 5 HOH B 73 381 185 HOH HOH . M 5 HOH B 74 382 186 HOH HOH . M 5 HOH B 75 383 189 HOH HOH . M 5 HOH B 76 384 190 HOH HOH . M 5 HOH B 77 385 192 HOH HOH . M 5 HOH B 78 386 193 HOH HOH . M 5 HOH B 79 387 197 HOH HOH . M 5 HOH B 80 388 198 HOH HOH . M 5 HOH B 81 389 200 HOH HOH . M 5 HOH B 82 390 205 HOH HOH . M 5 HOH B 83 391 206 HOH HOH . M 5 HOH B 84 392 208 HOH HOH . M 5 HOH B 85 393 209 HOH HOH . M 5 HOH B 86 394 210 HOH HOH . M 5 HOH B 87 395 211 HOH HOH . M 5 HOH B 88 396 212 HOH HOH . M 5 HOH B 89 397 213 HOH HOH . M 5 HOH B 90 398 214 HOH HOH . M 5 HOH B 91 399 215 HOH HOH . M 5 HOH B 92 400 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 3 33.279 92.371 65.501 1 39.32 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . D 3 31.862 91.825 65.388 1 38.65 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . D 3 31.293 91.111 66.579 1 39.1 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . D 3 32.022 89.905 67.148 1 39.15 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . D 3 30.886 89.1 68.356 1 41.76 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . D 3 30.942 93.05 64.972 1 39.22 ? C SAH 301 A 1 HETATM 7 O O SAH . . . D 3 31.458 94.174 64.825 1 38.27 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . D 3 29.688 92.791 64.804 1 39.88 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . D 3 29.932 88.084 67.308 1 40.6 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . D 3 28.491 87.899 67.937 1 41.14 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . D 3 27.794 89.153 67.776 1 39.11 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . D 3 27.647 86.843 67.301 1 42.14 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . D 3 27.791 85.603 67.988 1 43.68 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . D 3 26.226 87.459 67.379 1 42.03 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . D 3 25.594 87.166 68.622 1 41.97 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . D 3 26.45 88.957 67.149 1 40.2 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . D 3 26.436 89.347 65.848 1 40.15 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . D 3 27.404 89.649 64.895 1 40.43 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . D 3 26.942 90.004 63.728 1 40.12 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . D 3 25.526 89.948 63.876 1 39.23 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . D 3 24.445 90.232 62.952 1 39.97 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . D 3 24.62 90.633 61.682 1 41.14 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . D 3 23.181 90.058 63.473 1 37.54 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . D 3 22.947 89.654 64.751 1 35.9 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . D 3 23.947 89.381 65.656 1 37.57 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . D 3 25.202 89.548 65.154 1 38.08 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 26 #