data_2EFJ # _model_server_result.job_id u3jrnLQqjkDPiJadnS822Q _model_server_result.datetime_utc '2025-02-26 03:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2efj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2EFJ # _exptl.entry_id 2EFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.164 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THEOBROMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EFJ _cell.length_a 50.16 _cell.length_b 105.63 _cell.length_c 140.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 70.475 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H8 N4 O2' _chem_comp.formula_weight 180.164 _chem_comp.id 37T _chem_comp.mon_nstd_flag . _chem_comp.name THEOBROMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIMETHYLXANTHINE;3,7-DIMETHYLPURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 37T doub 1 n n C6 N1 37T sing 2 n n C6 C5 37T sing 3 n n N1 C2 37T sing 4 n n N1 HN1 37T sing 5 n n C5 C4 37T doub 6 n n C5 N7 37T sing 7 n n N7 C8 37T sing 8 n n N7 C13 37T sing 9 n n C13 H131 37T sing 10 n n C13 H132 37T sing 11 n n C13 H133 37T sing 12 n n C8 N9 37T doub 13 n n C8 H8 37T sing 14 n n N9 C4 37T sing 15 n n C4 N3 37T sing 16 n n N3 C12 37T sing 17 n n N3 C2 37T sing 18 n n C12 H121 37T sing 19 n n C12 H122 37T sing 20 n n C12 H123 37T sing 21 n n C2 O2 37T doub 22 n n # _atom_sites.entry_id 2EFJ _atom_sites.fract_transf_matrix[1][1] 0.019936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 501 501 SAH SAH . C 3 37T A 1 502 502 37T 37T . D 4 HOH A 1 503 1 HOH HOH . D 4 HOH A 2 504 2 HOH HOH . D 4 HOH A 3 505 3 HOH HOH . D 4 HOH A 4 506 4 HOH HOH . D 4 HOH A 5 507 5 HOH HOH . D 4 HOH A 6 508 6 HOH HOH . D 4 HOH A 7 509 7 HOH HOH . D 4 HOH A 8 510 8 HOH HOH . D 4 HOH A 9 511 9 HOH HOH . D 4 HOH A 10 512 10 HOH HOH . D 4 HOH A 11 513 11 HOH HOH . D 4 HOH A 12 514 12 HOH HOH . D 4 HOH A 13 515 13 HOH HOH . D 4 HOH A 14 516 14 HOH HOH . D 4 HOH A 15 517 15 HOH HOH . D 4 HOH A 16 518 16 HOH HOH . D 4 HOH A 17 519 17 HOH HOH . D 4 HOH A 18 520 18 HOH HOH . D 4 HOH A 19 521 19 HOH HOH . D 4 HOH A 20 522 20 HOH HOH . D 4 HOH A 21 523 21 HOH HOH . D 4 HOH A 22 524 22 HOH HOH . D 4 HOH A 23 525 23 HOH HOH . D 4 HOH A 24 526 24 HOH HOH . D 4 HOH A 25 527 25 HOH HOH . D 4 HOH A 26 528 26 HOH HOH . D 4 HOH A 27 529 27 HOH HOH . D 4 HOH A 28 530 28 HOH HOH . D 4 HOH A 29 531 29 HOH HOH . D 4 HOH A 30 532 30 HOH HOH . D 4 HOH A 31 533 31 HOH HOH . D 4 HOH A 32 534 32 HOH HOH . D 4 HOH A 33 535 33 HOH HOH . D 4 HOH A 34 536 34 HOH HOH . D 4 HOH A 35 537 35 HOH HOH . D 4 HOH A 36 538 36 HOH HOH . D 4 HOH A 37 539 37 HOH HOH . D 4 HOH A 38 540 38 HOH HOH . D 4 HOH A 39 541 39 HOH HOH . D 4 HOH A 40 542 40 HOH HOH . D 4 HOH A 41 543 41 HOH HOH . D 4 HOH A 42 544 42 HOH HOH . D 4 HOH A 43 545 43 HOH HOH . D 4 HOH A 44 546 44 HOH HOH . D 4 HOH A 45 547 45 HOH HOH . D 4 HOH A 46 548 46 HOH HOH . D 4 HOH A 47 549 47 HOH HOH . D 4 HOH A 48 550 48 HOH HOH . D 4 HOH A 49 551 49 HOH HOH . D 4 HOH A 50 552 50 HOH HOH . D 4 HOH A 51 553 51 HOH HOH . D 4 HOH A 52 554 52 HOH HOH . D 4 HOH A 53 555 53 HOH HOH . D 4 HOH A 54 556 54 HOH HOH . D 4 HOH A 55 557 55 HOH HOH . D 4 HOH A 56 558 56 HOH HOH . D 4 HOH A 57 559 57 HOH HOH . D 4 HOH A 58 560 58 HOH HOH . D 4 HOH A 59 561 59 HOH HOH . D 4 HOH A 60 562 60 HOH HOH . D 4 HOH A 61 563 61 HOH HOH . D 4 HOH A 62 564 62 HOH HOH . D 4 HOH A 63 565 63 HOH HOH . D 4 HOH A 64 566 64 HOH HOH . D 4 HOH A 65 567 65 HOH HOH . D 4 HOH A 66 568 66 HOH HOH . D 4 HOH A 67 569 67 HOH HOH . D 4 HOH A 68 570 68 HOH HOH . D 4 HOH A 69 571 69 HOH HOH . D 4 HOH A 70 572 70 HOH HOH . D 4 HOH A 71 573 71 HOH HOH . D 4 HOH A 72 574 72 HOH HOH . D 4 HOH A 73 575 73 HOH HOH . D 4 HOH A 74 576 74 HOH HOH . D 4 HOH A 75 577 75 HOH HOH . D 4 HOH A 76 578 76 HOH HOH . D 4 HOH A 77 579 77 HOH HOH . D 4 HOH A 78 580 78 HOH HOH . D 4 HOH A 79 581 79 HOH HOH . D 4 HOH A 80 582 80 HOH HOH . D 4 HOH A 81 583 81 HOH HOH . D 4 HOH A 82 584 82 HOH HOH . D 4 HOH A 83 585 83 HOH HOH . D 4 HOH A 84 586 84 HOH HOH . D 4 HOH A 85 587 85 HOH HOH . D 4 HOH A 86 588 86 HOH HOH . D 4 HOH A 87 589 87 HOH HOH . D 4 HOH A 88 590 88 HOH HOH . D 4 HOH A 89 591 89 HOH HOH . D 4 HOH A 90 592 90 HOH HOH . D 4 HOH A 91 593 91 HOH HOH . D 4 HOH A 92 594 92 HOH HOH . D 4 HOH A 93 595 93 HOH HOH . D 4 HOH A 94 596 94 HOH HOH . D 4 HOH A 95 597 95 HOH HOH . D 4 HOH A 96 598 96 HOH HOH . D 4 HOH A 97 599 97 HOH HOH . D 4 HOH A 98 600 98 HOH HOH . D 4 HOH A 99 601 99 HOH HOH . D 4 HOH A 100 602 100 HOH HOH . D 4 HOH A 101 603 101 HOH HOH . D 4 HOH A 102 604 102 HOH HOH . D 4 HOH A 103 605 103 HOH HOH . D 4 HOH A 104 606 104 HOH HOH . D 4 HOH A 105 607 105 HOH HOH . D 4 HOH A 106 608 106 HOH HOH . D 4 HOH A 107 609 107 HOH HOH . D 4 HOH A 108 610 108 HOH HOH . D 4 HOH A 109 611 109 HOH HOH . D 4 HOH A 110 612 110 HOH HOH . D 4 HOH A 111 613 111 HOH HOH . D 4 HOH A 112 614 112 HOH HOH . D 4 HOH A 113 615 113 HOH HOH . D 4 HOH A 114 616 114 HOH HOH . D 4 HOH A 115 617 115 HOH HOH . D 4 HOH A 116 618 116 HOH HOH . D 4 HOH A 117 619 117 HOH HOH . D 4 HOH A 118 620 118 HOH HOH . D 4 HOH A 119 621 119 HOH HOH . D 4 HOH A 120 622 120 HOH HOH . D 4 HOH A 121 623 121 HOH HOH . D 4 HOH A 122 624 122 HOH HOH . D 4 HOH A 123 625 123 HOH HOH . D 4 HOH A 124 626 124 HOH HOH . D 4 HOH A 125 627 125 HOH HOH . D 4 HOH A 126 628 126 HOH HOH . D 4 HOH A 127 629 127 HOH HOH . D 4 HOH A 128 630 128 HOH HOH . D 4 HOH A 129 631 129 HOH HOH . D 4 HOH A 130 632 130 HOH HOH . D 4 HOH A 131 633 131 HOH HOH . D 4 HOH A 132 634 132 HOH HOH . D 4 HOH A 133 635 133 HOH HOH . D 4 HOH A 134 636 134 HOH HOH . D 4 HOH A 135 637 135 HOH HOH . D 4 HOH A 136 638 136 HOH HOH . D 4 HOH A 137 639 137 HOH HOH . D 4 HOH A 138 640 138 HOH HOH . D 4 HOH A 139 641 139 HOH HOH . D 4 HOH A 140 642 140 HOH HOH . D 4 HOH A 141 643 141 HOH HOH . D 4 HOH A 142 644 142 HOH HOH . D 4 HOH A 143 645 143 HOH HOH . D 4 HOH A 144 646 144 HOH HOH . D 4 HOH A 145 647 145 HOH HOH . D 4 HOH A 146 648 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 37T . A . C 3 7.984 21.918 59.473 0.33 24.9 ? O6 37T 502 A 1 HETATM 2 O O6 37T . B . C 3 3.836 22.513 55.693 0.33 21.99 ? O6 37T 502 A 1 HETATM 3 C C6 37T . A . C 3 7.454 22.194 58.379 0.33 26.32 ? C6 37T 502 A 1 HETATM 4 C C6 37T . B . C 3 5.049 22.531 55.971 0.33 21.97 ? C6 37T 502 A 1 HETATM 5 N N1 37T . A . C 3 8.193 22.637 57.328 0.33 25.65 ? N1 37T 502 A 1 HETATM 6 N N1 37T . B . C 3 5.955 22.95 55.047 0.33 21.58 ? N1 37T 502 A 1 HETATM 7 C C5 37T . A . C 3 5.991 22.076 58.137 0.33 26.36 ? C5 37T 502 A 1 HETATM 8 C C5 37T . B . C 3 5.601 22.119 57.3 0.33 21.77 ? C5 37T 502 A 1 HETATM 9 N N7 37T . A . C 3 4.948 21.69 58.877 0.33 25.73 ? N7 37T 502 A 1 HETATM 10 N N7 37T . B . C 3 5.072 21.645 58.448 0.33 22.13 ? N7 37T 502 A 1 HETATM 11 C C13 37T . A . C 3 5.007 21.245 60.27 0.33 25.46 ? C13 37T 502 A 1 HETATM 12 C C13 37T . B . C 3 3.643 21.396 58.73 0.33 21.07 ? C13 37T 502 A 1 HETATM 13 C C8 37T . A . C 3 3.838 21.782 58.105 0.33 25.33 ? C8 37T 502 A 1 HETATM 14 C C8 37T . B . C 3 6.1 21.432 59.316 0.33 21.17 ? C8 37T 502 A 1 HETATM 15 N N9 37T . A . C 3 4.14 22.23 56.852 0.33 25.42 ? N9 37T 502 A 1 HETATM 16 N N9 37T . B . C 3 7.305 21.746 58.749 0.33 21.4 ? N9 37T 502 A 1 HETATM 17 C C4 37T . A . C 3 5.478 22.43 56.83 0.33 26.1 ? C4 37T 502 A 1 HETATM 18 C C4 37T . B . C 3 7.042 22.178 57.483 0.33 20.97 ? C4 37T 502 A 1 HETATM 19 N N3 37T . A . C 3 6.31 22.847 55.872 0.33 26.21 ? N3 37T 502 A 1 HETATM 20 N N3 37T . B . C 3 7.839 22.614 56.496 0.33 20.89 ? N3 37T 502 A 1 HETATM 21 C C12 37T . A . C 3 5.767 23.191 54.561 0.33 25.77 ? C12 37T 502 A 1 HETATM 22 C C12 37T . B . C 3 9.291 22.66 56.71 0.33 21.3 ? C12 37T 502 A 1 HETATM 23 C C2 37T . A . C 3 7.635 22.946 56.12 0.33 25.33 ? C2 37T 502 A 1 HETATM 24 C C2 37T . B . C 3 7.298 22.992 55.303 0.33 20.88 ? C2 37T 502 A 1 HETATM 25 O O2 37T . A . C 3 8.393 23.335 55.205 0.33 25.21 ? O2 37T 502 A 1 HETATM 26 O O2 37T . B . C 3 8.039 23.392 54.381 0.33 21.11 ? O2 37T 502 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 26 #