data_2EGD # _model_server_result.job_id JFrs_hnRw1XDX5bWfUWHdw _model_server_result.datetime_utc '2024-11-29 07:55:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2egd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 2EGD # _exptl.entry_id 2EGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EGD _cell.length_a 39.774 _cell.length_b 59.287 _cell.length_c 77.624 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 24 A ALA 24 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A O GLU 27 A GLU 27 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 A O ARG 29 A ARG 29 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 A O SER 32 A SER 32 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A OE1 GLU 37 A GLU 37 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A OE2 GLU 37 A GLU 37 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc7 A OD1 ASP 64 A ASP 64 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 A OD1 ASN 66 A ASN 66 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc9 A OD1 ASP 68 A ASP 68 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc10 A O GLU 70 A GLU 70 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 A OE1 GLU 75 A GLU 75 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc12 A OE2 GLU 75 A GLU 75 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 C CA CA . A CA 301 1_555 G O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc14 D CA CA . A CA 302 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc15 B O ALA 24 B ALA 24 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc16 B O GLU 27 B GLU 27 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc17 B O ARG 29 B ARG 29 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc18 B O SER 32 B SER 32 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc19 B OE1 GLU 37 B GLU 37 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc20 B OE2 GLU 37 B GLU 37 1_555 E CA CA . B CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc21 B OD1 ASP 64 B ASP 64 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc22 B OD1 ASN 66 B ASN 66 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc23 B OD1 ASP 68 B ASP 68 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc24 B O GLU 70 B GLU 70 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc25 B OE1 GLU 75 B GLU 75 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc26 B OE2 GLU 75 B GLU 75 1_555 F CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc27 E CA CA . B CA 303 1_555 H O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc28 F CA CA . B CA 304 1_555 H O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2EGD _atom_sites.fract_transf_matrix[1][1] 0.025142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 301 CA CA . D 2 CA A 1 302 302 CA CA . E 2 CA B 1 303 303 CA CA . F 2 CA B 1 304 304 CA CA . G 3 HOH A 1 303 3 HOH HOH . G 3 HOH A 2 304 5 HOH HOH . G 3 HOH A 3 305 11 HOH HOH . G 3 HOH A 4 306 16 HOH HOH . G 3 HOH A 5 307 18 HOH HOH . G 3 HOH A 6 308 48 HOH HOH . G 3 HOH A 7 309 65 HOH HOH . G 3 HOH A 8 310 66 HOH HOH . G 3 HOH A 9 311 67 HOH HOH . G 3 HOH A 10 312 68 HOH HOH . G 3 HOH A 11 313 70 HOH HOH . G 3 HOH A 12 314 72 HOH HOH . G 3 HOH A 13 315 73 HOH HOH . G 3 HOH A 14 316 74 HOH HOH . G 3 HOH A 15 317 77 HOH HOH . G 3 HOH A 16 318 78 HOH HOH . G 3 HOH A 17 319 79 HOH HOH . H 3 HOH B 1 305 2 HOH HOH . H 3 HOH B 2 306 8 HOH HOH . H 3 HOH B 3 307 19 HOH HOH . H 3 HOH B 4 308 25 HOH HOH . H 3 HOH B 5 309 28 HOH HOH . H 3 HOH B 6 310 29 HOH HOH . H 3 HOH B 7 311 35 HOH HOH . H 3 HOH B 8 312 37 HOH HOH . H 3 HOH B 9 313 38 HOH HOH . H 3 HOH B 10 314 39 HOH HOH . H 3 HOH B 11 315 40 HOH HOH . H 3 HOH B 12 316 41 HOH HOH . H 3 HOH B 13 317 45 HOH HOH . H 3 HOH B 14 318 49 HOH HOH . H 3 HOH B 15 319 50 HOH HOH . H 3 HOH B 16 320 57 HOH HOH . H 3 HOH B 17 321 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.574 _atom_site.Cartn_y 12.283 _atom_site.Cartn_z 2.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #