data_2EGK # _model_server_result.job_id bLmnC-3-SdAlNBAmJMh_fg _model_server_result.datetime_utc '2024-11-28 14:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2egk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":195}' # _entry.id 2EGK # _exptl.entry_id 2EGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EGK _cell.length_a 48.56 _cell.length_b 114.07 _cell.length_c 125.74 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 37 A MSE 130 1_555 A N VAL 38 A VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C GLU 36 B GLU 129 1_555 B N MSE 37 B MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C MSE 37 B MSE 130 1_555 B N VAL 38 B VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C GLU 36 C GLU 129 1_555 C N MSE 37 C MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 C C MSE 37 C MSE 130 1_555 C N VAL 38 C VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 D C MSE 37 D MSE 130 1_555 D N VAL 38 D VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 279 n n P O2 PO4 sing 280 n n P O3 PO4 sing 281 n n P O4 PO4 sing 282 n n # _atom_sites.entry_id 2EGK _atom_sites.fract_transf_matrix[1][1] 0.020593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 B 1 195 102 PO4 PO4 . F 2 PO4 C 1 195 101 PO4 PO4 . G 3 HOH A 1 3 3 HOH HOH . G 3 HOH A 2 6 6 HOH HOH . G 3 HOH A 3 14 14 HOH HOH . G 3 HOH A 4 26 26 HOH HOH . G 3 HOH A 5 30 30 HOH HOH . G 3 HOH A 6 36 36 HOH HOH . G 3 HOH A 7 39 39 HOH HOH . H 3 HOH B 1 4 4 HOH HOH . H 3 HOH B 2 8 8 HOH HOH . H 3 HOH B 3 9 9 HOH HOH . H 3 HOH B 4 10 10 HOH HOH . H 3 HOH B 5 12 12 HOH HOH . H 3 HOH B 6 13 13 HOH HOH . H 3 HOH B 7 15 15 HOH HOH . H 3 HOH B 8 17 17 HOH HOH . H 3 HOH B 9 20 20 HOH HOH . H 3 HOH B 10 22 22 HOH HOH . H 3 HOH B 11 29 29 HOH HOH . H 3 HOH B 12 31 31 HOH HOH . H 3 HOH B 13 32 32 HOH HOH . H 3 HOH B 14 33 33 HOH HOH . H 3 HOH B 15 34 34 HOH HOH . H 3 HOH B 16 40 40 HOH HOH . H 3 HOH B 17 43 43 HOH HOH . I 3 HOH C 1 1 1 HOH HOH . I 3 HOH C 2 2 2 HOH HOH . I 3 HOH C 3 7 7 HOH HOH . I 3 HOH C 4 11 11 HOH HOH . I 3 HOH C 5 18 18 HOH HOH . I 3 HOH C 6 19 19 HOH HOH . I 3 HOH C 7 21 21 HOH HOH . I 3 HOH C 8 23 23 HOH HOH . I 3 HOH C 9 25 25 HOH HOH . I 3 HOH C 10 28 28 HOH HOH . I 3 HOH C 11 35 35 HOH HOH . I 3 HOH C 12 38 38 HOH HOH . I 3 HOH C 13 41 41 HOH HOH . J 3 HOH D 1 5 5 HOH HOH . J 3 HOH D 2 16 16 HOH HOH . J 3 HOH D 3 24 24 HOH HOH . J 3 HOH D 4 27 27 HOH HOH . J 3 HOH D 5 37 37 HOH HOH . J 3 HOH D 6 42 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 2 33.473 92.865 -1.531 1 23.83 ? P PO4 195 B 1 HETATM 2 O O1 PO4 . . . E 2 33.158 92.429 -0.151 1 20.47 ? O1 PO4 195 B 1 HETATM 3 O O2 PO4 . . . E 2 34.899 92.578 -1.81 1 19.09 ? O2 PO4 195 B 1 HETATM 4 O O3 PO4 . . . E 2 33.213 94.324 -1.666 1 18.75 ? O3 PO4 195 B 1 HETATM 5 O O4 PO4 . . . E 2 32.624 92.122 -2.498 1 19.57 ? O4 PO4 195 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #