data_2EI4 # _model_server_result.job_id 4Fmf7LaZ8Xa1dUDzdcOBig _model_server_result.datetime_utc '2024-11-02 05:32:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ei4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":260}' # _entry.id 2EI4 # _exptl.entry_id 2EI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2EI4 _cell.length_a 98.16 _cell.length_b 98.16 _cell.length_c 56.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 98.16 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.08 85.009054 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 221 A LYS 221 1_555 C C15 RET . A RET 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 E O3 L2P . A L2P 280 1_555 B C1 GLC . A GLC 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 529 n n C1 C6 RET sing 530 n n C1 C16 RET sing 531 n n C1 C17 RET sing 532 n n C2 C3 RET sing 533 n n C2 H21 RET sing 534 n n C2 H22 RET sing 535 n n C3 C4 RET sing 536 n n C3 H31 RET sing 537 n n C3 H32 RET sing 538 n n C4 C5 RET sing 539 n n C4 H41 RET sing 540 n n C4 H42 RET sing 541 n n C5 C6 RET doub 542 n n C5 C18 RET sing 543 n n C6 C7 RET sing 544 n n C7 C8 RET doub 545 e n C7 H7 RET sing 546 n n C8 C9 RET sing 547 n n C8 H8 RET sing 548 n n C9 C10 RET doub 549 e n C9 C19 RET sing 550 n n C10 C11 RET sing 551 n n C10 H10 RET sing 552 n n C11 C12 RET doub 553 e n C11 H11 RET sing 554 n n C12 C13 RET sing 555 n n C12 H12 RET sing 556 n n C13 C14 RET doub 557 e n C13 C20 RET sing 558 n n C14 C15 RET sing 559 n n C14 H14 RET sing 560 n n C15 O1 RET doub 561 n n C15 H15 RET sing 562 n n C16 H161 RET sing 563 n n C16 H162 RET sing 564 n n C16 H163 RET sing 565 n n C17 H171 RET sing 566 n n C17 H172 RET sing 567 n n C17 H173 RET sing 568 n n C18 H181 RET sing 569 n n C18 H182 RET sing 570 n n C18 H183 RET sing 571 n n C19 H191 RET sing 572 n n C19 H192 RET sing 573 n n C19 H193 RET sing 574 n n C20 H201 RET sing 575 n n C20 H202 RET sing 576 n n C20 H203 RET sing 577 n n # _atom_sites.entry_id 2EI4 _atom_sites.fract_transf_matrix[1][1] 0.010187 _atom_sites.fract_transf_matrix[1][2] 0.005882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 281 281 GLC GLC . C 3 RET A 1 260 260 RET RET . D 4 22B A 1 270 270 22B 22B . E 5 L2P A 1 280 280 L2P L2P . F 6 HOH A 1 282 1501 HOH HOH . F 6 HOH A 2 283 1502 HOH HOH . F 6 HOH A 3 284 1503 HOH HOH . F 6 HOH A 4 285 1504 HOH HOH . F 6 HOH A 5 286 1505 HOH HOH . F 6 HOH A 6 287 1506 HOH HOH . F 6 HOH A 7 288 1507 HOH HOH . F 6 HOH A 8 289 1508 HOH HOH . F 6 HOH A 9 290 1509 HOH HOH . F 6 HOH A 10 291 1510 HOH HOH . F 6 HOH A 11 292 1511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 3 46.32 10.567 24.075 1 27.73 ? C1 RET 260 A 1 HETATM 2 C C2 RET . . . C 3 47.307 10.357 22.839 1 27.4 ? C2 RET 260 A 1 HETATM 3 C C3 RET . . . C 3 48.589 9.652 22.981 1 28.6 ? C3 RET 260 A 1 HETATM 4 C C4 RET . . . C 3 48.736 8.635 24.128 1 28.53 ? C4 RET 260 A 1 HETATM 5 C C5 RET . . . C 3 47.83 8.781 25.376 1 27.9 ? C5 RET 260 A 1 HETATM 6 C C6 RET . . . C 3 46.652 9.701 25.389 1 27.44 ? C6 RET 260 A 1 HETATM 7 C C7 RET . . . C 3 45.777 9.762 26.728 1 28.22 ? C7 RET 260 A 1 HETATM 8 C C8 RET . . . C 3 44.653 10.539 26.951 1 29.39 ? C8 RET 260 A 1 HETATM 9 C C9 RET . . . C 3 43.851 10.559 28.157 1 30.07 ? C9 RET 260 A 1 HETATM 10 C C10 RET . . . C 3 42.796 11.414 28.093 1 29.84 ? C10 RET 260 A 1 HETATM 11 C C11 RET . . . C 3 41.808 11.643 29.103 1 29.81 ? C11 RET 260 A 1 HETATM 12 C C12 RET . . . C 3 40.867 12.549 28.807 1 30.16 ? C12 RET 260 A 1 HETATM 13 C C13 RET . . . C 3 39.746 12.945 29.669 1 30.27 ? C13 RET 260 A 1 HETATM 14 C C14 RET . . . C 3 38.919 13.924 29.133 1 31.42 ? C14 RET 260 A 1 HETATM 15 C C15 RET . . . C 3 37.739 14.528 29.752 1 31.88 ? C15 RET 260 A 1 HETATM 16 C C16 RET . . . C 3 46.413 12.116 24.253 1 26.07 ? C16 RET 260 A 1 HETATM 17 C C17 RET . . . C 3 44.974 10.229 23.393 1 25.82 ? C17 RET 260 A 1 HETATM 18 C C18 RET . . . C 3 48.212 7.915 26.615 1 27.26 ? C18 RET 260 A 1 HETATM 19 C C19 RET . . . C 3 44.17 9.671 29.382 1 29.48 ? C19 RET 260 A 1 HETATM 20 C C20 RET . . . C 3 39.522 12.337 31.04 1 29.18 ? C20 RET 260 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #