data_2EI4 # _model_server_result.job_id 8s0gm8gpM1_CQpJGyCaUuQ _model_server_result.datetime_utc '2024-11-24 10:57:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ei4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":280}' # _entry.id 2EI4 # _exptl.entry_id 2EI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DI-PHYTANYL-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2EI4 _cell.length_a 98.16 _cell.length_b 98.16 _cell.length_c 56.16 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 98.16 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.08 85.009054 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 221 A LYS 221 1_555 C C15 RET . A RET 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 E O3 L2P . A L2P 280 1_555 B C1 GLC . A GLC 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C43 H88 O3' _chem_comp.formula_weight 653.157 _chem_comp.id L2P _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DI-PHYTANYL-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 L2P sing 292 n n C1 C2 L2P sing 293 n n C1 H12 L2P sing 294 n n C1 H11 L2P sing 295 n n O1 C11 L2P sing 296 n n C2 O2 L2P sing 297 n n C2 C3 L2P sing 298 n n C2 H2 L2P sing 299 n n O2 C41 L2P sing 300 n n C3 O3 L2P sing 301 n n C3 H32 L2P sing 302 n n C3 H31 L2P sing 303 n n O3 H3O L2P sing 304 n n C11 C12 L2P sing 305 n n C11 H112 L2P sing 306 n n C11 H111 L2P sing 307 n n C12 C13 L2P sing 308 n n C12 H122 L2P sing 309 n n C12 H121 L2P sing 310 n n C13 C14 L2P sing 311 n n C13 C15 L2P sing 312 n n C13 H13 L2P sing 313 n n C14 H143 L2P sing 314 n n C14 H142 L2P sing 315 n n C14 H141 L2P sing 316 n n C15 C16 L2P sing 317 n n C15 H152 L2P sing 318 n n C15 H151 L2P sing 319 n n C16 C17 L2P sing 320 n n C16 H162 L2P sing 321 n n C16 H161 L2P sing 322 n n C17 C18 L2P sing 323 n n C17 H172 L2P sing 324 n n C17 H171 L2P sing 325 n n C18 C19 L2P sing 326 n n C18 C20 L2P sing 327 n n C18 H18 L2P sing 328 n n C19 H193 L2P sing 329 n n C19 H192 L2P sing 330 n n C19 H191 L2P sing 331 n n C20 C21 L2P sing 332 n n C20 H202 L2P sing 333 n n C20 H201 L2P sing 334 n n C21 C22 L2P sing 335 n n C21 H212 L2P sing 336 n n C21 H211 L2P sing 337 n n C22 C23 L2P sing 338 n n C22 H222 L2P sing 339 n n C22 H221 L2P sing 340 n n C23 C24 L2P sing 341 n n C23 C25 L2P sing 342 n n C23 H23 L2P sing 343 n n C24 H243 L2P sing 344 n n C24 H242 L2P sing 345 n n C24 H241 L2P sing 346 n n C25 C26 L2P sing 347 n n C25 H252 L2P sing 348 n n C25 H251 L2P sing 349 n n C26 C27 L2P sing 350 n n C26 H262 L2P sing 351 n n C26 H261 L2P sing 352 n n C27 C28 L2P sing 353 n n C27 H272 L2P sing 354 n n C27 H271 L2P sing 355 n n C28 C29 L2P sing 356 n n C28 C30 L2P sing 357 n n C28 H28 L2P sing 358 n n C29 H293 L2P sing 359 n n C29 H292 L2P sing 360 n n C29 H291 L2P sing 361 n n C30 H303 L2P sing 362 n n C30 H302 L2P sing 363 n n C30 H301 L2P sing 364 n n C41 C42 L2P sing 365 n n C41 H412 L2P sing 366 n n C41 H411 L2P sing 367 n n C42 C43 L2P sing 368 n n C42 H422 L2P sing 369 n n C42 H421 L2P sing 370 n n C43 C44 L2P sing 371 n n C43 C45 L2P sing 372 n n C43 H43 L2P sing 373 n n C44 H443 L2P sing 374 n n C44 H442 L2P sing 375 n n C44 H441 L2P sing 376 n n C45 C46 L2P sing 377 n n C45 H452 L2P sing 378 n n C45 H451 L2P sing 379 n n C46 C47 L2P sing 380 n n C46 H462 L2P sing 381 n n C46 H461 L2P sing 382 n n C47 C48 L2P sing 383 n n C47 H472 L2P sing 384 n n C47 H471 L2P sing 385 n n C48 C49 L2P sing 386 n n C48 C50 L2P sing 387 n n C48 H48 L2P sing 388 n n C49 H493 L2P sing 389 n n C49 H492 L2P sing 390 n n C49 H491 L2P sing 391 n n C50 C51 L2P sing 392 n n C50 H502 L2P sing 393 n n C50 H501 L2P sing 394 n n C51 C52 L2P sing 395 n n C51 H512 L2P sing 396 n n C51 H511 L2P sing 397 n n C52 C53 L2P sing 398 n n C52 H522 L2P sing 399 n n C52 H521 L2P sing 400 n n C53 C54 L2P sing 401 n n C53 C55 L2P sing 402 n n C53 H53 L2P sing 403 n n C54 H543 L2P sing 404 n n C54 H542 L2P sing 405 n n C54 H541 L2P sing 406 n n C55 C56 L2P sing 407 n n C55 H552 L2P sing 408 n n C55 H551 L2P sing 409 n n C56 C57 L2P sing 410 n n C56 H562 L2P sing 411 n n C56 H561 L2P sing 412 n n C57 C58 L2P sing 413 n n C57 H572 L2P sing 414 n n C57 H571 L2P sing 415 n n C58 C59 L2P sing 416 n n C58 C60 L2P sing 417 n n C58 H58 L2P sing 418 n n C59 H593 L2P sing 419 n n C59 H592 L2P sing 420 n n C59 H591 L2P sing 421 n n C60 H603 L2P sing 422 n n C60 H602 L2P sing 423 n n C60 H601 L2P sing 424 n n # _atom_sites.entry_id 2EI4 _atom_sites.fract_transf_matrix[1][1] 0.010187 _atom_sites.fract_transf_matrix[1][2] 0.005882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 281 281 GLC GLC . C 3 RET A 1 260 260 RET RET . D 4 22B A 1 270 270 22B 22B . E 5 L2P A 1 280 280 L2P L2P . F 6 HOH A 1 282 1501 HOH HOH . F 6 HOH A 2 283 1502 HOH HOH . F 6 HOH A 3 284 1503 HOH HOH . F 6 HOH A 4 285 1504 HOH HOH . F 6 HOH A 5 286 1505 HOH HOH . F 6 HOH A 6 287 1506 HOH HOH . F 6 HOH A 7 288 1507 HOH HOH . F 6 HOH A 8 289 1508 HOH HOH . F 6 HOH A 9 290 1509 HOH HOH . F 6 HOH A 10 291 1510 HOH HOH . F 6 HOH A 11 292 1511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L2P . . . E 5 43.532 29.121 14.633 1 106.89 ? C1 L2P 280 A 1 HETATM 2 O O1 L2P . . . E 5 43.73 29.83 13.391 1 107.19 ? O1 L2P 280 A 1 HETATM 3 C C2 L2P . . . E 5 42.683 27.819 14.442 1 106.68 ? C2 L2P 280 A 1 HETATM 4 O O2 L2P . . . E 5 42.491 27.14 15.732 1 106 ? O2 L2P 280 A 1 HETATM 5 C C3 L2P . . . E 5 43.44 26.857 13.465 1 107.07 ? C3 L2P 280 A 1 HETATM 6 O O3 L2P . . . E 5 42.648 26.573 12.286 1 107.55 ? O3 L2P 280 A 1 HETATM 7 C C11 L2P . . . E 5 44.098 31.177 13.742 1 107.26 ? C11 L2P 280 A 1 HETATM 8 C C12 L2P . . . E 5 45.627 31.392 13.55 1 107.37 ? C12 L2P 280 A 1 HETATM 9 C C13 L2P . . . E 5 45.978 32.838 13.953 1 107.48 ? C13 L2P 280 A 1 HETATM 10 C C14 L2P . . . E 5 46.797 33.5 12.838 1 107.62 ? C14 L2P 280 A 1 HETATM 11 C C15 L2P . . . E 5 46.796 32.816 15.246 1 107.5 ? C15 L2P 280 A 1 HETATM 12 C C16 L2P . . . E 5 45.883 32.994 16.488 1 107.56 ? C16 L2P 280 A 1 HETATM 13 C C17 L2P . . . E 5 46.758 32.961 17.782 1 107.79 ? C17 L2P 280 A 1 HETATM 14 C C18 L2P . . . E 5 46.678 31.595 18.572 1 107.93 ? C18 L2P 280 A 1 HETATM 15 C C19 L2P . . . E 5 45.68 30.524 17.937 1 108.01 ? C19 L2P 280 A 1 HETATM 16 C C20 L2P . . . E 5 46.277 31.871 20.02 1 108.05 ? C20 L2P 280 A 1 HETATM 17 C C21 L2P . . . E 5 47.52 31.847 20.904 1 108.24 ? C21 L2P 280 A 1 HETATM 18 C C22 L2P . . . E 5 47.118 32.116 22.402 1 108.27 ? C22 L2P 280 A 1 HETATM 19 C C23 L2P . . . E 5 47.4 30.881 23.344 1 108.36 ? C23 L2P 280 A 1 HETATM 20 C C24 L2P . . . E 5 48.039 29.635 22.581 1 108.31 ? C24 L2P 280 A 1 HETATM 21 C C25 L2P . . . E 5 46.032 30.43 24.036 1 108.4 ? C25 L2P 280 A 1 HETATM 22 C C26 L2P . . . E 5 46.296 29.887 25.48 1 108.55 ? C26 L2P 280 A 1 HETATM 23 C C27 L2P . . . E 5 46.064 28.29 25.483 1 108.54 ? C27 L2P 280 A 1 HETATM 24 C C28 L2P . . . E 5 44.67 27.788 26.134 1 108.48 ? C28 L2P 280 A 1 HETATM 25 C C29 L2P . . . E 5 43.696 28.921 26.677 1 108.48 ? C29 L2P 280 A 1 HETATM 26 C C30 L2P . . . E 5 43.922 26.963 25.083 1 108.47 ? C30 L2P 280 A 1 HETATM 27 C C41 L2P . . . E 5 41.761 27.955 16.749 1 105.07 ? C41 L2P 280 A 1 HETATM 28 C C42 L2P . . . E 5 41.789 27.222 18.158 1 104.12 ? C42 L2P 280 A 1 HETATM 29 C C43 L2P . . . E 5 40.576 26.153 18.323 1 103.45 ? C43 L2P 280 A 1 HETATM 30 C C44 L2P . . . E 5 39.149 26.83 18.099 1 103.5 ? C44 L2P 280 A 1 HETATM 31 C C45 L2P . . . E 5 40.733 25.466 19.806 1 102.65 ? C45 L2P 280 A 1 HETATM 32 C C46 L2P . . . E 5 39.489 25.56 20.785 1 101.79 ? C46 L2P 280 A 1 HETATM 33 C C47 L2P . . . E 5 39.995 26.149 22.14 1 101.08 ? C47 L2P 280 A 1 HETATM 34 C C48 L2P . . . E 5 39.54 25.333 23.428 1 100.58 ? C48 L2P 280 A 1 HETATM 35 C C49 L2P . . . E 5 37.956 25.268 23.509 1 100.48 ? C49 L2P 280 A 1 HETATM 36 C C50 L2P . . . E 5 40.149 26.078 24.662 1 100.17 ? C50 L2P 280 A 1 HETATM 37 C C51 L2P . . . E 5 39.838 25.449 26.051 1 99.82 ? C51 L2P 280 A 1 HETATM 38 C C52 L2P . . . E 5 40.537 26.37 27.09 1 99.38 ? C52 L2P 280 A 1 HETATM 39 C C53 L2P . . . E 5 39.642 26.72 28.324 1 99.02 ? C53 L2P 280 A 1 HETATM 40 C C54 L2P . . . E 5 38.803 27.971 27.978 1 99.13 ? C54 L2P 280 A 1 HETATM 41 C C55 L2P . . . E 5 40.606 26.971 29.545 1 98.9 ? C55 L2P 280 A 1 HETATM 42 C C56 L2P . . . E 5 39.86 27.329 30.889 1 98.61 ? C56 L2P 280 A 1 HETATM 43 C C57 L2P . . . E 5 40.609 26.614 32.06 1 98.52 ? C57 L2P 280 A 1 HETATM 44 C C58 L2P . . . E 5 39.922 26.924 33.429 1 98.29 ? C58 L2P 280 A 1 HETATM 45 C C59 L2P . . . E 5 39.058 25.74 33.871 1 98.27 ? C59 L2P 280 A 1 HETATM 46 C C60 L2P . . . E 5 41 27.199 34.51 1 98.18 ? C60 L2P 280 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #