data_2EIQ
#
_model_server_result.job_id            KkQGXnV0DTz00bfRZw-ogg 
_model_server_result.datetime_utc      '2024-12-21 12:09:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2eiq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    2EIQ 
#
_exptl.entry_id    2EIQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.33 
_cell.angle_gamma         90 
_cell.entry_id            2EIQ 
_cell.length_a            89.209 
_cell.length_b            49.557 
_cell.length_c            59.427 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2EIQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,C,D,G 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 65.674342 0 54.568198 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 32 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
disulf ? disulf2 A SG CYS 89 A CYS 89 1_555 A SG CYS 89 A CYS 89 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
disulf ? disulf3 B SG CYS 32 B CYS 32 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
disulf ? disulf4 B SG CYS 89 B CYS 89 1_555 B SG CYS 89 B CYS 89 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc1 A N SER 1 A SER 1 1_555 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc2 A N ASP 2 A ASP 2 1_555 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc3 A OD1 ASP 2 A ASP 2 1_555 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc4 A OD1 ASP 10 A ASP 10 4_546 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc5 A OD2 ASP 10 A ASP 10 4_546 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc6 B N SER 1 B SER 1 1_555 E CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc7 B N ASP 2 B ASP 2 1_555 E CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc8 B OD1 ASP 10 B ASP 10 4_545 E CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc9 B OD2 ASP 10 B ASP 10 4_545 E CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     2EIQ 
_atom_sites.fract_transf_matrix[1][1]    0.01121 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004835 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 201 201 CU CU . 
D 3 MPD A 1 302 302 MPD MPD . 
E 2 CU B 1 202 202 CU CU . 
F 3 MPD B 1 301 301 MPD MPD . 
G 4 HOH A 1 303 3 HOH HOH . 
G 4 HOH A 2 304 6 HOH HOH . 
G 4 HOH A 3 305 7 HOH HOH . 
G 4 HOH A 4 306 9 HOH HOH . 
G 4 HOH A 5 307 10 HOH HOH . 
G 4 HOH A 6 308 12 HOH HOH . 
G 4 HOH A 7 309 15 HOH HOH . 
G 4 HOH A 8 310 16 HOH HOH . 
G 4 HOH A 9 311 18 HOH HOH . 
G 4 HOH A 10 312 20 HOH HOH . 
G 4 HOH A 11 313 21 HOH HOH . 
G 4 HOH A 12 314 22 HOH HOH . 
G 4 HOH A 13 315 26 HOH HOH . 
G 4 HOH A 14 316 28 HOH HOH . 
G 4 HOH A 15 317 30 HOH HOH . 
G 4 HOH A 16 318 32 HOH HOH . 
G 4 HOH A 17 319 33 HOH HOH . 
G 4 HOH A 18 320 35 HOH HOH . 
G 4 HOH A 19 321 36 HOH HOH . 
G 4 HOH A 20 322 38 HOH HOH . 
G 4 HOH A 21 323 41 HOH HOH . 
G 4 HOH A 22 324 43 HOH HOH . 
G 4 HOH A 23 325 46 HOH HOH . 
G 4 HOH A 24 326 47 HOH HOH . 
G 4 HOH A 25 327 49 HOH HOH . 
G 4 HOH A 26 328 54 HOH HOH . 
G 4 HOH A 27 329 56 HOH HOH . 
G 4 HOH A 28 330 58 HOH HOH . 
G 4 HOH A 29 331 59 HOH HOH . 
G 4 HOH A 30 332 63 HOH HOH . 
G 4 HOH A 31 333 64 HOH HOH . 
G 4 HOH A 32 334 65 HOH HOH . 
G 4 HOH A 33 335 67 HOH HOH . 
G 4 HOH A 34 336 68 HOH HOH . 
G 4 HOH A 35 337 69 HOH HOH . 
G 4 HOH A 36 338 70 HOH HOH . 
G 4 HOH A 37 339 71 HOH HOH . 
G 4 HOH A 38 340 75 HOH HOH . 
G 4 HOH A 39 341 76 HOH HOH . 
G 4 HOH A 40 342 79 HOH HOH . 
G 4 HOH A 41 343 80 HOH HOH . 
G 4 HOH A 42 344 81 HOH HOH . 
G 4 HOH A 43 345 83 HOH HOH . 
G 4 HOH A 44 346 84 HOH HOH . 
G 4 HOH A 45 347 85 HOH HOH . 
G 4 HOH A 46 348 88 HOH HOH . 
G 4 HOH A 47 349 89 HOH HOH . 
G 4 HOH A 48 350 90 HOH HOH . 
G 4 HOH A 49 351 94 HOH HOH . 
G 4 HOH A 50 352 95 HOH HOH . 
G 4 HOH A 51 353 97 HOH HOH . 
G 4 HOH A 52 354 98 HOH HOH . 
G 4 HOH A 53 355 99 HOH HOH . 
G 4 HOH A 54 356 102 HOH HOH . 
G 4 HOH A 55 357 104 HOH HOH . 
G 4 HOH A 56 358 109 HOH HOH . 
G 4 HOH A 57 359 110 HOH HOH . 
G 4 HOH A 58 360 112 HOH HOH . 
G 4 HOH A 59 361 114 HOH HOH . 
G 4 HOH A 60 362 115 HOH HOH . 
G 4 HOH A 61 363 116 HOH HOH . 
G 4 HOH A 62 364 117 HOH HOH . 
G 4 HOH A 63 365 118 HOH HOH . 
G 4 HOH A 64 366 119 HOH HOH . 
G 4 HOH A 65 367 121 HOH HOH . 
G 4 HOH A 66 368 122 HOH HOH . 
H 4 HOH B 1 302 1 HOH HOH . 
H 4 HOH B 2 303 2 HOH HOH . 
H 4 HOH B 3 304 4 HOH HOH . 
H 4 HOH B 4 305 5 HOH HOH . 
H 4 HOH B 5 306 8 HOH HOH . 
H 4 HOH B 6 307 11 HOH HOH . 
H 4 HOH B 7 308 13 HOH HOH . 
H 4 HOH B 8 309 14 HOH HOH . 
H 4 HOH B 9 310 17 HOH HOH . 
H 4 HOH B 10 311 19 HOH HOH . 
H 4 HOH B 11 312 23 HOH HOH . 
H 4 HOH B 12 313 24 HOH HOH . 
H 4 HOH B 13 314 25 HOH HOH . 
H 4 HOH B 14 315 27 HOH HOH . 
H 4 HOH B 15 316 29 HOH HOH . 
H 4 HOH B 16 317 31 HOH HOH . 
H 4 HOH B 17 318 34 HOH HOH . 
H 4 HOH B 18 319 37 HOH HOH . 
H 4 HOH B 19 320 39 HOH HOH . 
H 4 HOH B 20 321 40 HOH HOH . 
H 4 HOH B 21 322 42 HOH HOH . 
H 4 HOH B 22 323 44 HOH HOH . 
H 4 HOH B 23 324 45 HOH HOH . 
H 4 HOH B 24 325 48 HOH HOH . 
H 4 HOH B 25 326 50 HOH HOH . 
H 4 HOH B 26 327 51 HOH HOH . 
H 4 HOH B 27 328 52 HOH HOH . 
H 4 HOH B 28 329 53 HOH HOH . 
H 4 HOH B 29 330 55 HOH HOH . 
H 4 HOH B 30 331 57 HOH HOH . 
H 4 HOH B 31 332 60 HOH HOH . 
H 4 HOH B 32 333 61 HOH HOH . 
H 4 HOH B 33 334 62 HOH HOH . 
H 4 HOH B 34 335 66 HOH HOH . 
H 4 HOH B 35 336 72 HOH HOH . 
H 4 HOH B 36 337 73 HOH HOH . 
H 4 HOH B 37 338 74 HOH HOH . 
H 4 HOH B 38 339 77 HOH HOH . 
H 4 HOH B 39 340 78 HOH HOH . 
H 4 HOH B 40 341 82 HOH HOH . 
H 4 HOH B 41 342 86 HOH HOH . 
H 4 HOH B 42 343 87 HOH HOH . 
H 4 HOH B 43 344 91 HOH HOH . 
H 4 HOH B 44 345 92 HOH HOH . 
H 4 HOH B 45 346 93 HOH HOH . 
H 4 HOH B 46 347 96 HOH HOH . 
H 4 HOH B 47 348 100 HOH HOH . 
H 4 HOH B 48 349 101 HOH HOH . 
H 4 HOH B 49 350 103 HOH HOH . 
H 4 HOH B 50 351 105 HOH HOH . 
H 4 HOH B 51 352 106 HOH HOH . 
H 4 HOH B 52 353 107 HOH HOH . 
H 4 HOH B 53 354 108 HOH HOH . 
H 4 HOH B 54 355 111 HOH HOH . 
H 4 HOH B 55 356 113 HOH HOH . 
H 4 HOH B 56 357 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 19.94 8.69 6.591 1 31.9 ? C1 MPD 301 B 1 
HETATM 2 C C2 MPD . . . F 3 21.13 9.593 6.871 1 31.61 ? C2 MPD 301 B 1 
HETATM 3 O O2 MPD . . . F 3 22.254 8.762 7.3 1 34.37 ? O2 MPD 301 B 1 
HETATM 4 C CM MPD . . . F 3 21.498 10.28 5.568 1 27.97 ? CM MPD 301 B 1 
HETATM 5 C C3 MPD . . . F 3 20.743 10.601 7.962 1 30.38 ? C3 MPD 301 B 1 
HETATM 6 C C4 MPD . . . F 3 21.839 11.581 8.375 1 29.96 ? C4 MPD 301 B 1 
HETATM 7 O O4 MPD . . . F 3 22.254 12.336 7.258 1 28.44 ? O4 MPD 301 B 1 
HETATM 8 C C5 MPD . . . F 3 21.318 12.537 9.436 1 28.37 ? C5 MPD 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#