data_2EJG # _model_server_result.job_id FZc8yjrkGQm0VlpQJD0ubw _model_server_result.datetime_utc '2025-01-11 03:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ejg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1501}' # _entry.id 2EJG # _exptl.entry_id 2EJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.65 _cell.angle_gamma 90 _cell.entry_id 2EJG _cell.length_a 69.572 _cell.length_b 63.487 _cell.length_c 74.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 2EJG _atom_sites.fract_transf_matrix[1][1] 0.014374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000917 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BTN A 1 1401 1401 BTN BTN . F 4 ADN A 1 1501 1501 ADN ADN . G 3 BTN B 1 1402 1402 BTN BTN . H 4 ADN B 1 1502 1502 ADN ADN . I 5 HOH A 1 1502 1 HOH HOH . I 5 HOH A 2 1503 5 HOH HOH . I 5 HOH A 3 1504 6 HOH HOH . I 5 HOH A 4 1505 8 HOH HOH . I 5 HOH A 5 1506 9 HOH HOH . I 5 HOH A 6 1507 13 HOH HOH . I 5 HOH A 7 1508 15 HOH HOH . I 5 HOH A 8 1509 21 HOH HOH . I 5 HOH A 9 1510 22 HOH HOH . I 5 HOH A 10 1511 24 HOH HOH . I 5 HOH A 11 1512 25 HOH HOH . I 5 HOH A 12 1513 26 HOH HOH . I 5 HOH A 13 1514 27 HOH HOH . I 5 HOH A 14 1515 29 HOH HOH . I 5 HOH A 15 1516 30 HOH HOH . I 5 HOH A 16 1517 32 HOH HOH . I 5 HOH A 17 1518 35 HOH HOH . I 5 HOH A 18 1519 46 HOH HOH . I 5 HOH A 19 1520 47 HOH HOH . I 5 HOH A 20 1521 53 HOH HOH . I 5 HOH A 21 1522 95 HOH HOH . I 5 HOH A 22 1523 99 HOH HOH . I 5 HOH A 23 1524 102 HOH HOH . I 5 HOH A 24 1525 104 HOH HOH . I 5 HOH A 25 1526 105 HOH HOH . I 5 HOH A 26 1527 106 HOH HOH . I 5 HOH A 27 1528 125 HOH HOH . I 5 HOH A 28 1529 162 HOH HOH . I 5 HOH A 29 1530 163 HOH HOH . I 5 HOH A 30 1531 164 HOH HOH . I 5 HOH A 31 1532 165 HOH HOH . I 5 HOH A 32 1533 169 HOH HOH . I 5 HOH A 33 1534 172 HOH HOH . I 5 HOH A 34 1535 175 HOH HOH . I 5 HOH A 35 1536 176 HOH HOH . I 5 HOH A 36 1537 179 HOH HOH . I 5 HOH A 37 1538 182 HOH HOH . I 5 HOH A 38 1539 183 HOH HOH . I 5 HOH A 39 1540 184 HOH HOH . I 5 HOH A 40 1541 185 HOH HOH . I 5 HOH A 41 1542 207 HOH HOH . I 5 HOH A 42 1543 208 HOH HOH . I 5 HOH A 43 1544 210 HOH HOH . I 5 HOH A 44 1545 219 HOH HOH . I 5 HOH A 45 1546 220 HOH HOH . I 5 HOH A 46 1547 222 HOH HOH . I 5 HOH A 47 1548 223 HOH HOH . I 5 HOH A 48 1549 227 HOH HOH . I 5 HOH A 49 1550 228 HOH HOH . I 5 HOH A 50 1551 245 HOH HOH . I 5 HOH A 51 1552 260 HOH HOH . I 5 HOH A 52 1553 262 HOH HOH . I 5 HOH A 53 1554 263 HOH HOH . I 5 HOH A 54 1555 264 HOH HOH . I 5 HOH A 55 1556 293 HOH HOH . I 5 HOH A 56 1557 307 HOH HOH . I 5 HOH A 57 1558 310 HOH HOH . I 5 HOH A 58 1559 311 HOH HOH . I 5 HOH A 59 1560 314 HOH HOH . I 5 HOH A 60 1561 318 HOH HOH . I 5 HOH A 61 1562 322 HOH HOH . I 5 HOH A 62 1563 323 HOH HOH . I 5 HOH A 63 1564 326 HOH HOH . I 5 HOH A 64 1565 358 HOH HOH . I 5 HOH A 65 1566 360 HOH HOH . I 5 HOH A 66 1567 361 HOH HOH . I 5 HOH A 67 1568 375 HOH HOH . I 5 HOH A 68 1569 403 HOH HOH . I 5 HOH A 69 1570 405 HOH HOH . I 5 HOH A 70 1571 415 HOH HOH . I 5 HOH A 71 1572 419 HOH HOH . I 5 HOH A 72 1573 422 HOH HOH . I 5 HOH A 73 1574 425 HOH HOH . I 5 HOH A 74 1575 294 HOH HOH . J 5 HOH B 1 1503 3 HOH HOH . J 5 HOH B 2 1504 14 HOH HOH . J 5 HOH B 3 1505 18 HOH HOH . J 5 HOH B 4 1506 19 HOH HOH . J 5 HOH B 5 1507 20 HOH HOH . J 5 HOH B 6 1508 34 HOH HOH . J 5 HOH B 7 1509 40 HOH HOH . J 5 HOH B 8 1510 41 HOH HOH . J 5 HOH B 9 1511 52 HOH HOH . J 5 HOH B 10 1512 55 HOH HOH . J 5 HOH B 11 1513 56 HOH HOH . J 5 HOH B 12 1514 57 HOH HOH . J 5 HOH B 13 1515 58 HOH HOH . J 5 HOH B 14 1516 59 HOH HOH . J 5 HOH B 15 1517 60 HOH HOH . J 5 HOH B 16 1518 63 HOH HOH . J 5 HOH B 17 1519 65 HOH HOH . J 5 HOH B 18 1520 67 HOH HOH . J 5 HOH B 19 1521 68 HOH HOH . J 5 HOH B 20 1522 69 HOH HOH . J 5 HOH B 21 1523 70 HOH HOH . J 5 HOH B 22 1524 71 HOH HOH . J 5 HOH B 23 1525 93 HOH HOH . J 5 HOH B 24 1526 124 HOH HOH . J 5 HOH B 25 1527 126 HOH HOH . J 5 HOH B 26 1528 128 HOH HOH . J 5 HOH B 27 1529 132 HOH HOH . J 5 HOH B 28 1530 134 HOH HOH . J 5 HOH B 29 1531 135 HOH HOH . J 5 HOH B 30 1532 136 HOH HOH . J 5 HOH B 31 1533 138 HOH HOH . J 5 HOH B 32 1534 143 HOH HOH . J 5 HOH B 33 1535 144 HOH HOH . J 5 HOH B 34 1536 149 HOH HOH . J 5 HOH B 35 1537 150 HOH HOH . J 5 HOH B 36 1538 188 HOH HOH . J 5 HOH B 37 1539 196 HOH HOH . J 5 HOH B 38 1540 197 HOH HOH . J 5 HOH B 39 1541 231 HOH HOH . J 5 HOH B 40 1542 232 HOH HOH . J 5 HOH B 41 1543 233 HOH HOH . J 5 HOH B 42 1544 234 HOH HOH . J 5 HOH B 43 1545 238 HOH HOH . J 5 HOH B 44 1546 240 HOH HOH . J 5 HOH B 45 1547 241 HOH HOH . J 5 HOH B 46 1548 242 HOH HOH . J 5 HOH B 47 1549 243 HOH HOH . J 5 HOH B 48 1550 244 HOH HOH . J 5 HOH B 49 1551 252 HOH HOH . J 5 HOH B 50 1552 253 HOH HOH . J 5 HOH B 51 1553 256 HOH HOH . J 5 HOH B 52 1554 258 HOH HOH . J 5 HOH B 53 1555 270 HOH HOH . J 5 HOH B 54 1556 271 HOH HOH . J 5 HOH B 55 1557 273 HOH HOH . J 5 HOH B 56 1558 278 HOH HOH . J 5 HOH B 57 1559 279 HOH HOH . J 5 HOH B 58 1560 280 HOH HOH . J 5 HOH B 59 1561 281 HOH HOH . J 5 HOH B 60 1562 297 HOH HOH . J 5 HOH B 61 1563 299 HOH HOH . J 5 HOH B 62 1564 300 HOH HOH . J 5 HOH B 63 1565 328 HOH HOH . J 5 HOH B 64 1566 329 HOH HOH . J 5 HOH B 65 1567 331 HOH HOH . J 5 HOH B 66 1568 332 HOH HOH . J 5 HOH B 67 1569 333 HOH HOH . J 5 HOH B 68 1570 334 HOH HOH . J 5 HOH B 69 1571 335 HOH HOH . J 5 HOH B 70 1572 337 HOH HOH . J 5 HOH B 71 1573 338 HOH HOH . J 5 HOH B 72 1574 340 HOH HOH . J 5 HOH B 73 1575 365 HOH HOH . J 5 HOH B 74 1576 379 HOH HOH . J 5 HOH B 75 1577 380 HOH HOH . J 5 HOH B 76 1578 381 HOH HOH . J 5 HOH B 77 1579 383 HOH HOH . J 5 HOH B 78 1580 385 HOH HOH . J 5 HOH B 79 1581 386 HOH HOH . J 5 HOH B 80 1582 389 HOH HOH . J 5 HOH B 81 1583 390 HOH HOH . J 5 HOH B 82 1584 393 HOH HOH . J 5 HOH B 83 1585 394 HOH HOH . J 5 HOH B 84 1586 395 HOH HOH . J 5 HOH B 85 1587 396 HOH HOH . J 5 HOH B 86 1588 397 HOH HOH . J 5 HOH B 87 1589 398 HOH HOH . J 5 HOH B 88 1590 401 HOH HOH . J 5 HOH B 89 1591 412 HOH HOH . J 5 HOH B 90 1592 416 HOH HOH . J 5 HOH B 91 1593 417 HOH HOH . J 5 HOH B 92 1594 418 HOH HOH . J 5 HOH B 93 1595 420 HOH HOH . K 5 HOH C 1 150 42 HOH HOH . K 5 HOH C 2 151 45 HOH HOH . K 5 HOH C 3 152 48 HOH HOH . K 5 HOH C 4 153 49 HOH HOH . K 5 HOH C 5 154 50 HOH HOH . K 5 HOH C 6 155 90 HOH HOH . K 5 HOH C 7 156 101 HOH HOH . K 5 HOH C 8 157 114 HOH HOH . K 5 HOH C 9 158 116 HOH HOH . K 5 HOH C 10 159 118 HOH HOH . K 5 HOH C 11 160 120 HOH HOH . K 5 HOH C 12 161 121 HOH HOH . K 5 HOH C 13 162 173 HOH HOH . K 5 HOH C 14 163 217 HOH HOH . K 5 HOH C 15 164 226 HOH HOH . K 5 HOH C 16 165 268 HOH HOH . K 5 HOH C 17 166 282 HOH HOH . K 5 HOH C 18 167 319 HOH HOH . K 5 HOH C 19 168 327 HOH HOH . K 5 HOH C 20 169 347 HOH HOH . K 5 HOH C 21 170 367 HOH HOH . K 5 HOH C 22 171 371 HOH HOH . K 5 HOH C 23 172 402 HOH HOH . K 5 HOH C 24 173 404 HOH HOH . K 5 HOH C 25 174 407 HOH HOH . K 5 HOH C 26 175 408 HOH HOH . L 5 HOH D 1 150 80 HOH HOH . L 5 HOH D 2 151 83 HOH HOH . L 5 HOH D 3 152 86 HOH HOH . L 5 HOH D 4 153 87 HOH HOH . L 5 HOH D 5 154 89 HOH HOH . L 5 HOH D 6 155 133 HOH HOH . L 5 HOH D 7 156 155 HOH HOH . L 5 HOH D 8 157 156 HOH HOH . L 5 HOH D 9 158 157 HOH HOH . L 5 HOH D 10 159 158 HOH HOH . L 5 HOH D 11 160 159 HOH HOH . L 5 HOH D 12 161 160 HOH HOH . L 5 HOH D 13 162 187 HOH HOH . L 5 HOH D 14 163 204 HOH HOH . L 5 HOH D 15 164 205 HOH HOH . L 5 HOH D 16 165 289 HOH HOH . L 5 HOH D 17 167 304 HOH HOH . L 5 HOH D 18 168 306 HOH HOH . L 5 HOH D 19 169 343 HOH HOH . L 5 HOH D 20 170 344 HOH HOH . L 5 HOH D 21 171 349 HOH HOH . L 5 HOH D 22 172 352 HOH HOH . L 5 HOH D 23 173 354 HOH HOH . L 5 HOH D 24 174 355 HOH HOH . L 5 HOH D 25 175 356 HOH HOH . L 5 HOH D 26 176 357 HOH HOH . L 5 HOH D 27 177 384 HOH HOH . L 5 HOH D 28 178 410 HOH HOH . L 5 HOH D 29 179 411 HOH HOH . L 5 HOH D 30 180 413 HOH HOH . L 5 HOH D 31 181 421 HOH HOH . L 5 HOH D 32 182 424 HOH HOH . L 5 HOH D 33 1565 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . F 4 -8.529 -3.559 12.805 1 67.21 ? O5' ADN 1501 A 1 HETATM 2 C C5' ADN . . . F 4 -9.247 -4.741 12.429 1 67.57 ? C5' ADN 1501 A 1 HETATM 3 C C4' ADN . . . F 4 -10.564 -4.365 11.728 1 66.21 ? C4' ADN 1501 A 1 HETATM 4 O O4' ADN . . . F 4 -10.283 -3.609 10.521 1 64 ? O4' ADN 1501 A 1 HETATM 5 C C3' ADN . . . F 4 -11.36 -5.619 11.323 1 66.44 ? C3' ADN 1501 A 1 HETATM 6 O O3' ADN . . . F 4 -12.46 -5.857 12.218 1 68.33 ? O3' ADN 1501 A 1 HETATM 7 C C2' ADN . . . F 4 -11.786 -5.383 9.851 1 64.84 ? C2' ADN 1501 A 1 HETATM 8 O O2' ADN . . . F 4 -13.207 -5.454 9.65 1 64.7 ? O2' ADN 1501 A 1 HETATM 9 C C1' ADN . . . F 4 -11.215 -4.002 9.476 1 62.38 ? C1' ADN 1501 A 1 HETATM 10 N N9 ADN . . . F 4 -10.502 -4.034 8.174 1 59.24 ? N9 ADN 1501 A 1 HETATM 11 C C8 ADN . . . F 4 -9.79 -5.069 7.615 1 56.65 ? C8 ADN 1501 A 1 HETATM 12 N N7 ADN . . . F 4 -9.274 -4.619 6.347 1 53.68 ? N7 ADN 1501 A 1 HETATM 13 C C5 ADN . . . F 4 -9.658 -3.363 6.149 1 56.36 ? C5 ADN 1501 A 1 HETATM 14 C C6 ADN . . . F 4 -9.475 -2.39 5.123 1 56.65 ? C6 ADN 1501 A 1 HETATM 15 N N6 ADN . . . F 4 -8.738 -2.689 3.997 1 55.85 ? N6 ADN 1501 A 1 HETATM 16 N N1 ADN . . . F 4 -10.04 -1.146 5.267 1 57.68 ? N1 ADN 1501 A 1 HETATM 17 C C2 ADN . . . F 4 -10.771 -0.803 6.362 1 57.77 ? C2 ADN 1501 A 1 HETATM 18 N N3 ADN . . . F 4 -10.975 -1.682 7.356 1 57.14 ? N3 ADN 1501 A 1 HETATM 19 C C4 ADN . . . F 4 -10.448 -2.958 7.304 1 58.2 ? C4 ADN 1501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #