data_2EK0 # _model_server_result.job_id gUgdI4GiFUAu1HuatI11Yw _model_server_result.datetime_utc '2024-10-11 02:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ek0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 2EK0 # _exptl.entry_id 2EK0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EK0 _cell.length_a 69.237 _cell.length_b 72.772 _cell.length_c 68.438 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 B,D,E,G 2 1,2 A,C,F 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.237 0 34.219 3 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 34.6185 36.386 34.219 4 'crystal symmetry operation' 8_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 34.6185 36.386 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 30 A GLU 30 6_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A OE2 GLU 30 A GLU 30 6_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc3 A OE2 GLU 72 A GLU 72 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc4 A OE2 GLU 74 A GLU 74 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 A OE1 GLU 74 A GLU 74 1_555 C ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 A OE1 GLU 75 A GLU 75 8_555 E ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A OE1 GLU 75 A GLU 75 6_555 E ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 A NZ LYS 80 A LYS 80 6_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 C ZN ZN . A ZN 102 1_555 B OE1 GLU 30 B GLU 30 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc10 C ZN ZN . A ZN 102 1_555 B OE2 GLU 30 B GLU 30 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc11 C ZN ZN . A ZN 102 1_555 B NZ LYS 80 B LYS 80 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 B OE2 GLU 74 B GLU 74 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc13 B OE1 GLU 74 B GLU 74 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc14 B OE1 GLU 75 B GLU 75 1_555 E ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc15 B OE1 GLU 75 B GLU 75 3_655 E ZN ZN . B ZN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc16 E ZN ZN . B ZN 103 1_555 G O HOH . B HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc17 E ZN ZN . B ZN 103 1_555 G O HOH . B HOH 110 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2EK0 _atom_sites.fract_transf_matrix[1][1] 0.014443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 102 2 ZN ZN2 . D 2 ZN B 1 101 1 ZN ZN2 . E 2 ZN B 1 103 3 ZN ZN2 . F 3 HOH A 1 103 1 HOH HOH . F 3 HOH A 2 104 3 HOH HOH . F 3 HOH A 3 105 6 HOH HOH . F 3 HOH A 4 106 8 HOH HOH . F 3 HOH A 5 107 9 HOH HOH . F 3 HOH A 6 108 10 HOH HOH . F 3 HOH A 7 109 11 HOH HOH . F 3 HOH A 8 110 12 HOH HOH . F 3 HOH A 9 111 13 HOH HOH . F 3 HOH A 10 112 15 HOH HOH . F 3 HOH A 11 113 16 HOH HOH . F 3 HOH A 12 114 17 HOH HOH . F 3 HOH A 13 115 18 HOH HOH . F 3 HOH A 14 116 19 HOH HOH . F 3 HOH A 15 117 22 HOH HOH . F 3 HOH A 16 118 23 HOH HOH . F 3 HOH A 17 119 24 HOH HOH . F 3 HOH A 18 120 26 HOH HOH . F 3 HOH A 19 121 27 HOH HOH . F 3 HOH A 20 122 28 HOH HOH . F 3 HOH A 21 123 30 HOH HOH . F 3 HOH A 22 124 37 HOH HOH . F 3 HOH A 23 125 41 HOH HOH . F 3 HOH A 24 126 44 HOH HOH . F 3 HOH A 25 127 47 HOH HOH . F 3 HOH A 26 128 48 HOH HOH . F 3 HOH A 27 129 49 HOH HOH . F 3 HOH A 28 130 51 HOH HOH . F 3 HOH A 29 131 54 HOH HOH . F 3 HOH A 30 132 56 HOH HOH . F 3 HOH A 31 133 59 HOH HOH . F 3 HOH A 32 134 62 HOH HOH . F 3 HOH A 33 135 63 HOH HOH . F 3 HOH A 34 136 64 HOH HOH . F 3 HOH A 35 137 66 HOH HOH . F 3 HOH A 36 138 67 HOH HOH . F 3 HOH A 37 139 68 HOH HOH . F 3 HOH A 38 140 69 HOH HOH . F 3 HOH A 39 141 70 HOH HOH . G 3 HOH B 1 104 2 HOH HOH . G 3 HOH B 2 105 4 HOH HOH . G 3 HOH B 3 106 5 HOH HOH . G 3 HOH B 4 107 7 HOH HOH . G 3 HOH B 5 108 14 HOH HOH . G 3 HOH B 6 109 20 HOH HOH . G 3 HOH B 7 110 21 HOH HOH . G 3 HOH B 8 111 25 HOH HOH . G 3 HOH B 9 112 29 HOH HOH . G 3 HOH B 10 113 31 HOH HOH . G 3 HOH B 11 114 32 HOH HOH . G 3 HOH B 12 115 33 HOH HOH . G 3 HOH B 13 116 34 HOH HOH . G 3 HOH B 14 117 35 HOH HOH . G 3 HOH B 15 118 36 HOH HOH . G 3 HOH B 16 119 38 HOH HOH . G 3 HOH B 17 120 39 HOH HOH . G 3 HOH B 18 121 40 HOH HOH . G 3 HOH B 19 122 42 HOH HOH . G 3 HOH B 20 123 43 HOH HOH . G 3 HOH B 21 124 45 HOH HOH . G 3 HOH B 22 125 46 HOH HOH . G 3 HOH B 23 126 50 HOH HOH . G 3 HOH B 24 127 52 HOH HOH . G 3 HOH B 25 128 53 HOH HOH . G 3 HOH B 26 129 55 HOH HOH . G 3 HOH B 27 130 57 HOH HOH . G 3 HOH B 28 131 58 HOH HOH . G 3 HOH B 29 132 60 HOH HOH . G 3 HOH B 30 133 61 HOH HOH . G 3 HOH B 31 134 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.621 _atom_site.Cartn_y 22.588 _atom_site.Cartn_z 17.112 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 51.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 103 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #