data_2EMR # _model_server_result.job_id ZNAXYAqDE5BHiXOvzrDQhg _model_server_result.datetime_utc '2024-10-14 00:22:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2emr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":310}' # _entry.id 2EMR # _exptl.entry_id 2EMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EMR _cell.length_a 105.597 _cell.length_b 105.597 _cell.length_c 139.682 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 117 A TYR 117 1_555 C NA NA . A NA 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 C NA NA . A NA 310 1_555 E O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 C NA NA . A NA 310 1_555 E O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 C NA NA . A NA 310 1_555 F O HOH . B HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 C NA NA . A NA 310 1_555 F O HOH . B HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2EMR _atom_sites.fract_transf_matrix[1][1] 0.00947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 310 310 NA NA1 . D 3 SAH A 1 301 301 SAH SAH . E 4 HOH A 1 311 2 HOH HOH . E 4 HOH A 2 312 8 HOH HOH . E 4 HOH A 3 313 10 HOH HOH . E 4 HOH A 4 314 14 HOH HOH . E 4 HOH A 5 315 16 HOH HOH . E 4 HOH A 6 316 26 HOH HOH . E 4 HOH A 7 317 27 HOH HOH . E 4 HOH A 8 318 28 HOH HOH . E 4 HOH A 9 319 32 HOH HOH . E 4 HOH A 10 320 33 HOH HOH . E 4 HOH A 11 321 35 HOH HOH . E 4 HOH A 12 322 37 HOH HOH . E 4 HOH A 13 323 43 HOH HOH . E 4 HOH A 14 324 45 HOH HOH . E 4 HOH A 15 325 49 HOH HOH . E 4 HOH A 16 326 51 HOH HOH . E 4 HOH A 17 327 52 HOH HOH . E 4 HOH A 18 328 54 HOH HOH . E 4 HOH A 19 329 56 HOH HOH . E 4 HOH A 20 330 60 HOH HOH . E 4 HOH A 21 331 61 HOH HOH . E 4 HOH A 22 332 62 HOH HOH . E 4 HOH A 23 333 63 HOH HOH . E 4 HOH A 24 334 64 HOH HOH . E 4 HOH A 25 335 71 HOH HOH . E 4 HOH A 26 336 72 HOH HOH . E 4 HOH A 27 337 74 HOH HOH . E 4 HOH A 28 338 76 HOH HOH . E 4 HOH A 29 339 77 HOH HOH . E 4 HOH A 30 340 79 HOH HOH . E 4 HOH A 31 341 85 HOH HOH . E 4 HOH A 32 342 87 HOH HOH . E 4 HOH A 33 343 88 HOH HOH . E 4 HOH A 34 344 89 HOH HOH . E 4 HOH A 35 345 92 HOH HOH . E 4 HOH A 36 346 94 HOH HOH . E 4 HOH A 37 347 102 HOH HOH . E 4 HOH A 38 348 105 HOH HOH . E 4 HOH A 39 349 106 HOH HOH . E 4 HOH A 40 350 108 HOH HOH . E 4 HOH A 41 351 113 HOH HOH . E 4 HOH A 42 352 117 HOH HOH . E 4 HOH A 43 353 118 HOH HOH . E 4 HOH A 44 354 119 HOH HOH . E 4 HOH A 45 355 126 HOH HOH . E 4 HOH A 46 356 127 HOH HOH . E 4 HOH A 47 357 129 HOH HOH . E 4 HOH A 48 358 130 HOH HOH . E 4 HOH A 49 359 136 HOH HOH . E 4 HOH A 50 360 139 HOH HOH . E 4 HOH A 51 361 143 HOH HOH . E 4 HOH A 52 362 147 HOH HOH . E 4 HOH A 53 363 149 HOH HOH . E 4 HOH A 54 364 157 HOH HOH . E 4 HOH A 55 365 161 HOH HOH . E 4 HOH A 56 366 164 HOH HOH . E 4 HOH A 57 367 166 HOH HOH . E 4 HOH A 58 368 172 HOH HOH . E 4 HOH A 59 369 176 HOH HOH . E 4 HOH A 60 370 178 HOH HOH . E 4 HOH A 61 371 181 HOH HOH . E 4 HOH A 62 372 184 HOH HOH . E 4 HOH A 63 373 190 HOH HOH . E 4 HOH A 64 374 191 HOH HOH . E 4 HOH A 65 375 197 HOH HOH . E 4 HOH A 66 376 200 HOH HOH . E 4 HOH A 67 377 202 HOH HOH . E 4 HOH A 68 378 203 HOH HOH . E 4 HOH A 69 379 205 HOH HOH . E 4 HOH A 70 380 207 HOH HOH . E 4 HOH A 71 381 209 HOH HOH . E 4 HOH A 72 382 212 HOH HOH . E 4 HOH A 73 383 214 HOH HOH . E 4 HOH A 74 384 218 HOH HOH . E 4 HOH A 75 385 219 HOH HOH . E 4 HOH A 76 386 221 HOH HOH . E 4 HOH A 77 387 222 HOH HOH . E 4 HOH A 78 388 229 HOH HOH . E 4 HOH A 79 389 232 HOH HOH . E 4 HOH A 80 390 236 HOH HOH . E 4 HOH A 81 391 241 HOH HOH . E 4 HOH A 82 392 242 HOH HOH . E 4 HOH A 83 393 245 HOH HOH . E 4 HOH A 84 394 253 HOH HOH . E 4 HOH A 85 395 254 HOH HOH . E 4 HOH A 86 396 258 HOH HOH . E 4 HOH A 87 397 259 HOH HOH . E 4 HOH A 88 398 263 HOH HOH . E 4 HOH A 89 399 265 HOH HOH . E 4 HOH A 90 400 269 HOH HOH . E 4 HOH A 91 401 271 HOH HOH . E 4 HOH A 92 402 272 HOH HOH . E 4 HOH A 93 403 275 HOH HOH . E 4 HOH A 94 404 276 HOH HOH . E 4 HOH A 95 405 281 HOH HOH . E 4 HOH A 96 406 282 HOH HOH . E 4 HOH A 97 407 285 HOH HOH . E 4 HOH A 98 408 286 HOH HOH . E 4 HOH A 99 409 288 HOH HOH . E 4 HOH A 100 410 291 HOH HOH . E 4 HOH A 101 411 299 HOH HOH . E 4 HOH A 102 412 300 HOH HOH . E 4 HOH A 103 413 302 HOH HOH . E 4 HOH A 104 414 306 HOH HOH . E 4 HOH A 105 415 308 HOH HOH . E 4 HOH A 106 416 311 HOH HOH . E 4 HOH A 107 417 313 HOH HOH . E 4 HOH A 108 418 314 HOH HOH . E 4 HOH A 109 419 315 HOH HOH . E 4 HOH A 110 420 320 HOH HOH . E 4 HOH A 111 421 328 HOH HOH . E 4 HOH A 112 422 332 HOH HOH . E 4 HOH A 113 423 333 HOH HOH . E 4 HOH A 114 424 335 HOH HOH . E 4 HOH A 115 425 341 HOH HOH . E 4 HOH A 116 426 346 HOH HOH . E 4 HOH A 117 427 352 HOH HOH . E 4 HOH A 118 428 354 HOH HOH . E 4 HOH A 119 429 355 HOH HOH . E 4 HOH A 120 430 356 HOH HOH . E 4 HOH A 121 431 358 HOH HOH . E 4 HOH A 122 432 367 HOH HOH . E 4 HOH A 123 433 375 HOH HOH . E 4 HOH A 124 434 379 HOH HOH . E 4 HOH A 125 435 380 HOH HOH . E 4 HOH A 126 436 388 HOH HOH . E 4 HOH A 127 437 390 HOH HOH . E 4 HOH A 128 438 391 HOH HOH . E 4 HOH A 129 439 394 HOH HOH . E 4 HOH A 130 440 400 HOH HOH . E 4 HOH A 131 441 408 HOH HOH . E 4 HOH A 132 442 419 HOH HOH . E 4 HOH A 133 443 425 HOH HOH . E 4 HOH A 134 444 430 HOH HOH . E 4 HOH A 135 445 435 HOH HOH . E 4 HOH A 136 446 436 HOH HOH . E 4 HOH A 137 447 438 HOH HOH . E 4 HOH A 138 448 444 HOH HOH . E 4 HOH A 139 449 446 HOH HOH . E 4 HOH A 140 450 448 HOH HOH . E 4 HOH A 141 451 449 HOH HOH . E 4 HOH A 142 452 450 HOH HOH . E 4 HOH A 143 453 451 HOH HOH . E 4 HOH A 144 454 452 HOH HOH . E 4 HOH A 145 455 454 HOH HOH . E 4 HOH A 146 456 456 HOH HOH . E 4 HOH A 147 457 457 HOH HOH . E 4 HOH A 148 458 460 HOH HOH . E 4 HOH A 149 459 461 HOH HOH . E 4 HOH A 150 460 463 HOH HOH . E 4 HOH A 151 461 464 HOH HOH . E 4 HOH A 152 462 466 HOH HOH . E 4 HOH A 153 463 467 HOH HOH . E 4 HOH A 154 464 468 HOH HOH . F 4 HOH B 1 266 1 HOH HOH . F 4 HOH B 2 267 3 HOH HOH . F 4 HOH B 3 268 4 HOH HOH . F 4 HOH B 4 269 6 HOH HOH . F 4 HOH B 5 270 9 HOH HOH . F 4 HOH B 6 271 11 HOH HOH . F 4 HOH B 7 272 12 HOH HOH . F 4 HOH B 8 273 13 HOH HOH . F 4 HOH B 9 274 15 HOH HOH . F 4 HOH B 10 275 17 HOH HOH . F 4 HOH B 11 276 18 HOH HOH . F 4 HOH B 12 277 22 HOH HOH . F 4 HOH B 13 278 24 HOH HOH . F 4 HOH B 14 279 25 HOH HOH . F 4 HOH B 15 280 29 HOH HOH . F 4 HOH B 16 281 30 HOH HOH . F 4 HOH B 17 282 31 HOH HOH . F 4 HOH B 18 283 34 HOH HOH . F 4 HOH B 19 284 38 HOH HOH . F 4 HOH B 20 285 39 HOH HOH . F 4 HOH B 21 286 40 HOH HOH . F 4 HOH B 22 287 41 HOH HOH . F 4 HOH B 23 288 42 HOH HOH . F 4 HOH B 24 289 44 HOH HOH . F 4 HOH B 25 290 46 HOH HOH . F 4 HOH B 26 291 48 HOH HOH . F 4 HOH B 27 292 53 HOH HOH . F 4 HOH B 28 293 55 HOH HOH . F 4 HOH B 29 294 57 HOH HOH . F 4 HOH B 30 295 59 HOH HOH . F 4 HOH B 31 296 65 HOH HOH . F 4 HOH B 32 297 68 HOH HOH . F 4 HOH B 33 298 69 HOH HOH . F 4 HOH B 34 299 70 HOH HOH . F 4 HOH B 35 300 73 HOH HOH . F 4 HOH B 36 301 75 HOH HOH . F 4 HOH B 37 302 80 HOH HOH . F 4 HOH B 38 303 81 HOH HOH . F 4 HOH B 39 304 83 HOH HOH . F 4 HOH B 40 305 86 HOH HOH . F 4 HOH B 41 306 90 HOH HOH . F 4 HOH B 42 307 91 HOH HOH . F 4 HOH B 43 308 93 HOH HOH . F 4 HOH B 44 309 95 HOH HOH . F 4 HOH B 45 310 96 HOH HOH . F 4 HOH B 46 311 97 HOH HOH . F 4 HOH B 47 312 98 HOH HOH . F 4 HOH B 48 313 100 HOH HOH . F 4 HOH B 49 314 101 HOH HOH . F 4 HOH B 50 315 103 HOH HOH . F 4 HOH B 51 316 104 HOH HOH . F 4 HOH B 52 317 107 HOH HOH . F 4 HOH B 53 318 109 HOH HOH . F 4 HOH B 54 319 110 HOH HOH . F 4 HOH B 55 320 112 HOH HOH . F 4 HOH B 56 321 114 HOH HOH . F 4 HOH B 57 322 115 HOH HOH . F 4 HOH B 58 323 116 HOH HOH . F 4 HOH B 59 324 120 HOH HOH . F 4 HOH B 60 325 121 HOH HOH . F 4 HOH B 61 326 123 HOH HOH . F 4 HOH B 62 327 132 HOH HOH . F 4 HOH B 63 328 135 HOH HOH . F 4 HOH B 64 329 137 HOH HOH . F 4 HOH B 65 330 141 HOH HOH . F 4 HOH B 66 331 142 HOH HOH . F 4 HOH B 67 332 144 HOH HOH . F 4 HOH B 68 333 146 HOH HOH . F 4 HOH B 69 334 148 HOH HOH . F 4 HOH B 70 335 151 HOH HOH . F 4 HOH B 71 336 152 HOH HOH . F 4 HOH B 72 337 154 HOH HOH . F 4 HOH B 73 338 155 HOH HOH . F 4 HOH B 74 339 159 HOH HOH . F 4 HOH B 75 340 163 HOH HOH . F 4 HOH B 76 341 165 HOH HOH . F 4 HOH B 77 342 167 HOH HOH . F 4 HOH B 78 343 169 HOH HOH . F 4 HOH B 79 344 170 HOH HOH . F 4 HOH B 80 345 173 HOH HOH . F 4 HOH B 81 346 174 HOH HOH . F 4 HOH B 82 347 177 HOH HOH . F 4 HOH B 83 348 179 HOH HOH . F 4 HOH B 84 349 182 HOH HOH . F 4 HOH B 85 350 183 HOH HOH . F 4 HOH B 86 351 185 HOH HOH . F 4 HOH B 87 352 187 HOH HOH . F 4 HOH B 88 353 188 HOH HOH . F 4 HOH B 89 354 193 HOH HOH . F 4 HOH B 90 355 195 HOH HOH . F 4 HOH B 91 356 196 HOH HOH . F 4 HOH B 92 357 201 HOH HOH . F 4 HOH B 93 358 206 HOH HOH . F 4 HOH B 94 359 208 HOH HOH . F 4 HOH B 95 360 210 HOH HOH . F 4 HOH B 96 361 224 HOH HOH . F 4 HOH B 97 362 225 HOH HOH . F 4 HOH B 98 363 230 HOH HOH . F 4 HOH B 99 364 239 HOH HOH . F 4 HOH B 100 365 240 HOH HOH . F 4 HOH B 101 366 264 HOH HOH . F 4 HOH B 102 367 266 HOH HOH . F 4 HOH B 103 368 270 HOH HOH . F 4 HOH B 104 369 273 HOH HOH . F 4 HOH B 105 370 274 HOH HOH . F 4 HOH B 106 371 277 HOH HOH . F 4 HOH B 107 372 283 HOH HOH . F 4 HOH B 108 373 287 HOH HOH . F 4 HOH B 109 374 292 HOH HOH . F 4 HOH B 110 375 294 HOH HOH . F 4 HOH B 111 376 298 HOH HOH . F 4 HOH B 112 377 304 HOH HOH . F 4 HOH B 113 378 309 HOH HOH . F 4 HOH B 114 379 310 HOH HOH . F 4 HOH B 115 380 325 HOH HOH . F 4 HOH B 116 381 327 HOH HOH . F 4 HOH B 117 382 329 HOH HOH . F 4 HOH B 118 383 331 HOH HOH . F 4 HOH B 119 384 353 HOH HOH . F 4 HOH B 120 385 373 HOH HOH . F 4 HOH B 121 386 378 HOH HOH . F 4 HOH B 122 387 399 HOH HOH . F 4 HOH B 123 388 409 HOH HOH . F 4 HOH B 124 389 412 HOH HOH . F 4 HOH B 125 390 413 HOH HOH . F 4 HOH B 126 391 416 HOH HOH . F 4 HOH B 127 392 417 HOH HOH . F 4 HOH B 128 393 418 HOH HOH . F 4 HOH B 129 394 424 HOH HOH . F 4 HOH B 130 395 427 HOH HOH . F 4 HOH B 131 396 429 HOH HOH . F 4 HOH B 132 397 433 HOH HOH . F 4 HOH B 133 398 437 HOH HOH . F 4 HOH B 134 399 439 HOH HOH . F 4 HOH B 135 400 440 HOH HOH . F 4 HOH B 136 401 441 HOH HOH . F 4 HOH B 137 402 442 HOH HOH . F 4 HOH B 138 403 445 HOH HOH . F 4 HOH B 139 404 447 HOH HOH . F 4 HOH B 140 405 453 HOH HOH . F 4 HOH B 141 406 455 HOH HOH . F 4 HOH B 142 407 458 HOH HOH . F 4 HOH B 143 408 459 HOH HOH . F 4 HOH B 144 409 462 HOH HOH . F 4 HOH B 145 410 465 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 28.177 _atom_site.Cartn_y 103.404 _atom_site.Cartn_z 76.193 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 310 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #