data_2ENB # _model_server_result.job_id lwWeg5D3WppCDSht0ywcIA _model_server_result.datetime_utc '2024-10-20 03:48:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2enb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":142}' # _entry.id 2ENB # _exptl.entry_id 2ENB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.188 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-3',5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ENB _cell.length_a 48.77 _cell.length_b 48.77 _cell.length_c 63.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ENB _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O11 P2' _chem_comp.formula_weight 402.188 _chem_comp.id THP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2 O4P THP doub 277 n n P2 O5P THP sing 278 n n P2 O6P THP sing 279 n n P2 O5' THP sing 280 n n O5P HOP5 THP sing 281 n n O6P HOP6 THP sing 282 n n P1 O1P THP doub 283 n n P1 O2P THP sing 284 n n P1 O3P THP sing 285 n n P1 O3' THP sing 286 n n O2P HOP2 THP sing 287 n n O3P HOP3 THP sing 288 n n O5' C5' THP sing 289 n n C5' C4' THP sing 290 n n C5' "H5'1" THP sing 291 n n C5' "H5'2" THP sing 292 n n C4' O4' THP sing 293 n n C4' C3' THP sing 294 n n C4' H4' THP sing 295 n n O4' C1' THP sing 296 n n C3' O3' THP sing 297 n n C3' C2' THP sing 298 n n C3' H3' THP sing 299 n n C2' C1' THP sing 300 n n C2' "H2'1" THP sing 301 n n C2' "H2'2" THP sing 302 n n C1' N1 THP sing 303 n n C1' H1' THP sing 304 n n N1 C2 THP sing 305 n n N1 C6 THP sing 306 n n C2 O2 THP doub 307 n n C2 N3 THP sing 308 n n N3 C4 THP sing 309 n n N3 H3 THP sing 310 n n C4 O4 THP doub 311 n n C4 C5 THP sing 312 n n C5 C5M THP sing 313 n n C5 C6 THP doub 314 n n C5M H51 THP sing 315 n n C5M H52 THP sing 316 n n C5M H53 THP sing 317 n n C6 H6 THP sing 318 n n # _atom_sites.entry_id 2ENB _atom_sites.fract_transf_matrix[1][1] 0.020504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 THP A 1 142 142 THP PTP . C 3 HOH A 1 143 143 HOH HOH . C 3 HOH A 2 144 144 HOH HOH . C 3 HOH A 3 145 145 HOH HOH . C 3 HOH A 4 146 146 HOH HOH . C 3 HOH A 5 147 147 HOH HOH . C 3 HOH A 6 148 148 HOH HOH . C 3 HOH A 7 149 149 HOH HOH . C 3 HOH A 8 150 150 HOH HOH . C 3 HOH A 9 151 151 HOH HOH . C 3 HOH A 10 152 152 HOH HOH . C 3 HOH A 11 153 153 HOH HOH . C 3 HOH A 12 154 154 HOH HOH . C 3 HOH A 13 155 155 HOH HOH . C 3 HOH A 14 156 156 HOH HOH . C 3 HOH A 15 157 157 HOH HOH . C 3 HOH A 16 158 158 HOH HOH . C 3 HOH A 17 159 159 HOH HOH . C 3 HOH A 18 160 160 HOH HOH . C 3 HOH A 19 161 161 HOH HOH . C 3 HOH A 20 162 162 HOH HOH . C 3 HOH A 21 163 163 HOH HOH . C 3 HOH A 22 164 164 HOH HOH . C 3 HOH A 23 165 165 HOH HOH . C 3 HOH A 24 166 166 HOH HOH . C 3 HOH A 25 167 167 HOH HOH . C 3 HOH A 26 168 168 HOH HOH . C 3 HOH A 27 169 169 HOH HOH . C 3 HOH A 28 170 170 HOH HOH . C 3 HOH A 29 171 171 HOH HOH . C 3 HOH A 30 172 172 HOH HOH . C 3 HOH A 31 173 173 HOH HOH . C 3 HOH A 32 174 174 HOH HOH . C 3 HOH A 33 175 175 HOH HOH . C 3 HOH A 34 176 176 HOH HOH . C 3 HOH A 35 177 177 HOH HOH . C 3 HOH A 36 178 178 HOH HOH . C 3 HOH A 37 179 179 HOH HOH . C 3 HOH A 38 180 180 HOH HOH . C 3 HOH A 39 181 181 HOH HOH . C 3 HOH A 40 182 182 HOH HOH . C 3 HOH A 41 183 183 HOH HOH . C 3 HOH A 42 184 184 HOH HOH . C 3 HOH A 43 185 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2 THP . . . B 2 6.282 13.972 21.07 1 45.64 ? P2 THP 142 A 1 HETATM 2 O O4P THP . . . B 2 5.014 13.894 20.306 1 46.76 ? O4P THP 142 A 1 HETATM 3 O O5P THP . . . B 2 7.381 14.817 20.529 1 43.84 ? O5P THP 142 A 1 HETATM 4 O O6P THP . . . B 2 6.91 12.492 21.19 1 46.89 ? O6P THP 142 A 1 HETATM 5 P P1 THP . . . B 2 4.929 11.72 27.266 1 46.57 ? P1 THP 142 A 1 HETATM 6 O O1P THP . . . B 2 3.718 10.879 27.111 1 45.45 ? O1P THP 142 A 1 HETATM 7 O O2P THP . . . B 2 6.209 11.478 26.566 1 44.19 ? O2P THP 142 A 1 HETATM 8 O O3P THP . . . B 2 5.219 11.803 28.848 1 47.52 ? O3P THP 142 A 1 HETATM 9 O O5' THP . . . B 2 5.972 14.403 22.579 1 43.23 ? O5' THP 142 A 1 HETATM 10 C C5' THP . . . B 2 4.894 13.879 23.358 1 41.01 ? C5' THP 142 A 1 HETATM 11 C C4' THP . . . B 2 5.168 14.15 24.818 1 41.65 ? C4' THP 142 A 1 HETATM 12 O O4' THP . . . B 2 5.389 15.548 25.025 1 42.11 ? O4' THP 142 A 1 HETATM 13 C C3' THP . . . B 2 4.028 13.777 25.77 1 42.52 ? C3' THP 142 A 1 HETATM 14 O O3' THP . . . B 2 4.528 13.291 27.054 1 44.77 ? O3' THP 142 A 1 HETATM 15 C C2' THP . . . B 2 3.235 15.103 25.87 1 39.73 ? C2' THP 142 A 1 HETATM 16 C C1' THP . . . B 2 4.434 16.085 25.954 1 38.34 ? C1' THP 142 A 1 HETATM 17 N N1 THP . . . B 2 4.009 17.433 25.486 1 33.54 ? N1 THP 142 A 1 HETATM 18 C C2 THP . . . B 2 3.574 18.329 26.414 1 31.49 ? C2 THP 142 A 1 HETATM 19 O O2 THP . . . B 2 3.744 18.107 27.602 1 31.16 ? O2 THP 142 A 1 HETATM 20 N N3 THP . . . B 2 2.967 19.475 25.986 1 31.55 ? N3 THP 142 A 1 HETATM 21 C C4 THP . . . B 2 2.766 19.757 24.656 1 31.96 ? C4 THP 142 A 1 HETATM 22 O O4 THP . . . B 2 2.192 20.795 24.348 1 31.75 ? O4 THP 142 A 1 HETATM 23 C C5 THP . . . B 2 3.218 18.827 23.71 1 32.7 ? C5 THP 142 A 1 HETATM 24 C C5M THP . . . B 2 3.051 19.108 22.239 1 32.46 ? C5M THP 142 A 1 HETATM 25 C C6 THP . . . B 2 3.819 17.657 24.15 1 33.59 ? C6 THP 142 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #