data_2ENX # _model_server_result.job_id AxspE1XoXsUrn2yRy1yaDA _model_server_result.datetime_utc '2024-11-23 12:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2enx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2ENX # _exptl.entry_id 2ENX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ENX _cell.length_a 181.96 _cell.length_b 181.96 _cell.length_c 132.61 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ENX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_455 y-2/3,x+2/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -181.96 105.054655 88.406667 3 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 8 A HIS 9 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A OD2 ASP 12 A ASP 13 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A OD2 ASP 14 A ASP 15 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 A OD1 ASP 76 A ASP 77 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc5 A OD2 ASP 76 A ASP 77 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 A NE2 HIS 98 A HIS 99 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc7 A OD2 ASP 150 A ASP 151 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc8 C MN MN . A MN 401 1_555 F O5 2PN . A 2PN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc9 D MN MN . A MN 402 1_555 F O4 2PN . A 2PN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 E MG MG . A MG 501 1_555 F O6 2PN . A 2PN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc11 E MG MG . A MG 501 1_555 F O3 2PN . A 2PN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc12 E MG MG . A MG 501 1_555 M O HOH . A HOH 1099 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc13 B NE2 HIS 8 B HIS 9 1_555 H MN MN . B MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc14 B OD2 ASP 12 B ASP 13 1_555 H MN MN . B MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc15 B OD2 ASP 14 B ASP 15 1_555 I MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc16 B OD1 ASP 76 B ASP 77 1_555 H MN MN . B MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc17 B OD2 ASP 76 B ASP 77 1_555 I MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc18 B NE2 HIS 98 B HIS 99 1_555 I MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc19 B OD2 ASP 150 B ASP 151 1_555 I MN MN . B MN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc20 H MN MN . B MN 403 1_555 K O5 2PN . B 2PN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc21 I MN MN . B MN 404 1_555 K O4 2PN . B 2PN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc22 J MG MG . B MG 502 1_555 K O6 2PN . B 2PN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc23 J MG MG . B MG 502 1_555 K O3 2PN . B 2PN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ENX _atom_sites.fract_transf_matrix[1][1] 0.005496 _atom_sites.fract_transf_matrix[1][2] 0.003173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 401 401 MN MN . D 2 MN A 1 402 402 MN MN . E 3 MG A 1 501 501 MG MG . F 4 2PN A 1 1001 1001 2PN 2PN . G 5 TRP A 1 1031 1031 TRP TRP . H 2 MN B 1 403 403 MN MN . I 2 MN B 1 404 404 MN MN . J 3 MG B 1 502 502 MG MG . K 4 2PN B 1 1002 1002 2PN 2PN . L 5 TRP B 1 2031 2031 TRP TRP . M 6 HOH A 1 1032 2 HOH HOH . M 6 HOH A 2 1033 3 HOH HOH . M 6 HOH A 3 1034 6 HOH HOH . M 6 HOH A 4 1035 8 HOH HOH . M 6 HOH A 5 1036 9 HOH HOH . M 6 HOH A 6 1037 11 HOH HOH . M 6 HOH A 7 1038 15 HOH HOH . M 6 HOH A 8 1039 17 HOH HOH . M 6 HOH A 9 1040 20 HOH HOH . M 6 HOH A 10 1041 23 HOH HOH . M 6 HOH A 11 1042 26 HOH HOH . M 6 HOH A 12 1043 31 HOH HOH . M 6 HOH A 13 1044 34 HOH HOH . M 6 HOH A 14 1045 39 HOH HOH . M 6 HOH A 15 1046 41 HOH HOH . M 6 HOH A 16 1047 44 HOH HOH . M 6 HOH A 17 1048 47 HOH HOH . M 6 HOH A 18 1049 48 HOH HOH . M 6 HOH A 19 1050 49 HOH HOH . M 6 HOH A 20 1051 51 HOH HOH . M 6 HOH A 21 1052 52 HOH HOH . M 6 HOH A 22 1053 58 HOH HOH . M 6 HOH A 23 1054 59 HOH HOH . M 6 HOH A 24 1055 60 HOH HOH . M 6 HOH A 25 1056 65 HOH HOH . M 6 HOH A 26 1057 69 HOH HOH . M 6 HOH A 27 1058 70 HOH HOH . M 6 HOH A 28 1059 72 HOH HOH . M 6 HOH A 29 1060 74 HOH HOH . M 6 HOH A 30 1061 80 HOH HOH . M 6 HOH A 31 1062 81 HOH HOH . M 6 HOH A 32 1063 82 HOH HOH . M 6 HOH A 33 1064 86 HOH HOH . M 6 HOH A 34 1065 87 HOH HOH . M 6 HOH A 35 1066 89 HOH HOH . M 6 HOH A 36 1067 98 HOH HOH . M 6 HOH A 37 1068 100 HOH HOH . M 6 HOH A 38 1069 101 HOH HOH . M 6 HOH A 39 1070 109 HOH HOH . M 6 HOH A 40 1071 110 HOH HOH . M 6 HOH A 41 1072 114 HOH HOH . M 6 HOH A 42 1073 115 HOH HOH . M 6 HOH A 43 1074 116 HOH HOH . M 6 HOH A 44 1075 119 HOH HOH . M 6 HOH A 45 1076 120 HOH HOH . M 6 HOH A 46 1077 125 HOH HOH . M 6 HOH A 47 1078 127 HOH HOH . M 6 HOH A 48 1079 137 HOH HOH . M 6 HOH A 49 1080 144 HOH HOH . M 6 HOH A 50 1081 147 HOH HOH . M 6 HOH A 51 1082 148 HOH HOH . M 6 HOH A 52 1083 154 HOH HOH . M 6 HOH A 53 1084 158 HOH HOH . M 6 HOH A 54 1085 159 HOH HOH . M 6 HOH A 55 1086 161 HOH HOH . M 6 HOH A 56 1087 164 HOH HOH . M 6 HOH A 57 1088 166 HOH HOH . M 6 HOH A 58 1089 169 HOH HOH . M 6 HOH A 59 1090 171 HOH HOH . M 6 HOH A 60 1091 175 HOH HOH . M 6 HOH A 61 1092 179 HOH HOH . M 6 HOH A 62 1093 180 HOH HOH . M 6 HOH A 63 1094 184 HOH HOH . M 6 HOH A 64 1095 186 HOH HOH . M 6 HOH A 65 1096 188 HOH HOH . M 6 HOH A 66 1097 190 HOH HOH . M 6 HOH A 67 1098 194 HOH HOH . M 6 HOH A 68 1099 195 HOH HOH . M 6 HOH A 69 1100 203 HOH HOH . N 6 HOH B 1 2032 4 HOH HOH . N 6 HOH B 2 2033 10 HOH HOH . N 6 HOH B 3 2034 12 HOH HOH . N 6 HOH B 4 2035 13 HOH HOH . N 6 HOH B 5 2036 16 HOH HOH . N 6 HOH B 6 2037 19 HOH HOH . N 6 HOH B 7 2038 22 HOH HOH . N 6 HOH B 8 2039 24 HOH HOH . N 6 HOH B 9 2040 25 HOH HOH . N 6 HOH B 10 2041 27 HOH HOH . N 6 HOH B 11 2042 29 HOH HOH . N 6 HOH B 12 2043 32 HOH HOH . N 6 HOH B 13 2044 35 HOH HOH . N 6 HOH B 14 2045 38 HOH HOH . N 6 HOH B 15 2046 43 HOH HOH . N 6 HOH B 16 2047 46 HOH HOH . N 6 HOH B 17 2048 50 HOH HOH . N 6 HOH B 18 2049 53 HOH HOH . N 6 HOH B 19 2050 54 HOH HOH . N 6 HOH B 20 2051 56 HOH HOH . N 6 HOH B 21 2052 64 HOH HOH . N 6 HOH B 22 2053 66 HOH HOH . N 6 HOH B 23 2054 67 HOH HOH . N 6 HOH B 24 2055 68 HOH HOH . N 6 HOH B 25 2056 71 HOH HOH . N 6 HOH B 26 2057 73 HOH HOH . N 6 HOH B 27 2058 75 HOH HOH . N 6 HOH B 28 2059 76 HOH HOH . N 6 HOH B 29 2060 77 HOH HOH . N 6 HOH B 30 2061 78 HOH HOH . N 6 HOH B 31 2062 90 HOH HOH . N 6 HOH B 32 2063 91 HOH HOH . N 6 HOH B 33 2064 92 HOH HOH . N 6 HOH B 34 2065 93 HOH HOH . N 6 HOH B 35 2066 95 HOH HOH . N 6 HOH B 36 2067 96 HOH HOH . N 6 HOH B 37 2068 97 HOH HOH . N 6 HOH B 38 2069 99 HOH HOH . N 6 HOH B 39 2070 102 HOH HOH . N 6 HOH B 40 2071 105 HOH HOH . N 6 HOH B 41 2072 106 HOH HOH . N 6 HOH B 42 2073 107 HOH HOH . N 6 HOH B 43 2074 108 HOH HOH . N 6 HOH B 44 2075 111 HOH HOH . N 6 HOH B 45 2076 112 HOH HOH . N 6 HOH B 46 2077 113 HOH HOH . N 6 HOH B 47 2078 117 HOH HOH . N 6 HOH B 48 2079 118 HOH HOH . N 6 HOH B 49 2080 121 HOH HOH . N 6 HOH B 50 2081 122 HOH HOH . N 6 HOH B 51 2082 123 HOH HOH . N 6 HOH B 52 2083 124 HOH HOH . N 6 HOH B 53 2084 126 HOH HOH . N 6 HOH B 54 2085 129 HOH HOH . N 6 HOH B 55 2086 130 HOH HOH . N 6 HOH B 56 2087 134 HOH HOH . N 6 HOH B 57 2088 135 HOH HOH . N 6 HOH B 58 2089 138 HOH HOH . N 6 HOH B 59 2090 139 HOH HOH . N 6 HOH B 60 2091 140 HOH HOH . N 6 HOH B 61 2092 141 HOH HOH . N 6 HOH B 62 2093 145 HOH HOH . N 6 HOH B 63 2094 149 HOH HOH . N 6 HOH B 64 2095 151 HOH HOH . N 6 HOH B 65 2096 152 HOH HOH . N 6 HOH B 66 2097 153 HOH HOH . N 6 HOH B 67 2098 155 HOH HOH . N 6 HOH B 68 2099 156 HOH HOH . N 6 HOH B 69 2100 157 HOH HOH . N 6 HOH B 70 2101 162 HOH HOH . N 6 HOH B 71 2102 165 HOH HOH . N 6 HOH B 72 2103 170 HOH HOH . N 6 HOH B 73 2104 172 HOH HOH . N 6 HOH B 74 2105 173 HOH HOH . N 6 HOH B 75 2106 174 HOH HOH . N 6 HOH B 76 2107 176 HOH HOH . N 6 HOH B 77 2108 177 HOH HOH . N 6 HOH B 78 2109 178 HOH HOH . N 6 HOH B 79 2110 181 HOH HOH . N 6 HOH B 80 2111 182 HOH HOH . N 6 HOH B 81 2112 183 HOH HOH . N 6 HOH B 82 2113 185 HOH HOH . N 6 HOH B 83 2114 187 HOH HOH . N 6 HOH B 84 2115 189 HOH HOH . N 6 HOH B 85 2116 201 HOH HOH . N 6 HOH B 86 2117 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -55.431 _atom_site.Cartn_y 82.89 _atom_site.Cartn_z 46.453 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #