data_2EQD # _model_server_result.job_id Q3JUCnmNIdDS8BFlJfbuAA _model_server_result.datetime_utc '2024-11-17 08:06:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 2EQD # _exptl.entry_id 2EQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EQD _cell.length_a 50.486 _cell.length_b 59.299 _cell.length_c 168.709 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 BGC BGC C1 O1 . O4 HO4 . sing 5 ? 2 6 5 BGC BGC C1 O1 . O4 HO4 . sing 6 ? 2 7 6 BGC BGC C1 O1 . O4 HO4 . sing 7 ? 2 8 7 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC A 800 CE8 2 n B BGC 2 B 2 BGC A 800 CE8 2 n B BGC 3 B 3 BGC A 800 CE8 2 n B BGC 4 B 4 BGC A 800 CE8 2 n B BGC 5 B 5 BGC A 800 CE8 2 n B BGC 6 B 6 BGC A 800 CE8 2 n B BGC 7 B 7 BGC A 800 CE8 2 n B BGC 8 B 8 BGC A 800 CE8 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 sing covale ? covale2 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing covale ? covale3 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale4 B O4 BGC . B BGC 4 1_555 B C1 BGC . B BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 sing covale ? covale5 B O4 BGC . B BGC 5 1_555 B C1 BGC . B BGC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale6 B O4 BGC . B BGC 6 1_555 B C1 BGC . B BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 sing covale ? covale7 B O4 BGC . B BGC 7 1_555 B C1 BGC . B BGC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing metalc ? metalc1 A OD2 ASP 35 A ASP 35 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc2 A OE1 GLU 54 A GLU 54 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A OE2 GLU 54 A GLU 54 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A OE2 GLU 126 A GLU 126 4_565 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc5 A OE1 GLU 126 A GLU 126 4_565 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc6 A O ASP 150 A ASP 150 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc7 A OD1 ASP 153 A ASP 153 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 A OD2 ASP 153 A ASP 153 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc9 A O TYR 155 A TYR 155 1_555 G CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc10 A O ALA 395 A ALA 395 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc11 A OE1 GLU 401 A GLU 401 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc12 A OE2 GLU 401 A GLU 401 1_555 F ZN ZN . A ZN 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 2EQD _atom_sites.fract_transf_matrix[1][1] 0.019807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 600 600 GOL GOL . D 3 GOL A 1 601 601 GOL GOL . E 3 GOL A 1 602 602 GOL GOL . F 4 ZN A 1 700 700 ZN ZN2 . G 5 CA A 1 701 701 CA CA2 . H 6 CL A 1 702 702 CL CL1 . I 7 HOH A 1 801 2 HOH WAT . I 7 HOH A 2 802 5 HOH WAT . I 7 HOH A 3 803 8 HOH WAT . I 7 HOH A 4 804 10 HOH WAT . I 7 HOH A 5 805 12 HOH WAT . I 7 HOH A 6 806 13 HOH WAT . I 7 HOH A 7 807 18 HOH WAT . I 7 HOH A 8 808 23 HOH WAT . I 7 HOH A 9 809 27 HOH WAT . I 7 HOH A 10 810 32 HOH WAT . I 7 HOH A 11 811 33 HOH WAT . I 7 HOH A 12 812 34 HOH WAT . I 7 HOH A 13 813 39 HOH WAT . I 7 HOH A 14 814 70 HOH WAT . I 7 HOH A 15 815 91 HOH WAT . I 7 HOH A 16 816 92 HOH WAT . I 7 HOH A 17 817 95 HOH WAT . I 7 HOH A 18 818 99 HOH WAT . I 7 HOH A 19 819 102 HOH WAT . I 7 HOH A 20 820 103 HOH WAT . I 7 HOH A 21 821 105 HOH WAT . I 7 HOH A 22 822 106 HOH WAT . I 7 HOH A 23 823 109 HOH WAT . I 7 HOH A 24 824 111 HOH WAT . I 7 HOH A 25 825 116 HOH WAT . I 7 HOH A 26 826 119 HOH WAT . I 7 HOH A 27 827 121 HOH WAT . I 7 HOH A 28 828 122 HOH WAT . I 7 HOH A 29 829 123 HOH WAT . I 7 HOH A 30 830 124 HOH WAT . I 7 HOH A 31 831 126 HOH WAT . I 7 HOH A 32 832 129 HOH WAT . I 7 HOH A 33 833 132 HOH WAT . I 7 HOH A 34 834 138 HOH WAT . I 7 HOH A 35 835 142 HOH WAT . I 7 HOH A 36 836 143 HOH WAT . I 7 HOH A 37 837 144 HOH WAT . I 7 HOH A 38 838 153 HOH WAT . I 7 HOH A 39 839 159 HOH WAT . I 7 HOH A 40 840 162 HOH WAT . I 7 HOH A 41 841 163 HOH WAT . I 7 HOH A 42 842 164 HOH WAT . I 7 HOH A 43 843 169 HOH WAT . I 7 HOH A 44 844 170 HOH WAT . I 7 HOH A 45 845 172 HOH WAT . I 7 HOH A 46 846 173 HOH WAT . I 7 HOH A 47 847 175 HOH WAT . I 7 HOH A 48 848 179 HOH WAT . I 7 HOH A 49 849 190 HOH WAT . I 7 HOH A 50 850 194 HOH WAT . I 7 HOH A 51 851 195 HOH WAT . I 7 HOH A 52 852 202 HOH WAT . I 7 HOH A 53 853 203 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 13.692 40.205 6.124 1 51 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . D 3 12.756 39.084 5.875 1 51.49 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . D 3 14.937 39.746 6.829 1 49.08 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . D 3 16.009 40.749 6.612 1 47.5 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . D 3 14.503 39.655 8.26 1 47.29 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . D 3 15.514 38.969 8.93 1 45.69 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #