data_2ESS
#
_model_server_result.job_id            JUqumrZlqroXVZyEeaYbpQ 
_model_server_result.datetime_utc      '2025-03-05 20:21:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ess 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":256}' 
#
_entry.id    2ESS 
#
_exptl.entry_id    2ESS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ESS 
_cell.length_a            91.15 
_cell.length_b            91.15 
_cell.length_c            64.77 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ESS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 43.18 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 2 A MSE 1 1_555 A N SER 3 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C THR 27 A THR 26 1_555 A N MSE 28 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C MSE 28 A MSE 27 1_555 A N GLY 29 A GLY 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C GLU 71 A GLU 70 1_555 A N MSE 72 A MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale5 A C MSE 72 A MSE 71 1_555 A N PRO 73 A PRO 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C ALA 115 A ALA 114 1_555 A N MSE 116 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale7 A C MSE 116 A MSE 115 1_555 A N ILE 117 A ILE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale8 A C GLU 203 A GLU 202 1_555 A N MSE 204 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale9 A C MSE 204 A MSE 203 1_555 A N ALA 205 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 A OD2 ASP 171 A ASP 170 1_555 B CA CA . A CA 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc2 A NE2 HIS 175 A HIS 174 1_555 B CA CA . A CA 248 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc3 B CA CA . A CA 248 1_555 K O HOH . A HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     2ESS 
_atom_sites.fract_transf_matrix[1][1]    0.01097 
_atom_sites.fract_transf_matrix[1][2]    0.00633 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 248 1 CA CA . 
C 3 CL A 1 249 2 CL CL . 
D 3 CL A 1 250 3 CL CL . 
E 3 CL A 1 251 4 CL CL . 
F 4 MPD A 1 252 5 MPD MPD . 
G 4 MPD A 1 253 6 MPD MPD . 
H 4 MPD A 1 254 7 MPD MPD . 
I 4 MPD A 1 255 8 MPD MPD . 
J 4 MPD A 1 256 9 MPD MPD . 
K 5 HOH A 1 257 10 HOH HOH . 
K 5 HOH A 2 258 11 HOH HOH . 
K 5 HOH A 3 259 12 HOH HOH . 
K 5 HOH A 4 260 13 HOH HOH . 
K 5 HOH A 5 261 14 HOH HOH . 
K 5 HOH A 6 262 15 HOH HOH . 
K 5 HOH A 7 263 16 HOH HOH . 
K 5 HOH A 8 264 17 HOH HOH . 
K 5 HOH A 9 265 18 HOH HOH . 
K 5 HOH A 10 266 19 HOH HOH . 
K 5 HOH A 11 267 20 HOH HOH . 
K 5 HOH A 12 268 21 HOH HOH . 
K 5 HOH A 13 269 22 HOH HOH . 
K 5 HOH A 14 270 23 HOH HOH . 
K 5 HOH A 15 271 24 HOH HOH . 
K 5 HOH A 16 272 25 HOH HOH . 
K 5 HOH A 17 273 26 HOH HOH . 
K 5 HOH A 18 274 27 HOH HOH . 
K 5 HOH A 19 275 28 HOH HOH . 
K 5 HOH A 20 276 29 HOH HOH . 
K 5 HOH A 21 277 30 HOH HOH . 
K 5 HOH A 22 278 31 HOH HOH . 
K 5 HOH A 23 279 32 HOH HOH . 
K 5 HOH A 24 280 33 HOH HOH . 
K 5 HOH A 25 281 34 HOH HOH . 
K 5 HOH A 26 282 35 HOH HOH . 
K 5 HOH A 27 283 36 HOH HOH . 
K 5 HOH A 28 284 37 HOH HOH . 
K 5 HOH A 29 285 38 HOH HOH . 
K 5 HOH A 30 286 39 HOH HOH . 
K 5 HOH A 31 287 40 HOH HOH . 
K 5 HOH A 32 288 41 HOH HOH . 
K 5 HOH A 33 289 42 HOH HOH . 
K 5 HOH A 34 290 43 HOH HOH . 
K 5 HOH A 35 291 44 HOH HOH . 
K 5 HOH A 36 292 45 HOH HOH . 
K 5 HOH A 37 293 46 HOH HOH . 
K 5 HOH A 38 294 47 HOH HOH . 
K 5 HOH A 39 295 48 HOH HOH . 
K 5 HOH A 40 296 49 HOH HOH . 
K 5 HOH A 41 297 50 HOH HOH . 
K 5 HOH A 42 298 51 HOH HOH . 
K 5 HOH A 43 299 52 HOH HOH . 
K 5 HOH A 44 300 53 HOH HOH . 
K 5 HOH A 45 301 54 HOH HOH . 
K 5 HOH A 46 302 55 HOH HOH . 
K 5 HOH A 47 303 56 HOH HOH . 
K 5 HOH A 48 304 57 HOH HOH . 
K 5 HOH A 49 305 58 HOH HOH . 
K 5 HOH A 50 306 59 HOH HOH . 
K 5 HOH A 51 307 60 HOH HOH . 
K 5 HOH A 52 308 61 HOH HOH . 
K 5 HOH A 53 309 62 HOH HOH . 
K 5 HOH A 54 310 63 HOH HOH . 
K 5 HOH A 55 311 64 HOH HOH . 
K 5 HOH A 56 312 65 HOH HOH . 
K 5 HOH A 57 313 66 HOH HOH . 
K 5 HOH A 58 314 67 HOH HOH . 
K 5 HOH A 59 315 68 HOH HOH . 
K 5 HOH A 60 316 69 HOH HOH . 
K 5 HOH A 61 317 70 HOH HOH . 
K 5 HOH A 62 318 71 HOH HOH . 
K 5 HOH A 63 319 72 HOH HOH . 
K 5 HOH A 64 320 73 HOH HOH . 
K 5 HOH A 65 321 74 HOH HOH . 
K 5 HOH A 66 322 75 HOH HOH . 
K 5 HOH A 67 323 76 HOH HOH . 
K 5 HOH A 68 324 77 HOH HOH . 
K 5 HOH A 69 325 78 HOH HOH . 
K 5 HOH A 70 326 79 HOH HOH . 
K 5 HOH A 71 327 80 HOH HOH . 
K 5 HOH A 72 328 81 HOH HOH . 
K 5 HOH A 73 329 82 HOH HOH . 
K 5 HOH A 74 330 83 HOH HOH . 
K 5 HOH A 75 331 84 HOH HOH . 
K 5 HOH A 76 332 85 HOH HOH . 
K 5 HOH A 77 333 86 HOH HOH . 
K 5 HOH A 78 334 87 HOH HOH . 
K 5 HOH A 79 335 88 HOH HOH . 
K 5 HOH A 80 336 89 HOH HOH . 
K 5 HOH A 81 337 90 HOH HOH . 
K 5 HOH A 82 338 91 HOH HOH . 
K 5 HOH A 83 339 92 HOH HOH . 
K 5 HOH A 84 340 93 HOH HOH . 
K 5 HOH A 85 341 94 HOH HOH . 
K 5 HOH A 86 342 95 HOH HOH . 
K 5 HOH A 87 343 96 HOH HOH . 
K 5 HOH A 88 344 97 HOH HOH . 
K 5 HOH A 89 345 98 HOH HOH . 
K 5 HOH A 90 346 99 HOH HOH . 
K 5 HOH A 91 347 100 HOH HOH . 
K 5 HOH A 92 348 101 HOH HOH . 
K 5 HOH A 93 349 102 HOH HOH . 
K 5 HOH A 94 350 103 HOH HOH . 
K 5 HOH A 95 351 104 HOH HOH . 
K 5 HOH A 96 352 105 HOH HOH . 
K 5 HOH A 97 353 106 HOH HOH . 
K 5 HOH A 98 354 107 HOH HOH . 
K 5 HOH A 99 355 108 HOH HOH . 
K 5 HOH A 100 356 109 HOH HOH . 
K 5 HOH A 101 357 110 HOH HOH . 
K 5 HOH A 102 358 111 HOH HOH . 
K 5 HOH A 103 359 112 HOH HOH . 
K 5 HOH A 104 360 113 HOH HOH . 
K 5 HOH A 105 361 114 HOH HOH . 
K 5 HOH A 106 362 115 HOH HOH . 
K 5 HOH A 107 363 116 HOH HOH . 
K 5 HOH A 108 364 117 HOH HOH . 
K 5 HOH A 109 365 118 HOH HOH . 
K 5 HOH A 110 366 119 HOH HOH . 
K 5 HOH A 111 367 120 HOH HOH . 
K 5 HOH A 112 368 121 HOH HOH . 
K 5 HOH A 113 369 122 HOH HOH . 
K 5 HOH A 114 370 123 HOH HOH . 
K 5 HOH A 115 371 124 HOH HOH . 
K 5 HOH A 116 372 125 HOH HOH . 
K 5 HOH A 117 373 126 HOH HOH . 
K 5 HOH A 118 374 127 HOH HOH . 
K 5 HOH A 119 375 128 HOH HOH . 
K 5 HOH A 120 376 129 HOH HOH . 
K 5 HOH A 121 377 130 HOH HOH . 
K 5 HOH A 122 378 131 HOH HOH . 
K 5 HOH A 123 379 132 HOH HOH . 
K 5 HOH A 124 380 133 HOH HOH . 
K 5 HOH A 125 381 134 HOH HOH . 
K 5 HOH A 126 382 135 HOH HOH . 
K 5 HOH A 127 383 136 HOH HOH . 
K 5 HOH A 128 384 137 HOH HOH . 
K 5 HOH A 129 385 138 HOH HOH . 
K 5 HOH A 130 386 139 HOH HOH . 
K 5 HOH A 131 387 140 HOH HOH . 
K 5 HOH A 132 388 141 HOH HOH . 
K 5 HOH A 133 389 142 HOH HOH . 
K 5 HOH A 134 390 143 HOH HOH . 
K 5 HOH A 135 391 144 HOH HOH . 
K 5 HOH A 136 392 145 HOH HOH . 
K 5 HOH A 137 393 146 HOH HOH . 
K 5 HOH A 138 394 147 HOH HOH . 
K 5 HOH A 139 395 148 HOH HOH . 
K 5 HOH A 140 396 149 HOH HOH . 
K 5 HOH A 141 397 150 HOH HOH . 
K 5 HOH A 142 398 151 HOH HOH . 
K 5 HOH A 143 399 152 HOH HOH . 
K 5 HOH A 144 400 153 HOH HOH . 
K 5 HOH A 145 401 154 HOH HOH . 
K 5 HOH A 146 402 155 HOH HOH . 
K 5 HOH A 147 403 156 HOH HOH . 
K 5 HOH A 148 404 157 HOH HOH . 
K 5 HOH A 149 405 158 HOH HOH . 
K 5 HOH A 150 406 159 HOH HOH . 
K 5 HOH A 151 407 160 HOH HOH . 
K 5 HOH A 152 408 161 HOH HOH . 
K 5 HOH A 153 409 162 HOH HOH . 
K 5 HOH A 154 410 163 HOH HOH . 
K 5 HOH A 155 411 164 HOH HOH . 
K 5 HOH A 156 412 165 HOH HOH . 
K 5 HOH A 157 413 166 HOH HOH . 
K 5 HOH A 158 414 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . J 4 33.332 -17.242 14.039 1 65.69 ? C1 MPD 256 A 1 
HETATM 2 C C2 MPD . . . J 4 33.446 -16.397 15.31 1 69.89 ? C2 MPD 256 A 1 
HETATM 3 O O2 MPD . . . J 4 32.475 -16.918 16.252 1 71.88 ? O2 MPD 256 A 1 
HETATM 4 C CM MPD . . . J 4 33.089 -14.944 14.997 1 64.52 ? CM MPD 256 A 1 
HETATM 5 C C3 MPD . . . J 4 34.833 -16.427 15.977 1 68.13 ? C3 MPD 256 A 1 
HETATM 6 C C4 MPD . . . J 4 35.718 -17.647 15.653 1 70.41 ? C4 MPD 256 A 1 
HETATM 7 O O4 MPD . . . J 4 35.12 -18.808 16.186 1 69.47 ? O4 MPD 256 A 1 
HETATM 8 C C5 MPD . . . J 4 37.15 -17.526 16.205 1 67.96 ? C5 MPD 256 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#