data_2EUF # _model_server_result.job_id xTI9aL_v2ojWLqApJbjrDQ _model_server_result.datetime_utc '2024-11-28 23:19:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2euf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 2EUF # _exptl.entry_id 2EUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.533 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2EUF _cell.length_a 71.146 _cell.length_b 71.146 _cell.length_c 446.876 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG1 _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 110 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 255 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.217 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H29 N7 O2' _chem_comp.formula_weight 447.533 _chem_comp.id LQQ _chem_comp.mon_nstd_flag . _chem_comp.name 6-ACETYL-8-CYCLOPENTYL-5-METHYL-2-[(5-PIPERAZIN-1-YLPYRIDIN-2-YL)AMINO]PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Palbociclib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 LQQ doub 209 n n C02 C01 LQQ sing 210 n n C02 C03 LQQ sing 211 n n C01 H011 LQQ sing 212 n n C01 H012 LQQ sing 213 n n C01 H013 LQQ sing 214 n n C03 C04 LQQ doub 215 n y C03 C15 LQQ sing 216 n y C04 C05 LQQ sing 217 n n C04 C06 LQQ sing 218 n y C05 H051 LQQ sing 219 n n C05 H052 LQQ sing 220 n n C05 H053 LQQ sing 221 n n C06 C07 LQQ sing 222 n y C06 C09 LQQ doub 223 n y C07 N01 LQQ doub 224 n y C07 H1 LQQ sing 225 n n N01 C08 LQQ sing 226 n y C08 N02 LQQ doub 227 n y C08 N04 LQQ sing 228 n n N02 C09 LQQ sing 229 n y C09 N03 LQQ sing 230 n y N03 C10 LQQ sing 231 n n N03 C15 LQQ sing 232 n y C10 C11 LQQ sing 233 n n C10 C14 LQQ sing 234 n n C10 H10 LQQ sing 235 n n C11 C12 LQQ sing 236 n n C11 H111 LQQ sing 237 n n C11 H112 LQQ sing 238 n n C12 C13 LQQ sing 239 n n C12 H121 LQQ sing 240 n n C12 H122 LQQ sing 241 n n C13 C14 LQQ sing 242 n n C13 H131 LQQ sing 243 n n C13 H132 LQQ sing 244 n n C14 H141 LQQ sing 245 n n C14 H142 LQQ sing 246 n n C15 O02 LQQ doub 247 n n N04 C16 LQQ sing 248 n n N04 H04 LQQ sing 249 n n C16 N05 LQQ doub 250 n y C16 C20 LQQ sing 251 n y N05 C17 LQQ sing 252 n y C17 C18 LQQ doub 253 n y C17 H17 LQQ sing 254 n n C18 C19 LQQ sing 255 n y C18 N06 LQQ sing 256 n n C19 C20 LQQ doub 257 n y C19 H19 LQQ sing 258 n n C20 H20 LQQ sing 259 n n N06 C21 LQQ sing 260 n n N06 C24 LQQ sing 261 n n C21 C22 LQQ sing 262 n n C21 H211 LQQ sing 263 n n C21 H212 LQQ sing 264 n n C22 N07 LQQ sing 265 n n C22 H221 LQQ sing 266 n n C22 H222 LQQ sing 267 n n N07 C23 LQQ sing 268 n n N07 H07 LQQ sing 269 n n C23 C24 LQQ sing 270 n n C23 H231 LQQ sing 271 n n C23 H232 LQQ sing 272 n n C24 H241 LQQ sing 273 n n C24 H242 LQQ sing 274 n n # _atom_sites.entry_id 2EUF _atom_sites.fract_transf_matrix[1][1] 0.014056 _atom_sites.fract_transf_matrix[1][2] 0.008115 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 255 1 CA CA . D 4 ACT B 1 309 1 ACT ACT . E 5 LQQ B 1 401 1 LQQ LIG . F 6 DMS B 1 402 1 DMS DMS . G 7 HOH B 1 403 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 LQQ . . . E 5 32.409 28.544 60.141 1 54.92 ? O01 LQQ 401 B 1 HETATM 2 C C02 LQQ . . . E 5 33.008 27.519 59.901 1 54.19 ? C02 LQQ 401 B 1 HETATM 3 C C01 LQQ . . . E 5 34.312 27.507 59.162 1 53.64 ? C01 LQQ 401 B 1 HETATM 4 C C03 LQQ . . . E 5 32.415 26.212 60.339 1 54.59 ? C03 LQQ 401 B 1 HETATM 5 C C04 LQQ . . . E 5 32.648 25.69 61.615 1 54.49 ? C04 LQQ 401 B 1 HETATM 6 C C05 LQQ . . . E 5 33.429 26.426 62.669 1 54.39 ? C05 LQQ 401 B 1 HETATM 7 C C06 LQQ . . . E 5 31.929 24.46 62.005 1 54.12 ? C06 LQQ 401 B 1 HETATM 8 C C07 LQQ . . . E 5 32.199 23.783 63.272 1 54.53 ? C07 LQQ 401 B 1 HETATM 9 N N01 LQQ . . . E 5 31.588 22.626 63.542 1 54.32 ? N01 LQQ 401 B 1 HETATM 10 C C08 LQQ . . . E 5 30.872 21.968 62.607 1 54.31 ? C08 LQQ 401 B 1 HETATM 11 N N02 LQQ . . . E 5 30.703 22.501 61.354 1 54.4 ? N02 LQQ 401 B 1 HETATM 12 C C09 LQQ . . . E 5 31.266 23.68 60.967 1 53.97 ? C09 LQQ 401 B 1 HETATM 13 N N03 LQQ . . . E 5 31.07 24.23 59.741 1 54.16 ? N03 LQQ 401 B 1 HETATM 14 C C10 LQQ . . . E 5 30.295 23.475 58.739 1 54.23 ? C10 LQQ 401 B 1 HETATM 15 C C11 LQQ . . . E 5 29.213 24.268 58.015 1 53.82 ? C11 LQQ 401 B 1 HETATM 16 C C12 LQQ . . . E 5 29.287 23.872 56.536 1 54.14 ? C12 LQQ 401 B 1 HETATM 17 C C13 LQQ . . . E 5 30.506 22.955 56.332 1 53.71 ? C13 LQQ 401 B 1 HETATM 18 C C14 LQQ . . . E 5 31.252 22.945 57.665 1 54.06 ? C14 LQQ 401 B 1 HETATM 19 C C15 LQQ . . . E 5 31.663 25.493 59.406 1 54.61 ? C15 LQQ 401 B 1 HETATM 20 O O02 LQQ . . . E 5 31.522 26.001 58.262 1 54.65 ? O02 LQQ 401 B 1 HETATM 21 N N04 LQQ . . . E 5 30.35 20.776 63.017 1 54.06 ? N04 LQQ 401 B 1 HETATM 22 C C16 LQQ . . . E 5 29.666 19.861 62.288 1 52.94 ? C16 LQQ 401 B 1 HETATM 23 N N05 LQQ . . . E 5 29.514 18.617 62.801 1 52.27 ? N05 LQQ 401 B 1 HETATM 24 C C17 LQQ . . . E 5 28.844 17.671 62.133 1 52.51 ? C17 LQQ 401 B 1 HETATM 25 C C18 LQQ . . . E 5 28.28 17.946 60.887 1 52.97 ? C18 LQQ 401 B 1 HETATM 26 C C19 LQQ . . . E 5 28.424 19.22 60.347 1 52.82 ? C19 LQQ 401 B 1 HETATM 27 C C20 LQQ . . . E 5 29.117 20.184 61.052 1 52.57 ? C20 LQQ 401 B 1 HETATM 28 N N06 LQQ . . . E 5 27.571 16.953 60.174 1 53.35 ? N06 LQQ 401 B 1 HETATM 29 C C21 LQQ . . . E 5 28.466 15.8 59.906 1 53.54 ? C21 LQQ 401 B 1 HETATM 30 C C22 LQQ . . . E 5 27.712 14.683 59.189 1 53.12 ? C22 LQQ 401 B 1 HETATM 31 N N07 LQQ . . . E 5 27.044 15.196 58.003 1 53.3 ? N07 LQQ 401 B 1 HETATM 32 C C23 LQQ . . . E 5 26.341 16.476 58.025 1 53.35 ? C23 LQQ 401 B 1 HETATM 33 C C24 LQQ . . . E 5 26.986 17.526 58.933 1 53.02 ? C24 LQQ 401 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #