data_2EUK # _model_server_result.job_id unZ89QaoLWWOZymEzC_brQ _model_server_result.datetime_utc '2024-11-13 06:43:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2euk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2EUK # _exptl.entry_id 2EUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.61 _cell.angle_gamma 90 _cell.entry_id 2EUK _cell.length_a 75.867 _cell.length_b 49.304 _cell.length_c 68.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O1 GAL . A GAL 300 1_555 C C1 SPH . A SPH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 C N2 SPH . A SPH 301 1_555 D C1 NER . A NER 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2EUK _atom_sites.fract_transf_matrix[1][1] 0.01318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00843 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GAL A 1 300 300 GAL GAL . C 3 SPH A 1 301 301 SPH SPH . D 4 NER A 1 302 302 NER NER . E 5 OCT A 1 303 303 OCT OCT . F 6 HOH A 1 304 1 HOH HOH . F 6 HOH A 2 305 2 HOH HOH . F 6 HOH A 3 306 3 HOH HOH . F 6 HOH A 4 307 4 HOH HOH . F 6 HOH A 5 308 5 HOH HOH . F 6 HOH A 6 309 6 HOH HOH . F 6 HOH A 7 310 7 HOH HOH . F 6 HOH A 8 311 8 HOH HOH . F 6 HOH A 9 312 9 HOH HOH . F 6 HOH A 10 313 10 HOH HOH . F 6 HOH A 11 314 11 HOH HOH . F 6 HOH A 12 315 12 HOH HOH . F 6 HOH A 13 316 13 HOH HOH . F 6 HOH A 14 317 14 HOH HOH . F 6 HOH A 15 318 15 HOH HOH . F 6 HOH A 16 319 16 HOH HOH . F 6 HOH A 17 320 17 HOH HOH . F 6 HOH A 18 321 18 HOH HOH . F 6 HOH A 19 322 19 HOH HOH . F 6 HOH A 20 323 20 HOH HOH . F 6 HOH A 21 324 21 HOH HOH . F 6 HOH A 22 325 22 HOH HOH . F 6 HOH A 23 326 23 HOH HOH . F 6 HOH A 24 327 24 HOH HOH . F 6 HOH A 25 328 25 HOH HOH . F 6 HOH A 26 329 26 HOH HOH . F 6 HOH A 27 330 27 HOH HOH . F 6 HOH A 28 331 28 HOH HOH . F 6 HOH A 29 332 29 HOH HOH . F 6 HOH A 30 333 30 HOH HOH . F 6 HOH A 31 334 31 HOH HOH . F 6 HOH A 32 335 32 HOH HOH . F 6 HOH A 33 336 33 HOH HOH . F 6 HOH A 34 337 34 HOH HOH . F 6 HOH A 35 338 35 HOH HOH . F 6 HOH A 36 339 36 HOH HOH . F 6 HOH A 37 340 37 HOH HOH . F 6 HOH A 38 341 38 HOH HOH . F 6 HOH A 39 342 39 HOH HOH . F 6 HOH A 40 343 40 HOH HOH . F 6 HOH A 41 344 41 HOH HOH . F 6 HOH A 42 345 42 HOH HOH . F 6 HOH A 43 346 44 HOH HOH . F 6 HOH A 44 347 45 HOH HOH . F 6 HOH A 45 348 46 HOH HOH . F 6 HOH A 46 349 47 HOH HOH . F 6 HOH A 47 350 48 HOH HOH . F 6 HOH A 48 351 49 HOH HOH . F 6 HOH A 49 352 50 HOH HOH . F 6 HOH A 50 353 51 HOH HOH . F 6 HOH A 51 354 52 HOH HOH . F 6 HOH A 52 355 53 HOH HOH . F 6 HOH A 53 356 54 HOH HOH . F 6 HOH A 54 357 55 HOH HOH . F 6 HOH A 55 358 56 HOH HOH . F 6 HOH A 56 359 57 HOH HOH . F 6 HOH A 57 360 59 HOH HOH . F 6 HOH A 58 361 61 HOH HOH . F 6 HOH A 59 362 62 HOH HOH . F 6 HOH A 60 363 63 HOH HOH . F 6 HOH A 61 364 64 HOH HOH . F 6 HOH A 62 365 65 HOH HOH . F 6 HOH A 63 366 66 HOH HOH . F 6 HOH A 64 367 67 HOH HOH . F 6 HOH A 65 368 68 HOH HOH . F 6 HOH A 66 369 69 HOH HOH . F 6 HOH A 67 370 70 HOH HOH . F 6 HOH A 68 371 72 HOH HOH . F 6 HOH A 69 372 73 HOH HOH . F 6 HOH A 70 373 74 HOH HOH . F 6 HOH A 71 374 76 HOH HOH . F 6 HOH A 72 375 77 HOH HOH . F 6 HOH A 73 376 78 HOH HOH . F 6 HOH A 74 377 79 HOH HOH . F 6 HOH A 75 378 80 HOH HOH . F 6 HOH A 76 379 81 HOH HOH . F 6 HOH A 77 380 82 HOH HOH . F 6 HOH A 78 381 83 HOH HOH . F 6 HOH A 79 382 84 HOH HOH . F 6 HOH A 80 383 85 HOH HOH . F 6 HOH A 81 384 86 HOH HOH . F 6 HOH A 82 385 87 HOH HOH . F 6 HOH A 83 386 88 HOH HOH . F 6 HOH A 84 387 90 HOH HOH . F 6 HOH A 85 388 91 HOH HOH . F 6 HOH A 86 389 92 HOH HOH . F 6 HOH A 87 390 93 HOH HOH . F 6 HOH A 88 391 94 HOH HOH . F 6 HOH A 89 392 96 HOH HOH . F 6 HOH A 90 393 101 HOH HOH . F 6 HOH A 91 394 102 HOH HOH . F 6 HOH A 92 395 103 HOH HOH . F 6 HOH A 93 396 105 HOH HOH . F 6 HOH A 94 397 106 HOH HOH . F 6 HOH A 95 398 107 HOH HOH . F 6 HOH A 96 399 108 HOH HOH . F 6 HOH A 97 400 109 HOH HOH . F 6 HOH A 98 401 110 HOH HOH . F 6 HOH A 99 402 111 HOH HOH . F 6 HOH A 100 403 112 HOH HOH . F 6 HOH A 101 404 113 HOH HOH . F 6 HOH A 102 405 116 HOH HOH . F 6 HOH A 103 406 118 HOH HOH . F 6 HOH A 104 407 122 HOH HOH . F 6 HOH A 105 408 124 HOH HOH . F 6 HOH A 106 409 125 HOH HOH . F 6 HOH A 107 410 129 HOH HOH . F 6 HOH A 108 411 131 HOH HOH . F 6 HOH A 109 412 132 HOH HOH . F 6 HOH A 110 413 133 HOH HOH . F 6 HOH A 111 414 134 HOH HOH . F 6 HOH A 112 415 136 HOH HOH . F 6 HOH A 113 416 137 HOH HOH . F 6 HOH A 114 417 138 HOH HOH . F 6 HOH A 115 418 140 HOH HOH . F 6 HOH A 116 419 144 HOH HOH . F 6 HOH A 117 420 148 HOH HOH . F 6 HOH A 118 421 149 HOH HOH . F 6 HOH A 119 422 150 HOH HOH . F 6 HOH A 120 423 151 HOH HOH . F 6 HOH A 121 424 152 HOH HOH . F 6 HOH A 122 425 153 HOH HOH . F 6 HOH A 123 426 154 HOH HOH . F 6 HOH A 124 427 155 HOH HOH . F 6 HOH A 125 428 157 HOH HOH . F 6 HOH A 126 429 159 HOH HOH . F 6 HOH A 127 430 160 HOH HOH . F 6 HOH A 128 431 166 HOH HOH . F 6 HOH A 129 432 167 HOH HOH . F 6 HOH A 130 433 168 HOH HOH . F 6 HOH A 131 434 169 HOH HOH . F 6 HOH A 132 435 170 HOH HOH . F 6 HOH A 133 436 172 HOH HOH . F 6 HOH A 134 437 173 HOH HOH . F 6 HOH A 135 438 174 HOH HOH . F 6 HOH A 136 439 175 HOH HOH . F 6 HOH A 137 440 176 HOH HOH . F 6 HOH A 138 441 177 HOH HOH . F 6 HOH A 139 442 178 HOH HOH . F 6 HOH A 140 443 180 HOH HOH . F 6 HOH A 141 444 181 HOH HOH . F 6 HOH A 142 445 182 HOH HOH . F 6 HOH A 143 446 183 HOH HOH . F 6 HOH A 144 447 200 HOH HOH . F 6 HOH A 145 448 201 HOH HOH . F 6 HOH A 146 449 202 HOH HOH . F 6 HOH A 147 450 203 HOH HOH . F 6 HOH A 148 451 204 HOH HOH . F 6 HOH A 149 452 205 HOH HOH . F 6 HOH A 150 453 206 HOH HOH . F 6 HOH A 151 454 207 HOH HOH . F 6 HOH A 152 455 208 HOH HOH . F 6 HOH A 153 456 210 HOH HOH . F 6 HOH A 154 457 211 HOH HOH . F 6 HOH A 155 458 212 HOH HOH . F 6 HOH A 156 459 213 HOH HOH . F 6 HOH A 157 460 214 HOH HOH . F 6 HOH A 158 461 215 HOH HOH . F 6 HOH A 159 462 216 HOH HOH . F 6 HOH A 160 463 217 HOH HOH . F 6 HOH A 161 464 218 HOH HOH . F 6 HOH A 162 465 219 HOH HOH . F 6 HOH A 163 466 220 HOH HOH . F 6 HOH A 164 467 221 HOH HOH . F 6 HOH A 165 468 222 HOH HOH . F 6 HOH A 166 469 223 HOH HOH . F 6 HOH A 167 470 224 HOH HOH . F 6 HOH A 168 471 225 HOH HOH . F 6 HOH A 169 472 226 HOH HOH . F 6 HOH A 170 473 227 HOH HOH . F 6 HOH A 171 474 228 HOH HOH . F 6 HOH A 172 475 229 HOH HOH . F 6 HOH A 173 476 230 HOH HOH . F 6 HOH A 174 477 231 HOH HOH . F 6 HOH A 175 478 232 HOH HOH . F 6 HOH A 176 479 233 HOH HOH . F 6 HOH A 177 480 234 HOH HOH . F 6 HOH A 178 481 235 HOH HOH . F 6 HOH A 179 482 236 HOH HOH . F 6 HOH A 180 483 237 HOH HOH . F 6 HOH A 181 484 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . B 2 22.944 0.382 18.407 1 24.7 ? C1 GAL 300 A 1 HETATM 2 C C2 GAL . . . B 2 22.362 1.75 18.772 1 24.49 ? C2 GAL 300 A 1 HETATM 3 C C3 GAL . . . B 2 22.967 2.84 17.878 1 24.72 ? C3 GAL 300 A 1 HETATM 4 C C4 GAL . . . B 2 24.495 2.771 17.901 1 29.18 ? C4 GAL 300 A 1 HETATM 5 C C5 GAL . . . B 2 24.929 1.339 17.585 1 26.79 ? C5 GAL 300 A 1 HETATM 6 C C6 GAL . . . B 2 26.46 1.189 17.577 1 28.27 ? C6 GAL 300 A 1 HETATM 7 O O1 GAL . . . B 2 22.433 -0.614 19.239 1 25 ? O1 GAL 300 A 1 HETATM 8 O O2 GAL . . . B 2 20.969 1.633 18.589 1 22.4 ? O2 GAL 300 A 1 HETATM 9 O O3 GAL . . . B 2 22.58 4.115 18.326 1 23.88 ? O3 GAL 300 A 1 HETATM 10 O O4 GAL . . . B 2 24.929 3.209 19.182 1 27.42 ? O4 GAL 300 A 1 HETATM 11 O O5 GAL . . . B 2 24.361 0.376 18.45 1 25.55 ? O5 GAL 300 A 1 HETATM 12 O O6 GAL . . . B 2 26.798 -0.057 17.008 1 27.17 ? O6 GAL 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 12 #