data_2EVA # _model_server_result.job_id 2ooX27737F_5h7ervNDu1g _model_server_result.datetime_utc '2025-02-18 02:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2eva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":498}' # _entry.id 2EVA # _exptl.entry_id 2EVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EVA _cell.length_a 58.4 _cell.length_b 144.3 _cell.length_c 134.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 2EVA _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 498 1 ADN ADN . C 3 HOH A 1 499 1 HOH HOH . C 3 HOH A 2 500 2 HOH HOH . C 3 HOH A 3 501 3 HOH HOH . C 3 HOH A 4 502 4 HOH HOH . C 3 HOH A 5 503 5 HOH HOH . C 3 HOH A 6 504 6 HOH HOH . C 3 HOH A 7 505 7 HOH HOH . C 3 HOH A 8 506 8 HOH HOH . C 3 HOH A 9 507 9 HOH HOH . C 3 HOH A 10 508 10 HOH HOH . C 3 HOH A 11 509 11 HOH HOH . C 3 HOH A 12 510 12 HOH HOH . C 3 HOH A 13 511 13 HOH HOH . C 3 HOH A 14 512 14 HOH HOH . C 3 HOH A 15 513 15 HOH HOH . C 3 HOH A 16 514 16 HOH HOH . C 3 HOH A 17 515 17 HOH HOH . C 3 HOH A 18 516 18 HOH HOH . C 3 HOH A 19 517 19 HOH HOH . C 3 HOH A 20 518 20 HOH HOH . C 3 HOH A 21 519 21 HOH HOH . C 3 HOH A 22 520 22 HOH HOH . C 3 HOH A 23 521 23 HOH HOH . C 3 HOH A 24 522 24 HOH HOH . C 3 HOH A 25 523 25 HOH HOH . C 3 HOH A 26 524 26 HOH HOH . C 3 HOH A 27 525 27 HOH HOH . C 3 HOH A 28 526 28 HOH HOH . C 3 HOH A 29 527 29 HOH HOH . C 3 HOH A 30 528 30 HOH HOH . C 3 HOH A 31 529 31 HOH HOH . C 3 HOH A 32 530 32 HOH HOH . C 3 HOH A 33 531 33 HOH HOH . C 3 HOH A 34 532 34 HOH HOH . C 3 HOH A 35 533 35 HOH HOH . C 3 HOH A 36 534 36 HOH HOH . C 3 HOH A 37 535 37 HOH HOH . C 3 HOH A 38 536 38 HOH HOH . C 3 HOH A 39 537 39 HOH HOH . C 3 HOH A 40 538 40 HOH HOH . C 3 HOH A 41 539 41 HOH HOH . C 3 HOH A 42 540 42 HOH HOH . C 3 HOH A 43 541 43 HOH HOH . C 3 HOH A 44 542 44 HOH HOH . C 3 HOH A 45 543 45 HOH HOH . C 3 HOH A 46 544 46 HOH HOH . C 3 HOH A 47 545 47 HOH HOH . C 3 HOH A 48 546 48 HOH HOH . C 3 HOH A 49 547 49 HOH HOH . C 3 HOH A 50 548 50 HOH HOH . C 3 HOH A 51 549 51 HOH HOH . C 3 HOH A 52 550 52 HOH HOH . C 3 HOH A 53 551 53 HOH HOH . C 3 HOH A 54 552 54 HOH HOH . C 3 HOH A 55 553 55 HOH HOH . C 3 HOH A 56 554 56 HOH HOH . C 3 HOH A 57 555 57 HOH HOH . C 3 HOH A 58 556 58 HOH HOH . C 3 HOH A 59 557 59 HOH HOH . C 3 HOH A 60 558 60 HOH HOH . C 3 HOH A 61 559 61 HOH HOH . C 3 HOH A 62 560 62 HOH HOH . C 3 HOH A 63 561 63 HOH HOH . C 3 HOH A 64 562 64 HOH HOH . C 3 HOH A 65 563 65 HOH HOH . C 3 HOH A 66 564 66 HOH HOH . C 3 HOH A 67 565 67 HOH HOH . C 3 HOH A 68 566 68 HOH HOH . C 3 HOH A 69 567 69 HOH HOH . C 3 HOH A 70 568 70 HOH HOH . C 3 HOH A 71 569 71 HOH HOH . C 3 HOH A 72 570 72 HOH HOH . C 3 HOH A 73 571 73 HOH HOH . C 3 HOH A 74 572 74 HOH HOH . C 3 HOH A 75 573 75 HOH HOH . C 3 HOH A 76 574 76 HOH HOH . C 3 HOH A 77 575 77 HOH HOH . C 3 HOH A 78 576 78 HOH HOH . C 3 HOH A 79 577 79 HOH HOH . C 3 HOH A 80 578 80 HOH HOH . C 3 HOH A 81 579 81 HOH HOH . C 3 HOH A 82 580 82 HOH HOH . C 3 HOH A 83 581 83 HOH HOH . C 3 HOH A 84 582 84 HOH HOH . C 3 HOH A 85 583 85 HOH HOH . C 3 HOH A 86 584 86 HOH HOH . C 3 HOH A 87 585 87 HOH HOH . C 3 HOH A 88 586 88 HOH HOH . C 3 HOH A 89 587 89 HOH HOH . C 3 HOH A 90 588 90 HOH HOH . C 3 HOH A 91 589 91 HOH HOH . C 3 HOH A 92 590 92 HOH HOH . C 3 HOH A 93 591 93 HOH HOH . C 3 HOH A 94 592 94 HOH HOH . C 3 HOH A 95 593 95 HOH HOH . C 3 HOH A 96 594 96 HOH HOH . C 3 HOH A 97 595 97 HOH HOH . C 3 HOH A 98 596 98 HOH HOH . C 3 HOH A 99 597 99 HOH HOH . C 3 HOH A 100 598 100 HOH HOH . C 3 HOH A 101 599 101 HOH HOH . C 3 HOH A 102 600 102 HOH HOH . C 3 HOH A 103 601 103 HOH HOH . C 3 HOH A 104 602 104 HOH HOH . C 3 HOH A 105 603 105 HOH HOH . C 3 HOH A 106 604 106 HOH HOH . C 3 HOH A 107 605 107 HOH HOH . C 3 HOH A 108 606 108 HOH HOH . C 3 HOH A 109 607 109 HOH HOH . C 3 HOH A 110 608 110 HOH HOH . C 3 HOH A 111 609 111 HOH HOH . C 3 HOH A 112 610 112 HOH HOH . C 3 HOH A 113 611 113 HOH HOH . C 3 HOH A 114 612 114 HOH HOH . C 3 HOH A 115 613 115 HOH HOH . C 3 HOH A 116 614 116 HOH HOH . C 3 HOH A 117 615 117 HOH HOH . C 3 HOH A 118 616 118 HOH HOH . C 3 HOH A 119 617 119 HOH HOH . C 3 HOH A 120 618 120 HOH HOH . C 3 HOH A 121 619 121 HOH HOH . C 3 HOH A 122 620 122 HOH HOH . C 3 HOH A 123 621 123 HOH HOH . C 3 HOH A 124 622 124 HOH HOH . C 3 HOH A 125 623 125 HOH HOH . C 3 HOH A 126 624 126 HOH HOH . C 3 HOH A 127 625 127 HOH HOH . C 3 HOH A 128 626 128 HOH HOH . C 3 HOH A 129 627 129 HOH HOH . C 3 HOH A 130 628 130 HOH HOH . C 3 HOH A 131 629 131 HOH HOH . C 3 HOH A 132 630 132 HOH HOH . C 3 HOH A 133 631 133 HOH HOH . C 3 HOH A 134 632 134 HOH HOH . C 3 HOH A 135 633 135 HOH HOH . C 3 HOH A 136 634 136 HOH HOH . C 3 HOH A 137 635 137 HOH HOH . C 3 HOH A 138 636 138 HOH HOH . C 3 HOH A 139 637 139 HOH HOH . C 3 HOH A 140 638 140 HOH HOH . C 3 HOH A 141 639 141 HOH HOH . C 3 HOH A 142 640 142 HOH HOH . C 3 HOH A 143 641 143 HOH HOH . C 3 HOH A 144 642 144 HOH HOH . C 3 HOH A 145 643 145 HOH HOH . C 3 HOH A 146 644 146 HOH HOH . C 3 HOH A 147 645 147 HOH HOH . C 3 HOH A 148 646 148 HOH HOH . C 3 HOH A 149 647 149 HOH HOH . C 3 HOH A 150 648 150 HOH HOH . C 3 HOH A 151 649 151 HOH HOH . C 3 HOH A 152 650 152 HOH HOH . C 3 HOH A 153 651 153 HOH HOH . C 3 HOH A 154 652 154 HOH HOH . C 3 HOH A 155 653 155 HOH HOH . C 3 HOH A 156 654 156 HOH HOH . C 3 HOH A 157 655 157 HOH HOH . C 3 HOH A 158 656 158 HOH HOH . C 3 HOH A 159 657 159 HOH HOH . C 3 HOH A 160 658 160 HOH HOH . C 3 HOH A 161 659 161 HOH HOH . C 3 HOH A 162 660 162 HOH HOH . C 3 HOH A 163 661 163 HOH HOH . C 3 HOH A 164 662 164 HOH HOH . C 3 HOH A 165 663 165 HOH HOH . C 3 HOH A 166 664 166 HOH HOH . C 3 HOH A 167 665 167 HOH HOH . C 3 HOH A 168 666 168 HOH HOH . C 3 HOH A 169 667 169 HOH HOH . C 3 HOH A 170 668 170 HOH HOH . C 3 HOH A 171 669 171 HOH HOH . C 3 HOH A 172 670 172 HOH HOH . C 3 HOH A 173 671 173 HOH HOH . C 3 HOH A 174 672 174 HOH HOH . C 3 HOH A 175 673 175 HOH HOH . C 3 HOH A 176 674 176 HOH HOH . C 3 HOH A 177 675 177 HOH HOH . C 3 HOH A 178 676 178 HOH HOH . C 3 HOH A 179 677 179 HOH HOH . C 3 HOH A 180 678 180 HOH HOH . C 3 HOH A 181 679 181 HOH HOH . C 3 HOH A 182 680 182 HOH HOH . C 3 HOH A 183 681 183 HOH HOH . C 3 HOH A 184 682 184 HOH HOH . C 3 HOH A 185 683 185 HOH HOH . C 3 HOH A 186 684 186 HOH HOH . C 3 HOH A 187 685 187 HOH HOH . C 3 HOH A 188 686 188 HOH HOH . C 3 HOH A 189 687 189 HOH HOH . C 3 HOH A 190 688 190 HOH HOH . C 3 HOH A 191 689 191 HOH HOH . C 3 HOH A 192 690 192 HOH HOH . C 3 HOH A 193 691 193 HOH HOH . C 3 HOH A 194 692 194 HOH HOH . C 3 HOH A 195 693 195 HOH HOH . C 3 HOH A 196 694 196 HOH HOH . C 3 HOH A 197 695 197 HOH HOH . C 3 HOH A 198 696 198 HOH HOH . C 3 HOH A 199 697 199 HOH HOH . C 3 HOH A 200 698 200 HOH HOH . C 3 HOH A 201 699 201 HOH HOH . C 3 HOH A 202 700 202 HOH HOH . C 3 HOH A 203 701 203 HOH HOH . C 3 HOH A 204 702 204 HOH HOH . C 3 HOH A 205 703 205 HOH HOH . C 3 HOH A 206 704 206 HOH HOH . C 3 HOH A 207 705 207 HOH HOH . C 3 HOH A 208 706 208 HOH HOH . C 3 HOH A 209 707 209 HOH HOH . C 3 HOH A 210 708 210 HOH HOH . C 3 HOH A 211 709 211 HOH HOH . C 3 HOH A 212 710 212 HOH HOH . C 3 HOH A 213 711 213 HOH HOH . C 3 HOH A 214 712 214 HOH HOH . C 3 HOH A 215 713 215 HOH HOH . C 3 HOH A 216 714 216 HOH HOH . C 3 HOH A 217 715 217 HOH HOH . C 3 HOH A 218 716 218 HOH HOH . C 3 HOH A 219 717 219 HOH HOH . C 3 HOH A 220 718 220 HOH HOH . C 3 HOH A 221 719 221 HOH HOH . C 3 HOH A 222 720 222 HOH HOH . C 3 HOH A 223 721 223 HOH HOH . C 3 HOH A 224 722 224 HOH HOH . C 3 HOH A 225 723 225 HOH HOH . C 3 HOH A 226 724 226 HOH HOH . C 3 HOH A 227 725 227 HOH HOH . C 3 HOH A 228 726 228 HOH HOH . C 3 HOH A 229 727 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 11.263 53.936 14.307 1 57.85 ? O5' ADN 498 A 1 HETATM 2 C C5' ADN . . . B 2 12.498 53.959 13.564 1 50.15 ? C5' ADN 498 A 1 HETATM 3 C C4' ADN . . . B 2 13.696 53.837 14.578 1 48.75 ? C4' ADN 498 A 1 HETATM 4 O O4' ADN . . . B 2 13.237 54.849 15.5 1 43.84 ? O4' ADN 498 A 1 HETATM 5 C C3' ADN . . . B 2 13.537 52.62 15.496 1 49.12 ? C3' ADN 498 A 1 HETATM 6 O O3' ADN . . . B 2 14.353 51.562 14.947 1 48.03 ? O3' ADN 498 A 1 HETATM 7 C C2' ADN . . . B 2 14.017 53.09 16.881 1 49.28 ? C2' ADN 498 A 1 HETATM 8 O O2' ADN . . . B 2 15.227 52.489 17.352 1 53.69 ? O2' ADN 498 A 1 HETATM 9 C C1' ADN . . . B 2 14.031 54.618 16.644 1 45.46 ? C1' ADN 498 A 1 HETATM 10 N N9 ADN . . . B 2 13.52 55.504 17.715 1 42.85 ? N9 ADN 498 A 1 HETATM 11 C C8 ADN . . . B 2 12.192 56.028 17.777 1 42.41 ? C8 ADN 498 A 1 HETATM 12 N N7 ADN . . . B 2 11.935 56.777 18.803 1 41.48 ? N7 ADN 498 A 1 HETATM 13 C C5 ADN . . . B 2 13.134 56.787 19.501 1 42.09 ? C5 ADN 498 A 1 HETATM 14 C C6 ADN . . . B 2 13.551 57.421 20.749 1 40.16 ? C6 ADN 498 A 1 HETATM 15 N N6 ADN . . . B 2 12.716 58.179 21.464 1 40.62 ? N6 ADN 498 A 1 HETATM 16 N N1 ADN . . . B 2 14.881 57.219 21.197 1 40.98 ? N1 ADN 498 A 1 HETATM 17 C C2 ADN . . . B 2 15.771 56.429 20.469 1 40.21 ? C2 ADN 498 A 1 HETATM 18 N N3 ADN . . . B 2 15.472 55.782 19.274 1 41.46 ? N3 ADN 498 A 1 HETATM 19 C C4 ADN . . . B 2 14.143 55.999 18.85 1 41.81 ? C4 ADN 498 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #