data_2EWM # _model_server_result.job_id rBJQdY7mymsL-BFSccSjZQ _model_server_result.datetime_utc '2024-10-17 06:30:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ewm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":256}' # _entry.id 2EWM # _exptl.entry_id 2EWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EWM _cell.length_a 58.4 _cell.length_b 58.4 _cell.length_c 236.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_734 y+2,x-2,-z-1 0 1 0 1 0 0 0 0 -1 116.8 -116.8 -236.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 2EWM _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 702 702 SO4 SO4 . D 3 NAD A 1 257 257 NAD NAD . E 2 SO4 B 1 701 701 SO4 SO4 . F 3 NAD B 1 256 256 NAD NAD . G 4 HOH A 1 703 1 HOH HOH . G 4 HOH A 2 704 2 HOH HOH . G 4 HOH A 3 705 3 HOH HOH . G 4 HOH A 4 706 4 HOH HOH . G 4 HOH A 5 707 5 HOH HOH . G 4 HOH A 6 708 6 HOH HOH . G 4 HOH A 7 709 7 HOH HOH . G 4 HOH A 8 710 8 HOH HOH . G 4 HOH A 9 711 9 HOH HOH . G 4 HOH A 10 712 10 HOH HOH . G 4 HOH A 11 713 11 HOH HOH . G 4 HOH A 12 714 12 HOH HOH . G 4 HOH A 13 715 13 HOH HOH . G 4 HOH A 14 716 14 HOH HOH . G 4 HOH A 15 717 15 HOH HOH . G 4 HOH A 16 718 16 HOH HOH . G 4 HOH A 17 719 17 HOH HOH . G 4 HOH A 18 720 18 HOH HOH . G 4 HOH A 19 721 19 HOH HOH . G 4 HOH A 20 722 20 HOH HOH . G 4 HOH A 21 723 21 HOH HOH . G 4 HOH A 22 724 22 HOH HOH . G 4 HOH A 23 725 23 HOH HOH . G 4 HOH A 24 726 24 HOH HOH . G 4 HOH A 25 727 56 HOH HOH . G 4 HOH A 26 728 59 HOH HOH . G 4 HOH A 27 729 61 HOH HOH . G 4 HOH A 28 730 62 HOH HOH . G 4 HOH A 29 731 63 HOH HOH . G 4 HOH A 30 732 66 HOH HOH . G 4 HOH A 31 733 68 HOH HOH . G 4 HOH A 32 734 69 HOH HOH . G 4 HOH A 33 735 70 HOH HOH . G 4 HOH A 34 736 71 HOH HOH . G 4 HOH A 35 737 72 HOH HOH . G 4 HOH A 36 738 73 HOH HOH . G 4 HOH A 37 739 74 HOH HOH . G 4 HOH A 38 740 75 HOH HOH . G 4 HOH A 39 741 76 HOH HOH . G 4 HOH A 40 742 77 HOH HOH . G 4 HOH A 41 743 78 HOH HOH . G 4 HOH A 42 744 79 HOH HOH . G 4 HOH A 43 745 80 HOH HOH . G 4 HOH A 44 746 81 HOH HOH . G 4 HOH A 45 747 82 HOH HOH . G 4 HOH A 46 748 83 HOH HOH . G 4 HOH A 47 749 84 HOH HOH . G 4 HOH A 48 750 86 HOH HOH . G 4 HOH A 49 751 87 HOH HOH . G 4 HOH A 50 752 88 HOH HOH . G 4 HOH A 51 753 89 HOH HOH . G 4 HOH A 52 754 90 HOH HOH . G 4 HOH A 53 755 91 HOH HOH . G 4 HOH A 54 756 92 HOH HOH . G 4 HOH A 55 757 93 HOH HOH . G 4 HOH A 56 758 94 HOH HOH . G 4 HOH A 57 759 96 HOH HOH . G 4 HOH A 58 760 120 HOH HOH . G 4 HOH A 59 761 121 HOH HOH . G 4 HOH A 60 762 122 HOH HOH . G 4 HOH A 61 763 125 HOH HOH . G 4 HOH A 62 764 127 HOH HOH . G 4 HOH A 63 765 128 HOH HOH . G 4 HOH A 64 766 129 HOH HOH . G 4 HOH A 65 767 130 HOH HOH . G 4 HOH A 66 768 131 HOH HOH . G 4 HOH A 67 769 132 HOH HOH . G 4 HOH A 68 770 133 HOH HOH . G 4 HOH A 69 771 134 HOH HOH . G 4 HOH A 70 772 135 HOH HOH . G 4 HOH A 71 773 136 HOH HOH . G 4 HOH A 72 774 153 HOH HOH . G 4 HOH A 73 775 154 HOH HOH . G 4 HOH A 74 776 155 HOH HOH . G 4 HOH A 75 777 156 HOH HOH . G 4 HOH A 76 778 157 HOH HOH . G 4 HOH A 77 779 158 HOH HOH . G 4 HOH A 78 780 160 HOH HOH . G 4 HOH A 79 781 167 HOH HOH . G 4 HOH A 80 782 169 HOH HOH . G 4 HOH A 81 783 170 HOH HOH . G 4 HOH A 82 784 171 HOH HOH . H 4 HOH B 1 702 25 HOH HOH . H 4 HOH B 2 703 26 HOH HOH . H 4 HOH B 3 704 27 HOH HOH . H 4 HOH B 4 705 28 HOH HOH . H 4 HOH B 5 706 29 HOH HOH . H 4 HOH B 6 707 30 HOH HOH . H 4 HOH B 7 708 31 HOH HOH . H 4 HOH B 8 709 32 HOH HOH . H 4 HOH B 9 710 33 HOH HOH . H 4 HOH B 10 711 34 HOH HOH . H 4 HOH B 11 712 35 HOH HOH . H 4 HOH B 12 713 36 HOH HOH . H 4 HOH B 13 714 37 HOH HOH . H 4 HOH B 14 715 38 HOH HOH . H 4 HOH B 15 716 39 HOH HOH . H 4 HOH B 16 717 40 HOH HOH . H 4 HOH B 17 718 41 HOH HOH . H 4 HOH B 18 719 42 HOH HOH . H 4 HOH B 19 720 43 HOH HOH . H 4 HOH B 20 721 44 HOH HOH . H 4 HOH B 21 722 45 HOH HOH . H 4 HOH B 22 723 46 HOH HOH . H 4 HOH B 23 724 47 HOH HOH . H 4 HOH B 24 725 48 HOH HOH . H 4 HOH B 25 726 49 HOH HOH . H 4 HOH B 26 727 50 HOH HOH . H 4 HOH B 27 728 51 HOH HOH . H 4 HOH B 28 729 52 HOH HOH . H 4 HOH B 29 730 53 HOH HOH . H 4 HOH B 30 731 54 HOH HOH . H 4 HOH B 31 732 55 HOH HOH . H 4 HOH B 32 733 57 HOH HOH . H 4 HOH B 33 734 58 HOH HOH . H 4 HOH B 34 735 60 HOH HOH . H 4 HOH B 35 736 64 HOH HOH . H 4 HOH B 36 737 65 HOH HOH . H 4 HOH B 37 738 67 HOH HOH . H 4 HOH B 38 739 85 HOH HOH . H 4 HOH B 39 740 95 HOH HOH . H 4 HOH B 40 741 97 HOH HOH . H 4 HOH B 41 742 98 HOH HOH . H 4 HOH B 42 743 99 HOH HOH . H 4 HOH B 43 744 100 HOH HOH . H 4 HOH B 44 745 101 HOH HOH . H 4 HOH B 45 746 102 HOH HOH . H 4 HOH B 46 747 103 HOH HOH . H 4 HOH B 47 748 104 HOH HOH . H 4 HOH B 48 749 105 HOH HOH . H 4 HOH B 49 750 106 HOH HOH . H 4 HOH B 50 751 107 HOH HOH . H 4 HOH B 51 752 108 HOH HOH . H 4 HOH B 52 753 109 HOH HOH . H 4 HOH B 53 754 110 HOH HOH . H 4 HOH B 54 755 111 HOH HOH . H 4 HOH B 55 756 112 HOH HOH . H 4 HOH B 56 757 113 HOH HOH . H 4 HOH B 57 758 114 HOH HOH . H 4 HOH B 58 759 115 HOH HOH . H 4 HOH B 59 760 116 HOH HOH . H 4 HOH B 60 761 117 HOH HOH . H 4 HOH B 61 762 118 HOH HOH . H 4 HOH B 62 763 119 HOH HOH . H 4 HOH B 63 764 124 HOH HOH . H 4 HOH B 64 765 137 HOH HOH . H 4 HOH B 65 766 138 HOH HOH . H 4 HOH B 66 767 139 HOH HOH . H 4 HOH B 67 768 140 HOH HOH . H 4 HOH B 68 769 141 HOH HOH . H 4 HOH B 69 770 142 HOH HOH . H 4 HOH B 70 771 144 HOH HOH . H 4 HOH B 71 772 145 HOH HOH . H 4 HOH B 72 773 146 HOH HOH . H 4 HOH B 73 774 147 HOH HOH . H 4 HOH B 74 775 148 HOH HOH . H 4 HOH B 75 776 149 HOH HOH . H 4 HOH B 76 777 151 HOH HOH . H 4 HOH B 77 778 152 HOH HOH . H 4 HOH B 78 779 159 HOH HOH . H 4 HOH B 79 780 161 HOH HOH . H 4 HOH B 80 781 162 HOH HOH . H 4 HOH B 81 782 163 HOH HOH . H 4 HOH B 82 783 164 HOH HOH . H 4 HOH B 83 784 165 HOH HOH . H 4 HOH B 84 785 166 HOH HOH . H 4 HOH B 85 786 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 81.273 -56.264 -132.894 0.66 61.41 ? PA NAD 256 B 1 HETATM 2 O O1A NAD . . . F 3 81.762 -57.587 -132.479 0.66 60.94 ? O1A NAD 256 B 1 HETATM 3 O O2A NAD . . . F 3 81.511 -55.816 -134.332 0.66 62.19 ? O2A NAD 256 B 1 HETATM 4 O O5B NAD . . . F 3 81.862 -55.156 -131.901 0.66 59.02 ? O5B NAD 256 B 1 HETATM 5 C C5B NAD . . . F 3 81.204 -53.926 -131.607 0.66 56.97 ? C5B NAD 256 B 1 HETATM 6 C C4B NAD . . . F 3 81.391 -52.903 -132.737 0.66 54.11 ? C4B NAD 256 B 1 HETATM 7 O O4B NAD . . . F 3 81.1 -51.642 -132.142 0.66 53.31 ? O4B NAD 256 B 1 HETATM 8 C C3B NAD . . . F 3 82.79 -52.804 -133.356 0.66 53.29 ? C3B NAD 256 B 1 HETATM 9 O O3B NAD . . . F 3 82.719 -52.698 -134.777 0.66 52.67 ? O3B NAD 256 B 1 HETATM 10 C C2B NAD . . . F 3 83.381 -51.572 -132.684 0.66 51.79 ? C2B NAD 256 B 1 HETATM 11 O O2B NAD . . . F 3 84.396 -50.901 -133.4 0.66 50.28 ? O2B NAD 256 B 1 HETATM 12 C C1B NAD . . . F 3 82.13 -50.723 -132.491 0.66 50.48 ? C1B NAD 256 B 1 HETATM 13 N N9A NAD . . . F 3 82.206 -49.648 -131.481 0.66 48.34 ? N9A NAD 256 B 1 HETATM 14 C C8A NAD . . . F 3 82.447 -49.717 -130.13 0.66 48.02 ? C8A NAD 256 B 1 HETATM 15 N N7A NAD . . . F 3 82.527 -48.457 -129.639 0.66 47.8 ? N7A NAD 256 B 1 HETATM 16 C C5A NAD . . . F 3 82.318 -47.581 -130.645 0.66 46.15 ? C5A NAD 256 B 1 HETATM 17 C C6A NAD . . . F 3 82.288 -46.173 -130.745 0.66 45.55 ? C6A NAD 256 B 1 HETATM 18 N N6A NAD . . . F 3 82.509 -45.402 -129.691 0.66 44.87 ? N6A NAD 256 B 1 HETATM 19 N N1A NAD . . . F 3 82.029 -45.574 -131.979 0.66 44.68 ? N1A NAD 256 B 1 HETATM 20 C C2A NAD . . . F 3 81.789 -46.359 -133.104 0.66 45.06 ? C2A NAD 256 B 1 HETATM 21 N N3A NAD . . . F 3 81.837 -47.744 -133.023 0.66 45.9 ? N3A NAD 256 B 1 HETATM 22 C C4A NAD . . . F 3 82.094 -48.331 -131.811 0.66 46.88 ? C4A NAD 256 B 1 HETATM 23 O O3 NAD . . . F 3 79.692 -56.187 -132.598 0.66 61.89 ? O3 NAD 256 B 1 HETATM 24 P PN NAD . . . F 3 78.688 -57.266 -131.944 0.66 61.11 ? PN NAD 256 B 1 HETATM 25 O O1N NAD . . . F 3 79.373 -57.963 -130.828 0.66 61.88 ? O1N NAD 256 B 1 HETATM 26 O O2N NAD . . . F 3 78.274 -58.244 -132.962 0.66 61.49 ? O2N NAD 256 B 1 HETATM 27 O O5D NAD . . . F 3 77.392 -56.507 -131.381 0.66 61.15 ? O5D NAD 256 B 1 HETATM 28 C C5D NAD . . . F 3 77.585 -55.377 -130.558 0.66 61.79 ? C5D NAD 256 B 1 HETATM 29 C C4D NAD . . . F 3 76.275 -54.833 -129.985 0.66 61.11 ? C4D NAD 256 B 1 HETATM 30 O O4D NAD . . . F 3 75.397 -55.887 -129.631 0.66 62.06 ? O4D NAD 256 B 1 HETATM 31 C C3D NAD . . . F 3 76.474 -54.003 -128.726 0.66 60.88 ? C3D NAD 256 B 1 HETATM 32 O O3D NAD . . . F 3 75.515 -52.959 -128.693 0.66 59.86 ? O3D NAD 256 B 1 HETATM 33 C C2D NAD . . . F 3 76.269 -55.004 -127.608 0.66 60.64 ? C2D NAD 256 B 1 HETATM 34 O O2D NAD . . . F 3 75.904 -54.399 -126.392 0.66 58.38 ? O2D NAD 256 B 1 HETATM 35 C C1D NAD . . . F 3 75.191 -55.914 -128.223 0.66 62 ? C1D NAD 256 B 1 HETATM 36 N N1N NAD . . . F 3 75.128 -57.328 -127.754 0.66 63.85 ? N1N NAD 256 B 1 HETATM 37 C C2N NAD . . . F 3 76.057 -58.23 -128.274 0.66 64.33 ? C2N NAD 256 B 1 HETATM 38 C C3N NAD . . . F 3 76.013 -59.577 -127.892 0.66 65.08 ? C3N NAD 256 B 1 HETATM 39 C C7N NAD . . . F 3 76.992 -60.545 -128.494 0.66 65.76 ? C7N NAD 256 B 1 HETATM 40 O O7N NAD . . . F 3 76.913 -61.857 -128.104 0.66 65 ? O7N NAD 256 B 1 HETATM 41 N N7N NAD . . . F 3 77.917 -60.2 -129.374 0.66 66.16 ? N7N NAD 256 B 1 HETATM 42 C C4N NAD . . . F 3 75.033 -59.991 -126.952 0.66 65.54 ? C4N NAD 256 B 1 HETATM 43 C C5N NAD . . . F 3 74.101 -59.066 -126.429 0.66 65.29 ? C5N NAD 256 B 1 HETATM 44 C C6N NAD . . . F 3 74.156 -57.728 -126.85 0.66 64.58 ? C6N NAD 256 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #