data_2EWN # _model_server_result.job_id oTYMzMpn-Ql_nZZm0fFPug _model_server_result.datetime_utc '2024-11-05 00:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ewn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2EWN # _exptl.entry_id 2EWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.533 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EWN _cell.length_a 152.188 _cell.length_b 152.188 _cell.length_c 93.189 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H30 N7 O8 P S' _chem_comp.formula_weight 559.533 _chem_comp.id BTX _chem_comp.mon_nstd_flag . _chem_comp.name '((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIOTINOL-5-AMP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P BTX doub 70 n n P O2P BTX sing 71 n n P O5' BTX sing 72 n n P OBB BTX sing 73 n n O2P H2P BTX sing 74 n n O5' C5' BTX sing 75 n n C5' C4' BTX sing 76 n n C5' "H5'1" BTX sing 77 n n C5' "H5'2" BTX sing 78 n n C4' O4' BTX sing 79 n n C4' C3' BTX sing 80 n n C4' H4' BTX sing 81 n n O4' C1' BTX sing 82 n n C3' O3' BTX sing 83 n n C3' C2' BTX sing 84 n n C3' H3' BTX sing 85 n n O3' H3 BTX sing 86 n n C2' O2' BTX sing 87 n n C2' C1' BTX sing 88 n n C2' H1 BTX sing 89 n n O2' H2' BTX sing 90 n n C1' N9 BTX sing 91 n n C1' H1' BTX sing 92 n n N9 C8 BTX sing 93 n y N9 C4 BTX sing 94 n y C8 N7 BTX doub 95 n y C8 H8 BTX sing 96 n n N7 C5 BTX sing 97 n y C5 C6 BTX sing 98 n y C5 C4 BTX doub 99 n y C6 N6 BTX sing 100 n n C6 N1 BTX doub 101 n y N6 HN61 BTX sing 102 n n N6 HN62 BTX sing 103 n n N1 C2 BTX sing 104 n y C2 N3 BTX doub 105 n y C2 H4 BTX sing 106 n n N3 C4 BTX sing 107 n y CBB OBB BTX sing 108 n n CBB CAB BTX sing 109 n n CBB H111 BTX sing 110 n n CBB H112 BTX sing 111 n n CAB C9B BTX sing 112 n n CAB H101 BTX sing 113 n n CAB H102 BTX sing 114 n n C9B C8B BTX sing 115 n n C9B H9B1 BTX sing 116 n n C9B H9B2 BTX sing 117 n n C8B C7B BTX sing 118 n n C8B H8B1 BTX sing 119 n n C8B H8B2 BTX sing 120 n n C7B C2B BTX sing 121 n n C7B H7B1 BTX sing 122 n n C7B H7B2 BTX sing 123 n n C2B S1B BTX sing 124 n n C2B C4B BTX sing 125 n n C2B H2B BTX sing 126 n n S1B C6B BTX sing 127 n n C6B C5B BTX sing 128 n n C6B H6B1 BTX sing 129 n n C6B H6B2 BTX sing 130 n n C5B N1B BTX sing 131 n n C5B C4B BTX sing 132 n n C5B H5B BTX sing 133 n n N1B C3B BTX sing 134 n n N1B H1B BTX sing 135 n n C3B O3B BTX doub 136 n n C3B N2B BTX sing 137 n n N2B C4B BTX sing 138 n n N2B H2 BTX sing 139 n n C4B H4B BTX sing 140 n n # _atom_sites.entry_id 2EWN _atom_sites.fract_transf_matrix[1][1] 0.006571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTX A 1 501 501 BTX BTX . D 2 BTX B 1 500 500 BTX BTX . E 3 HOH A 1 502 1 HOH HOH . E 3 HOH A 2 503 2 HOH HOH . E 3 HOH A 3 504 4 HOH HOH . E 3 HOH A 4 505 6 HOH HOH . E 3 HOH A 5 506 7 HOH HOH . E 3 HOH A 6 507 8 HOH HOH . E 3 HOH A 7 508 10 HOH HOH . E 3 HOH A 8 509 11 HOH HOH . E 3 HOH A 9 510 12 HOH HOH . E 3 HOH A 10 511 14 HOH HOH . E 3 HOH A 11 512 15 HOH HOH . E 3 HOH A 12 513 16 HOH HOH . E 3 HOH A 13 514 17 HOH HOH . E 3 HOH A 14 515 18 HOH HOH . E 3 HOH A 15 516 19 HOH HOH . E 3 HOH A 16 517 20 HOH HOH . E 3 HOH A 17 518 21 HOH HOH . E 3 HOH A 18 519 23 HOH HOH . E 3 HOH A 19 520 25 HOH HOH . E 3 HOH A 20 521 26 HOH HOH . E 3 HOH A 21 522 28 HOH HOH . E 3 HOH A 22 523 29 HOH HOH . E 3 HOH A 23 524 31 HOH HOH . E 3 HOH A 24 525 32 HOH HOH . E 3 HOH A 25 526 33 HOH HOH . E 3 HOH A 26 527 34 HOH HOH . E 3 HOH A 27 528 35 HOH HOH . E 3 HOH A 28 529 36 HOH HOH . E 3 HOH A 29 530 37 HOH HOH . E 3 HOH A 30 531 39 HOH HOH . E 3 HOH A 31 532 41 HOH HOH . E 3 HOH A 32 533 42 HOH HOH . E 3 HOH A 33 534 43 HOH HOH . E 3 HOH A 34 535 45 HOH HOH . E 3 HOH A 35 536 46 HOH HOH . E 3 HOH A 36 537 47 HOH HOH . E 3 HOH A 37 538 48 HOH HOH . E 3 HOH A 38 539 49 HOH HOH . E 3 HOH A 39 540 51 HOH HOH . E 3 HOH A 40 541 52 HOH HOH . E 3 HOH A 41 542 53 HOH HOH . E 3 HOH A 42 543 54 HOH HOH . F 3 HOH B 1 501 3 HOH HOH . F 3 HOH B 2 502 5 HOH HOH . F 3 HOH B 3 503 9 HOH HOH . F 3 HOH B 4 504 13 HOH HOH . F 3 HOH B 5 505 22 HOH HOH . F 3 HOH B 6 506 27 HOH HOH . F 3 HOH B 7 507 38 HOH HOH . F 3 HOH B 8 508 40 HOH HOH . F 3 HOH B 9 509 44 HOH HOH . F 3 HOH B 10 510 50 HOH HOH . F 3 HOH B 11 511 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P BTX . . . D 2 38.21 49.517 -24.417 1 48.72 ? P BTX 500 B 1 HETATM 2 O O1P BTX . . . D 2 37.54 49.252 -25.778 1 48.32 ? O1P BTX 500 B 1 HETATM 3 O O2P BTX . . . D 2 37.943 51 -23.987 1 51.38 ? O2P BTX 500 B 1 HETATM 4 O O5' BTX . . . D 2 39.768 49.158 -24.731 1 50.32 ? O5' BTX 500 B 1 HETATM 5 C C5' BTX . . . D 2 40.66 50.072 -25.396 1 48.95 ? C5' BTX 500 B 1 HETATM 6 C C4' BTX . . . D 2 42.102 49.699 -25.282 1 51.32 ? C4' BTX 500 B 1 HETATM 7 O O4' BTX . . . D 2 42.454 48.961 -24.143 1 51.17 ? O4' BTX 500 B 1 HETATM 8 C C3' BTX . . . D 2 42.599 48.753 -26.297 1 52.74 ? C3' BTX 500 B 1 HETATM 9 O O3' BTX . . . D 2 42.427 48.957 -27.699 1 47.55 ? O3' BTX 500 B 1 HETATM 10 C C2' BTX . . . D 2 43.992 48.675 -25.826 1 55.25 ? C2' BTX 500 B 1 HETATM 11 O O2' BTX . . . D 2 44.659 49.898 -26.181 1 57.23 ? O2' BTX 500 B 1 HETATM 12 C C1' BTX . . . D 2 43.83 48.545 -24.327 1 50.92 ? C1' BTX 500 B 1 HETATM 13 N N9 BTX . . . D 2 43.965 47.22 -23.693 1 51.75 ? N9 BTX 500 B 1 HETATM 14 C C8 BTX . . . D 2 43.791 45.945 -24.209 1 45.31 ? C8 BTX 500 B 1 HETATM 15 N N7 BTX . . . D 2 44.003 45.038 -23.225 1 47.23 ? N7 BTX 500 B 1 HETATM 16 C C5 BTX . . . D 2 44.321 45.727 -22.077 1 45.79 ? C5 BTX 500 B 1 HETATM 17 C C6 BTX . . . D 2 44.626 45.286 -20.793 1 41.12 ? C6 BTX 500 B 1 HETATM 18 N N6 BTX . . . D 2 44.642 43.973 -20.507 1 45.94 ? N6 BTX 500 B 1 HETATM 19 N N1 BTX . . . D 2 44.906 46.284 -19.812 1 36.3 ? N1 BTX 500 B 1 HETATM 20 C C2 BTX . . . D 2 44.882 47.676 -20.105 1 48.61 ? C2 BTX 500 B 1 HETATM 21 N N3 BTX . . . D 2 44.577 48.1 -21.407 1 47.23 ? N3 BTX 500 B 1 HETATM 22 C C4 BTX . . . D 2 44.301 47.1 -22.367 1 50.16 ? C4 BTX 500 B 1 HETATM 23 C CBB BTX . . . D 2 36.721 48.219 -22.78 1 39.85 ? CBB BTX 500 B 1 HETATM 24 O OBB BTX . . . D 2 37.701 48.524 -23.449 1 53.52 ? OBB BTX 500 B 1 HETATM 25 C CAB BTX . . . D 2 36.68 46.958 -21.959 1 34.57 ? CAB BTX 500 B 1 HETATM 26 C C9B BTX . . . D 2 37.13 45.619 -22.539 1 33.33 ? C9B BTX 500 B 1 HETATM 27 C C8B BTX . . . D 2 36.543 44.515 -21.607 1 29.39 ? C8B BTX 500 B 1 HETATM 28 C C7B BTX . . . D 2 37.259 43.181 -21.297 1 32.62 ? C7B BTX 500 B 1 HETATM 29 C C2B BTX . . . D 2 36.346 42.001 -20.839 1 37.78 ? C2B BTX 500 B 1 HETATM 30 S S1B BTX . . . D 2 37.23 40.469 -20.612 1 38.32 ? S1B BTX 500 B 1 HETATM 31 C C6B BTX . . . D 2 35.679 39.676 -20.236 1 30.36 ? C6B BTX 500 B 1 HETATM 32 C C5B BTX . . . D 2 34.805 40.16 -21.378 1 37.52 ? C5B BTX 500 B 1 HETATM 33 N N1B BTX . . . D 2 34.98 39.383 -22.638 1 46.33 ? N1B BTX 500 B 1 HETATM 34 C C3B BTX . . . D 2 35.373 40.211 -23.649 1 42.56 ? C3B BTX 500 B 1 HETATM 35 O O3B BTX . . . D 2 35.597 39.856 -24.854 1 42.48 ? O3B BTX 500 B 1 HETATM 36 N N2B BTX . . . D 2 35.496 41.51 -23.203 1 38.09 ? N2B BTX 500 B 1 HETATM 37 C C4B BTX . . . D 2 35.167 41.607 -21.8 1 35.87 ? C4B BTX 500 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #