data_2EWV # _model_server_result.job_id LQTOoyn56Ot7B3z6jhAeBw _model_server_result.datetime_utc '2025-07-15 12:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ewv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2EWV # _exptl.entry_id 2EWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2EWV _cell.length_a 108.24 _cell.length_b 108.24 _cell.length_c 69.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2EWV _atom_sites.fract_transf_matrix[1][1] 0.009239 _atom_sites.fract_transf_matrix[1][2] 0.005334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 500 500 ADP ADP . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 601 601 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 606 606 HOH HOH . C 3 HOH A 5 611 611 HOH HOH . C 3 HOH A 6 617 617 HOH HOH . C 3 HOH A 7 618 618 HOH HOH . C 3 HOH A 8 619 619 HOH HOH . C 3 HOH A 9 620 620 HOH HOH . C 3 HOH A 10 622 622 HOH HOH . C 3 HOH A 11 625 625 HOH HOH . C 3 HOH A 12 628 628 HOH HOH . C 3 HOH A 13 631 631 HOH HOH . C 3 HOH A 14 632 632 HOH HOH . C 3 HOH A 15 637 637 HOH HOH . C 3 HOH A 16 641 641 HOH HOH . C 3 HOH A 17 642 642 HOH HOH . C 3 HOH A 18 647 647 HOH HOH . C 3 HOH A 19 662 662 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -4.931 38.629 8.703 1 63.89 ? PB ADP 500 A 1 HETATM 2 O O1B ADP . . . B 2 -3.928 37.539 8.685 1 62.26 ? O1B ADP 500 A 1 HETATM 3 O O2B ADP . . . B 2 -5.279 39.054 7.175 1 61.29 ? O2B ADP 500 A 1 HETATM 4 O O3B ADP . . . B 2 -6.233 38.066 9.443 1 63.93 ? O3B ADP 500 A 1 HETATM 5 P PA ADP . . . B 2 -5.496 40.957 10.049 1 60.73 ? PA ADP 500 A 1 HETATM 6 O O1A ADP . . . B 2 -6.796 40.742 9.386 1 58.19 ? O1A ADP 500 A 1 HETATM 7 O O2A ADP . . . B 2 -5.662 40.789 11.657 1 60.17 ? O2A ADP 500 A 1 HETATM 8 O O3A ADP . . . B 2 -4.337 39.918 9.515 1 62.21 ? O3A ADP 500 A 1 HETATM 9 O O5' ADP . . . B 2 -5.026 42.472 9.728 1 62.55 ? O5' ADP 500 A 1 HETATM 10 C C5' ADP . . . B 2 -3.8 42.735 10.453 1 62.53 ? C5' ADP 500 A 1 HETATM 11 C C4' ADP . . . B 2 -3.58 44.251 10.638 1 61.23 ? C4' ADP 500 A 1 HETATM 12 O O4' ADP . . . B 2 -4.011 45 9.451 1 60.81 ? O4' ADP 500 A 1 HETATM 13 C C3' ADP . . . B 2 -4.388 44.771 11.845 1 61.47 ? C3' ADP 500 A 1 HETATM 14 O O3' ADP . . . B 2 -3.592 45.653 12.632 1 59.57 ? O3' ADP 500 A 1 HETATM 15 C C2' ADP . . . B 2 -5.594 45.478 11.184 1 62.48 ? C2' ADP 500 A 1 HETATM 16 O O2' ADP . . . B 2 -6.126 46.546 11.975 1 63.11 ? O2' ADP 500 A 1 HETATM 17 C C1' ADP . . . B 2 -5.058 45.949 9.821 1 62.94 ? C1' ADP 500 A 1 HETATM 18 N N9 ADP . . . B 2 -6.143 45.932 8.8 1 64.61 ? N9 ADP 500 A 1 HETATM 19 C C8 ADP . . . B 2 -6.989 44.878 8.521 1 66.14 ? C8 ADP 500 A 1 HETATM 20 N N7 ADP . . . B 2 -7.831 45.193 7.573 1 66.14 ? N7 ADP 500 A 1 HETATM 21 C C5 ADP . . . B 2 -7.589 46.467 7.166 1 65.88 ? C5 ADP 500 A 1 HETATM 22 C C6 ADP . . . B 2 -8.171 47.345 6.199 1 65.06 ? C6 ADP 500 A 1 HETATM 23 N N6 ADP . . . B 2 -9.227 46.924 5.411 1 63.53 ? N6 ADP 500 A 1 HETATM 24 N N1 ADP . . . B 2 -7.655 48.597 6.063 1 65.1 ? N1 ADP 500 A 1 HETATM 25 C C2 ADP . . . B 2 -6.634 49.024 6.814 1 64.89 ? C2 ADP 500 A 1 HETATM 26 N N3 ADP . . . B 2 -6.059 48.231 7.742 1 65.69 ? N3 ADP 500 A 1 HETATM 27 C C4 ADP . . . B 2 -6.503 46.968 7.956 1 66 ? C4 ADP 500 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #