data_2EXS # _model_server_result.job_id 8LngzaJs9bCxFcFCOG1Y7w _model_server_result.datetime_utc '2024-11-26 20:46:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2exs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":100}' # _entry.id 2EXS # _exptl.entry_id 2EXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EXS _cell.length_a 110.04 _cell.length_b 110.04 _cell.length_c 36.84 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 110.04 220.08 0 3 'crystal symmetry operation' 3_655 -y+3/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 165.06 55.02 0 4 'crystal symmetry operation' 4_465 y-1/2,-x+3/2,z 0 1 0 -1 0 0 0 0 1 -55.02 165.06 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 62 A THR 65 1_555 A N MSE 63 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 63 A MSE 66 1_555 A N HIS 64 A HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 B C THR 62 B THR 65 1_555 B N MSE 63 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 B C MSE 63 B MSE 66 1_555 B N HIS 64 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 C C THR 62 C THR 65 1_555 C N MSE 63 C MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C MSE 63 C MSE 66 1_555 C N HIS 64 C HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 295 n n N H TRP sing 296 n n N H2 TRP sing 297 n n CA C TRP sing 298 n n CA CB TRP sing 299 n n CA HA TRP sing 300 n n C O TRP doub 301 n n C OXT TRP sing 302 n n CB CG TRP sing 303 n n CB HB2 TRP sing 304 n n CB HB3 TRP sing 305 n n CG CD1 TRP doub 306 n y CG CD2 TRP sing 307 n y CD1 NE1 TRP sing 308 n y CD1 HD1 TRP sing 309 n n CD2 CE2 TRP doub 310 n y CD2 CE3 TRP sing 311 n y NE1 CE2 TRP sing 312 n y NE1 HE1 TRP sing 313 n n CE2 CZ2 TRP sing 314 n y CE3 CZ3 TRP doub 315 n y CE3 HE3 TRP sing 316 n n CZ2 CH2 TRP doub 317 n y CZ2 HZ2 TRP sing 318 n n CZ3 CH2 TRP sing 319 n y CZ3 HZ3 TRP sing 320 n n CH2 HH2 TRP sing 321 n n OXT HXT TRP sing 322 n n # _atom_sites.entry_id 2EXS _atom_sites.fract_transf_matrix[1][1] 0.009088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TRP A 1 100 100 TRP TRP . E 2 TRP B 1 1100 100 TRP TRP . F 2 TRP B 1 2100 100 TRP TRP . G 3 HOH A 1 101 3 HOH HOH . G 3 HOH A 2 102 4 HOH HOH . G 3 HOH A 3 103 6 HOH HOH . G 3 HOH A 4 104 7 HOH HOH . G 3 HOH A 5 105 8 HOH HOH . G 3 HOH A 6 106 14 HOH HOH . G 3 HOH A 7 107 15 HOH HOH . G 3 HOH A 8 108 17 HOH HOH . G 3 HOH A 9 109 20 HOH HOH . G 3 HOH A 10 110 27 HOH HOH . G 3 HOH A 11 111 30 HOH HOH . G 3 HOH A 12 112 31 HOH HOH . G 3 HOH A 13 113 36 HOH HOH . G 3 HOH A 14 114 39 HOH HOH . H 3 HOH B 1 2101 5 HOH HOH . H 3 HOH B 2 2102 10 HOH HOH . H 3 HOH B 3 2103 11 HOH HOH . H 3 HOH B 4 2104 16 HOH HOH . H 3 HOH B 5 2105 18 HOH HOH . H 3 HOH B 6 2106 19 HOH HOH . H 3 HOH B 7 2107 21 HOH HOH . H 3 HOH B 8 2108 24 HOH HOH . H 3 HOH B 9 2109 25 HOH HOH . H 3 HOH B 10 2110 26 HOH HOH . H 3 HOH B 11 2111 28 HOH HOH . H 3 HOH B 12 2112 29 HOH HOH . H 3 HOH B 13 2113 32 HOH HOH . H 3 HOH B 14 2114 37 HOH HOH . I 3 HOH C 1 81 1 HOH HOH . I 3 HOH C 2 82 2 HOH HOH . I 3 HOH C 3 83 9 HOH HOH . I 3 HOH C 4 84 12 HOH HOH . I 3 HOH C 5 85 13 HOH HOH . I 3 HOH C 6 86 22 HOH HOH . I 3 HOH C 7 87 23 HOH HOH . I 3 HOH C 8 88 33 HOH HOH . I 3 HOH C 9 89 34 HOH HOH . I 3 HOH C 10 90 35 HOH HOH . I 3 HOH C 11 91 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 2 31.684 93.337 24.125 1 11.87 ? N TRP 100 A 1 HETATM 2 C CA TRP . . . D 2 32.704 93.077 23.031 1 13.03 ? CA TRP 100 A 1 HETATM 3 C C TRP . . . D 2 34.083 93.612 23.425 1 13.41 ? C TRP 100 A 1 HETATM 4 O O TRP . . . D 2 34.118 94.743 23.909 1 12.39 ? O TRP 100 A 1 HETATM 5 C CB TRP . . . D 2 32.267 93.727 21.707 1 13.02 ? CB TRP 100 A 1 HETATM 6 C CG TRP . . . D 2 33.117 93.321 20.477 1 15.07 ? CG TRP 100 A 1 HETATM 7 C CD1 TRP . . . D 2 34.124 94.058 19.884 1 16.18 ? CD1 TRP 100 A 1 HETATM 8 C CD2 TRP . . . D 2 33.04 92.092 19.727 1 13.86 ? CD2 TRP 100 A 1 HETATM 9 N NE1 TRP . . . D 2 34.657 93.371 18.816 1 13.07 ? NE1 TRP 100 A 1 HETATM 10 C CE2 TRP . . . D 2 34.003 92.171 18.685 1 14.76 ? CE2 TRP 100 A 1 HETATM 11 C CE3 TRP . . . D 2 32.2 90.956 19.778 1 12.2 ? CE3 TRP 100 A 1 HETATM 12 C CZ2 TRP . . . D 2 34.174 91.141 17.732 1 14.12 ? CZ2 TRP 100 A 1 HETATM 13 C CZ3 TRP . . . D 2 32.381 89.938 18.844 1 13.35 ? CZ3 TRP 100 A 1 HETATM 14 C CH2 TRP . . . D 2 33.363 90.039 17.833 1 14.13 ? CH2 TRP 100 A 1 HETATM 15 O OXT TRP . . . D 2 35.139 92.957 23.198 1 13.17 ? OXT TRP 100 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #