data_2EXX
#
_model_server_result.job_id            eCeDRE_Y2OE-RuuqZDbbTg 
_model_server_result.datetime_utc      '2024-11-22 14:02:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2exx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2647}' 
#
_entry.id    2EXX 
#
_exptl.entry_id    2EXX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2EXX 
_cell.length_a            223.3 
_cell.length_b            223.3 
_cell.length_c            223.3 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2EXX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             92 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              85 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             92 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              85 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.037 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2EXX 
_atom_sites.fract_transf_matrix[1][1]    0.004478 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 3698 3698 NAP NAP . 
D 3 GOL A 1 2647 2647 GOL GOL . 
E 4 HOH A 1 3699 1 HOH TIP . 
E 4 HOH A 2 3700 2 HOH TIP . 
E 4 HOH A 3 3701 3 HOH TIP . 
E 4 HOH A 4 3702 4 HOH TIP . 
E 4 HOH A 5 3703 5 HOH TIP . 
E 4 HOH A 6 3704 6 HOH TIP . 
E 4 HOH A 7 3705 7 HOH TIP . 
E 4 HOH A 8 3706 8 HOH TIP . 
E 4 HOH A 9 3707 9 HOH TIP . 
E 4 HOH A 10 3708 11 HOH TIP . 
E 4 HOH A 11 3709 12 HOH TIP . 
E 4 HOH A 12 3710 13 HOH TIP . 
E 4 HOH A 13 3711 14 HOH TIP . 
E 4 HOH A 14 3712 16 HOH TIP . 
E 4 HOH A 15 3713 17 HOH TIP . 
E 4 HOH A 16 3714 20 HOH TIP . 
E 4 HOH A 17 3715 21 HOH TIP . 
E 4 HOH A 18 3716 24 HOH TIP . 
E 4 HOH A 19 3717 25 HOH TIP . 
E 4 HOH A 20 3718 26 HOH TIP . 
E 4 HOH A 21 3719 27 HOH TIP . 
E 4 HOH A 22 3720 31 HOH TIP . 
E 4 HOH A 23 3721 32 HOH TIP . 
E 4 HOH A 24 3722 33 HOH TIP . 
E 4 HOH A 25 3723 34 HOH TIP . 
E 4 HOH A 26 3724 35 HOH TIP . 
E 4 HOH A 27 3725 36 HOH TIP . 
E 4 HOH A 28 3726 37 HOH TIP . 
E 4 HOH A 29 3727 40 HOH TIP . 
E 4 HOH A 30 3728 41 HOH TIP . 
E 4 HOH A 31 3729 43 HOH TIP . 
E 4 HOH A 32 3730 45 HOH TIP . 
E 4 HOH A 33 3731 46 HOH TIP . 
E 4 HOH A 34 3732 49 HOH TIP . 
E 4 HOH A 35 3733 51 HOH TIP . 
E 4 HOH A 36 3734 52 HOH TIP . 
E 4 HOH A 37 3735 54 HOH TIP . 
E 4 HOH A 38 3736 55 HOH TIP . 
E 4 HOH A 39 3737 56 HOH TIP . 
E 4 HOH A 40 3738 58 HOH TIP . 
E 4 HOH A 41 3739 59 HOH TIP . 
E 4 HOH A 42 3740 60 HOH TIP . 
E 4 HOH A 43 3741 62 HOH TIP . 
E 4 HOH A 44 3742 63 HOH TIP . 
E 4 HOH A 45 3743 64 HOH TIP . 
E 4 HOH A 46 3744 68 HOH TIP . 
E 4 HOH A 47 3745 69 HOH TIP . 
E 4 HOH A 48 3746 71 HOH TIP . 
E 4 HOH A 49 3747 72 HOH TIP . 
E 4 HOH A 50 3748 73 HOH TIP . 
E 4 HOH A 51 3749 74 HOH TIP . 
E 4 HOH A 52 3750 75 HOH TIP . 
E 4 HOH A 53 3751 76 HOH TIP . 
E 4 HOH A 54 3752 78 HOH TIP . 
E 4 HOH A 55 3753 79 HOH TIP . 
E 4 HOH A 56 3754 80 HOH TIP . 
E 4 HOH A 57 3755 82 HOH TIP . 
E 4 HOH A 58 3756 84 HOH TIP . 
E 4 HOH A 59 3757 85 HOH TIP . 
E 4 HOH A 60 3758 86 HOH TIP . 
E 4 HOH A 61 3759 87 HOH TIP . 
E 4 HOH A 62 3760 88 HOH TIP . 
E 4 HOH A 63 3761 90 HOH TIP . 
F 4 HOH B 1 300 10 HOH TIP . 
F 4 HOH B 2 301 15 HOH TIP . 
F 4 HOH B 3 302 18 HOH TIP . 
F 4 HOH B 4 303 19 HOH TIP . 
F 4 HOH B 5 304 22 HOH TIP . 
F 4 HOH B 6 305 23 HOH TIP . 
F 4 HOH B 7 306 28 HOH TIP . 
F 4 HOH B 8 307 29 HOH TIP . 
F 4 HOH B 9 308 30 HOH TIP . 
F 4 HOH B 10 309 38 HOH TIP . 
F 4 HOH B 11 310 39 HOH TIP . 
F 4 HOH B 12 311 42 HOH TIP . 
F 4 HOH B 13 312 44 HOH TIP . 
F 4 HOH B 14 313 47 HOH TIP . 
F 4 HOH B 15 314 48 HOH TIP . 
F 4 HOH B 16 315 50 HOH TIP . 
F 4 HOH B 17 316 53 HOH TIP . 
F 4 HOH B 18 317 57 HOH TIP . 
F 4 HOH B 19 318 61 HOH TIP . 
F 4 HOH B 20 319 65 HOH TIP . 
F 4 HOH B 21 320 66 HOH TIP . 
F 4 HOH B 22 321 67 HOH TIP . 
F 4 HOH B 23 322 70 HOH TIP . 
F 4 HOH B 24 323 77 HOH TIP . 
F 4 HOH B 25 324 81 HOH TIP . 
F 4 HOH B 26 325 83 HOH TIP . 
F 4 HOH B 27 326 89 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 78.462 29.225 116.297 1 30.46 ? C1 GOL 2647 A 1 
HETATM 2 O O1 GOL . . . D 3 79.185 27.96 116.181 1 29.43 ? O1 GOL 2647 A 1 
HETATM 3 C C2 GOL . . . D 3 77.151 29.258 115.485 1 27.59 ? C2 GOL 2647 A 1 
HETATM 4 O O2 GOL . . . D 3 76.214 28.199 115.804 1 29.91 ? O2 GOL 2647 A 1 
HETATM 5 C C3 GOL . . . D 3 76.482 30.618 115.672 1 26.6 ? C3 GOL 2647 A 1 
HETATM 6 O O3 GOL . . . D 3 75.248 30.678 114.942 1 20.61 ? O3 GOL 2647 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#